Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025861 Camellia sinensis var. sinensis HOM05D006511 ORTHO05D007567 2.0e-150 535.8 281 100.0
Actinidia29367 Actinidia chinensis HOM05D006511 ORTHO05D007567 8.7e-106 387.5 282 74.8
Dinv22148 Davidia involucrata HOM05D006511 ORTHO05D007567 1.2e-102 377.1 282 70.6
Rhsim02G0172300 Rhododendron simsii HOM05D006511 ORTHO05D007567 1.1e-89 334.0 271 69.4
QL09p001374 Quercus lobata HOM05D006511 ORTHO05D007567 2.0e-86 323.2 282 61.3
Potri.013G095400 Populus trichocarpa HOM05D006511 ORTHO05D007567 3.2e-84 315.8 283 57.6
CiPaw.03G012800 Carya illinoinensis HOM05D006511 ORTHO05D007567 8.0e-83 311.2 282 59.6
FAN19G0686 Fragaria x ananassa HOM05D006511 ORTHO05D007567 1.4e-79 300.4 282 57.1
RcHm_v2.0_Chr6g0249621 Rosa chinensis HOM05D006511 ORTHO05D007567 1.4e-79 300.4 282 55.3
FvH4_2g00330 Fragaria vesca HOM05D006511 ORTHO05D007567 3.1e-79 299.3 282 57.1
FAN24G0692 Fragaria x ananassa HOM05D006511 ORTHO05D007567 3.1e-79 299.3 282 57.4
TAR636G2957 Trochodendron aralioides HOM05D006511 ORTHO05D007567 1.2e-78 297.4 271 62.4
Sabra13G0081400 Salix brachista HOM05D006511 ORTHO05D007567 2.7e-78 296.2 283 56.5
Thecc.08G168400 Theobroma cacao HOM05D006511 ORTHO05D007567 1.3e-77 293.9 281 54.8
MD05G1006300 Malus domestica HOM05D006511 ORTHO05D007567 1.1e-76 290.8 276 57.2
FAN20G0885 Fragaria x ananassa HOM05D006511 ORTHO05D007567 2.1e-75 286.6 290 54.1
Manes.18G109250 Manihot esculenta HOM05D006511 ORTHO05D007567 2.7e-75 286.2 283 54.8
Lsat_1_v5_gn_1_24541 Lactuca sativa HOM05D006511 ORTHO05D007567 7.5e-73 278.1 291 51.2
Phvul.011G215700 Phaseolus vulgaris HOM05D006511 ORTHO05D007567 2.8e-72 276.2 283 53.0
HanXRQChr04g0102481 Helianthus annuus HOM05D006511 ORTHO05D007567 6.3e-72 275.0 266 56.4
Nn5g27238 Nelumbo nucifera HOM05D006511 ORTHO05D007567 1.4e-71 273.9 286 52.4
Sed0008597 Sechium edule HOM05D006511 ORTHO05D007567 1.4e-71 273.9 287 53.3
CANSAT56G0749 Cannabis sativa HOM05D006511 ORTHO05D007567 4.1e-71 272.3 283 52.3
TWI12G0802 Tripterygium wilfordii HOM05D006511 ORTHO05D007567 5.9e-70 268.5 263 55.1
HanXRQChr04g0102471 Helianthus annuus HOM05D006511 ORTHO05D007567 3.8e-69 265.8 260 56.2
Gohir.D08G249200 Gossypium hirsutum HOM05D006511 ORTHO05D007567 6.5e-69 265.0 280 50.7
Gorai.004G265800 Gossypium raimondii HOM05D006511 ORTHO05D007567 8.6e-69 264.6 280 50.7
Prupe.8G003600 Prunus persica HOM05D006511 ORTHO05D007567 4.2e-68 262.3 273 53.8
Cfa008039 Carpinus fangiana HOM05D006511 ORTHO05D007567 7.2e-68 261.5 283 53.0
Hund17299 Selenicereus undatus HOM05D006511 ORTHO05D007567 1.6e-67 260.4 275 52.0
