Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025868 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 1.4e-72 276.2 139 100.0
CSS0048320 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 8.3e-65 250.4 128 96.1
CSS0039249 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 1.2e-58 229.9 138 82.6
CSS0003429 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 7.5e-58 227.3 138 81.2
CSS0026794 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 1.3e-57 226.5 139 83.5
CSS0020150 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 1.4e-51 206.5 122 82.8
CSS0020566 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 1.9e-29 132.9 138 55.8
Dinv40186 Davidia involucrata HOM05D009853 ORTHO05D009969 6.2e-20 101.3 132 43.9
vmacro23014 Vaccinium macrocarpon HOM05D011412 ORTHO05D009969 8.1e-20 100.9 140 45.7
Actinidia20182 Actinidia chinensis HOM05D011412 ORTHO05D009969 2.4e-19 99.4 139 42.4
Rhsim08G0215000 Rhododendron simsii HOM05D011412 ORTHO05D009969 2.6e-18 95.9 147 43.5
Dinv30482 Davidia involucrata HOM05D009853 ORTHO05D009969 1.3e-17 93.6 126 41.3
Rhsim08G0027100 Rhododendron simsii HOM05D011412 ORTHO05D009969 2.2e-17 92.8 130 38.5
Dinv38023 Davidia involucrata HOM05D011412 ORTHO05D009969 1.9e-16 89.7 127 41.7
Solyc05g013370.1 Solanum lycopersicum HOM05D013339 ORTHO05D009969 7.1e-16 87.8 127 40.2
Rhsim07G0189200 Rhododendron simsii HOM05D009853 ORTHO05D009969 1.2e-15 87.0 127 38.6
CAN.G1238.8 Capsicum annuum HOM05D006716 ORTHO05D008396 2.7e-15 85.9 122 36.9
Sopen05g008160 Solanum pennellii HOM05D013339 ORTHO05D009969 2.7e-15 85.9 127 39.4
PGSC0003DMG400018623 Solanum tuberosum HOM05D013339 ORTHO05D009969 3.0e-14 82.4 127 38.6
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 7.3e-13 77.8 122 38.5
PGSC0003DMG400007682 Solanum tuberosum HOM05D013339 ORTHO05D009969 3.6e-12 75.5 127 37.0
Dinv42114 Davidia involucrata HOM05D011412 ORTHO05D009969 3.4e-10 68.9 127 36.2
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 4.4e-10 68.6 146 34.2
DCAR_007526 Daucus carota HOM05D009853 ORTHO05D009969 9.9e-10 67.4 148 33.1
Nitab4.5_0003774g0010 Nicotiana tabacum HOM05D038292 ORTHO05D009969 1.3e-09 67.0 121 33.9
Oeu029235.1 Olea europaea HOM05D011412 ORTHO05D009969 1.3e-09 67.0 127 31.5
Actinidia01758 Actinidia chinensis HOM05D013339 ORTHO05D009969 1.7e-09 66.6 106 41.5
Oeu029234.1 Olea europaea HOM05D011412 ORTHO05D009969 4.9e-09 65.1 127 28.3
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 3.2e-08 62.4 127 32.3
CSS0000924 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 4.2e-08 62.0 135 30.4
CSS0003566 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 5.4e-08 61.6 135 30.4
Nitab4.5_0000365g0070 Nicotiana tabacum HOM05D000307 ORTHO05D000166 5.4e-08 61.6 130 33.1
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 7.1e-08 61.2 130 29.2
CSS0008018 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 7.1e-08 61.2 135 30.4
CSS0019303 Camellia sinensis var. sinensis HOM05D009853 ORTHO05D009969 7.1e-08 61.2 50 50.0
CSS0019629 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 7.1e-08 61.2 135 30.4
CSS0028822 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 7.1e-08 61.2 136 30.9
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 7.1e-08 61.2 132 29.5
Nitab4.5_0007355g0010 Nicotiana tabacum HOM05D000307 ORTHO05D000166 7.1e-08 61.2 130 33.8
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 7.1e-08 61.2 125 29.6
AL8G42910 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 9.3e-08 60.8 138 28.3
CSS0013985 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 9.3e-08 60.8 126 30.2
AT4G11250 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.2e-07 60.5 137 29.2
Oeu031750.4 Olea europaea HOM05D041624 ORTHO05D009969 1.2e-07 60.5 128 30.5
CSS0012311 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.6e-07 60.1 135 29.6
Sopen11g010690 Solanum pennellii HOM05D000307 ORTHO05D000166 1.6e-07 60.1 142 29.6
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 2.1e-07 59.7 139 28.8
CSS0034462 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 2.7e-07 59.3 135 30.4
MBI16_g16371_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 2.7e-07 59.3 152 30.3
Cfa015195 Carpinus fangiana HOM05D006887 ORTHO05D009969 3.5e-07 58.9 130 30.8
Nitab4.5_0000167g0220 Nicotiana tabacum HOM05D000307 ORTHO05D000166 4.6e-07 58.5 128 30.5
TAR365G0201 Trochodendron aralioides HOM05D000307 ORTHO05D000166 4.6e-07 58.5 66 40.9
Haze_01459 Corylus avellana HOM05D006887 ORTHO05D009969 7.9e-07 57.8 136 30.1
Atru.chr6.1689 Acer truncatum HOM05D006887 ORTHO05D009969 1.0e-06 57.4 144 27.8
CSS0029498 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.0e-06 57.4 150 27.3
Oeu014492.1 Olea europaea HOM05D011412 ORTHO05D009969 1.0e-06 57.4 121 27.3
MBI09_g18620_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 1.3e-06 57.0 135 34.1
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 1.7e-06 56.6 133 27.1
A02p43880 Brassica napus HOM05D006887 ORTHO05D004325 1.7e-06 56.6 139 29.5
BraA02t09311Z Brassica rapa HOM05D006887 ORTHO05D004325 1.7e-06 56.6 139 29.5
Manes.15G161100 Manihot esculenta HOM05D028904 ORTHO05D000166 1.7e-06 56.6 133 30.8
Sabra15G0102400 Salix brachista HOM05D006887 ORTHO05D009969 2.3e-06 56.2 137 29.2
C02p64040 Brassica napus HOM05D006887 ORTHO05D004325 3.0e-06 55.8 137 29.9
BolC2t12470H Brassica oleracea HOM05D006887 ORTHO05D004325 3.0e-06 55.8 137 29.9
Eucgr.K02595 Eucalyptus grandis HOM05D000307 ORTHO05D000166 3.0e-06 55.8 133 29.3
Lsat_1_v5_gn_5_103840 Lactuca sativa HOM05D000307 ORTHO05D000166 3.0e-06 55.8 132 33.3
Sp2g28440 Schrenkiella parvula HOM05D006887 ORTHO05D004325 3.0e-06 55.8 141 27.7
ATR0605G195 Amborella trichopoda HOM05D000307 ORTHO05D000166 3.9e-06 55.5 126 29.4
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.9e-06 55.5 58 41.4
BcaC03g18328 Brassica carinata HOM05D006887 ORTHO05D004325 3.9e-06 55.5 137 29.9
Rhsim04G0216100 Rhododendron simsii HOM05D011412 ORTHO05D009969 3.9e-06 55.5 122 28.7
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 5.1e-06 55.1 132 25.0
Sabra01G0168300 Salix brachista HOM05D006887 ORTHO05D004325 5.1e-06 55.1 139 33.1
Sc04g0008670 Simmondsia chinensis HOM05D000307 ORTHO05D000166 5.1e-06 55.1 138 31.9
Sopen01g046240 Solanum pennellii HOM05D000600 ORTHO05D000432 5.1e-06 55.1 62 37.1
TAR624G0600 Trochodendron aralioides HOM05D000307 ORTHO05D000166 5.1e-06 55.1 145 24.8
CSS0029060 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 6.6e-06 54.7 140 27.9
MBI16_g19061_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 6.6e-06 54.7 152 28.3
Peaxi162Scf00011g00077 Petunia axillaris HOM05D009853 ORTHO05D009969 6.6e-06 54.7 50 44.0
MBI16_g19060_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 8.7e-06 54.3 143 28.7
Oeu034504.1 Olea europaea HOM05D011412 ORTHO05D009969 8.7e-06 54.3 116 27.6
Potri.004G222200 Populus trichocarpa HOM05D006887 ORTHO05D009969 8.7e-06 54.3 131 32.8
RcHm_v2.0_Chr2g0175531 Rosa chinensis HOM05D000307 ORTHO05D000166 8.7e-06 54.3 122 33.6
Sopen01g046270 Solanum pennellii HOM05D000600 ORTHO05D000432 8.7e-06 54.3 62 37.1


User provided reference genes

Program Settings