Sc01g0000050 Simmondsia chinensis HOM05D006511 ORTHO05D007567 2.1e-67 260.0 273 53.8
Sopen11g020540 Solanum pennellii HOM05D006511 ORTHO05D007567 8.0e-67 258.1 271 50.6
ECA247G1184 Erigeron canadensis HOM05D006511 ORTHO05D007567 2.3e-66 256.5 272 52.9
THA.LOC104815798 Tarenaya hassleriana HOM05D006511 ORTHO05D007567 2.3e-66 256.5 269 53.5
BcaB03g13696 Brassica carinata HOM05D006511 ORTHO05D007567 3.0e-66 256.1 263 55.5
Migut.C01397 Erythranthe guttata HOM05D006511 ORTHO05D007567 3.0e-66 256.1 267 51.3
Gohir.A08G228900 Gossypium hirsutum HOM05D006511 ORTHO05D007567 6.8e-66 255.0 265 51.3
CARHR032940 Cardamine hirsuta HOM05D006511 ORTHO05D007567 3.4e-65 252.7 263 54.0
Carub.0001s3169 Capsella rubella HOM05D006511 ORTHO05D007567 4.4e-65 252.3 266 53.0
Solyc11g045100.2 Solanum lycopersicum HOM05D006511 ORTHO05D007567 5.7e-65 251.9 267 50.2
BcaC05g27802 Brassica carinata HOM05D006511 ORTHO05D007567 9.8e-65 251.1 263 54.4
DCAR_014062 Daucus carota HOM05D006511 ORTHO05D007567 1.3e-64 250.8 282 52.1
AT1G33500 Arabidopsis thaliana HOM05D006511 ORTHO05D007567 2.8e-64 249.6 266 53.8
PSO384G4286 Papaver somniferum HOM05D006511 ORTHO05D007567 4.9e-64 248.8 278 51.1
Sp1g28980 Schrenkiella parvula HOM05D006511 ORTHO05D007567 6.3e-64 248.4 266 52.6
SGA_v2.0_scaffold118G32636 Striga asiatica HOM05D006511 ORTHO05D007567 4.1e-63 245.7 281 49.5
BraA05t21311Z Brassica rapa HOM05D006511 ORTHO05D007567 1.2e-62 244.2 278 51.1
SalBow7G4276 Salvia bowleyana HOM05D006511 ORTHO05D007567 1.2e-62 244.2 317 47.9
BolC5t32531H Brassica oleracea HOM05D006511 ORTHO05D007567 1.3e-61 240.7 288 50.0
Psat7g227400 Pisum sativum HOM05D006511 ORTHO05D007567 2.3e-61 240.0 282 45.7
VMungo1127G0740 Vigna mungo HOM05D006511 ORTHO05D007567 3.8e-61 239.2 279 49.8
C05p38000 Brassica napus HOM05D006511 ORTHO05D007567 1.5e-60 237.3 288 49.7
PGSC0003DMG401019059 Solanum tuberosum HOM05D006511 ORTHO05D007567 1.5e-60 237.3 254 49.6
Hma1.2p1_1405F.1_g281380 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 3.3e-60 236.1 167 74.9
Glyma.12G241400 Glycine max HOM05D006511 ORTHO05D007567 2.1e-59 233.4 263 48.7
TPR.G34175 Trifolium pratense HOM05D006511 ORTHO05D007567 2.1e-59 233.4 290 46.2
Aa31LG6G7970 Aethionema arabicum HOM05D006511 ORTHO05D007567 1.4e-58 230.7 295 47.8
ClCG11G008290 Citrullus lanatus HOM05D006511 ORTHO05D007567 4.0e-58 229.2 355 42.5
arahy.Tifrunner.gnm1.ann1.HN79E8 Arachis hypogaea HOM05D006511 ORTHO05D007567 9.8e-57 224.6 333 42.3
MELO3C008102.2 Cucumis melo HOM05D006511 ORTHO05D007567 8.3e-56 221.5 288 45.5
Haze_13990 Corylus avellana HOM05D006511 ORTHO05D007567 1.8e-55 220.3 263 48.3
MBI15_g27824_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 2.4e-55 219.9 281 46.6
AUR62038542 Chenopodium quinoa HOM05D006511 ORTHO05D007567 3.2e-55 219.5 262 48.1
Lj3g0014137 Lotus japonicus HOM05D006511 ORTHO05D007567 9.2e-55 218.0 283 46.3
MBI15_g27821_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 6.6e-53 211.8 279 45.2
Thhalv10008295m.g Eutrema salsugineum HOM05D006511 ORTHO05D007567 8.9e-50 201.4 306 43.1
Hma1.2p1_1476F.1_g285820 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 5.8e-49 198.7 163 66.3
FvH4_2g04930 Fragaria vesca HOM05D006511 ORTHO05D007567 9.8e-49 198.0 223 51.6
Atru.chr13.2578 Acer truncatum HOM05D006511 ORTHO05D007567 3.7e-48 196.1 279 43.0
CsaV3_2G033310 Cucumis sativus L. HOM05D006511 ORTHO05D007567 2.4e-47 193.4 294 40.8
FAN24G3334 Fragaria x ananassa HOM05D006511 ORTHO05D007567 5.4e-47 192.2 223 50.2
Ca_13616_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 1.6e-46 190.7 285 42.1
Ca_30187_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 1.6e-46 190.7 285 42.1
Aqoxy6G00041 Aquilegia oxysepala HOM05D006511 ORTHO05D007567 3.5e-46 189.5 265 44.2
COL.COLO4_05044 Corchorus olitorius HOM05D006511 ORTHO05D007567 2.5e-44 183.3 209 49.3
Lj8A308G12 Lonicera japonica HOM05D006511 ORTHO05D007567 1.4e-42 177.6 248 47.6
EL10Ac1g01283 Beta vulgaris HOM05D006511 ORTHO05D007567 1.8e-42 177.2 272 41.2
PGR004G0115 Punica granatum HOM05D006511 ORTHO05D007567 4.4e-41 172.6 231 43.3
FAN20G1821 Fragaria x ananassa HOM05D006511 ORTHO05D007567 1.3e-40 171.0 207 50.7
Peaxi162Scf00078g01026 Petunia axillaris HOM05D006511 ORTHO05D007567 8.3e-40 168.3 270 37.4
Ah.13g067720 Amaranthus hybridus HOM05D006511 ORTHO05D007567 1.9e-39 167.2 238 41.2
CDE10G1127 Ceratophyllum demersum HOM05D006511 ORTHO05D007567 2.4e-39 166.8 263 39.2
HPP92_003819 Vanilla planifolia HOM05D006511 ORTHO05D007567 7.1e-39 165.2 265 37.7
Eucgr.F04079 Eucalyptus grandis HOM05D006511 ORTHO05D007567 9.2e-39 164.9 130 68.5
Cc10_g16070 Coffea canephora HOM05D006511 ORTHO05D007567 2.1e-38 163.7 196 48.0
COL.COLO4_05796 Corchorus olitorius HOM05D006511 ORTHO05D007567 2.3e-37 160.2 340 36.2
Sc01g0000180 Simmondsia chinensis HOM05D006511 ORTHO05D007567 6.6e-37 158.7 128 68.0
unitig_749.g13868 Utricularia gibba HOM05D006511 ORTHO05D007567 2.1e-35 153.7 265 39.2
AL1G47890 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 3.6e-35 152.9 186 48.9
arahy.Tifrunner.gnm1.ann1.VJ45CS Arachis hypogaea HOM05D006511 ORTHO05D007567 6.2e-35 152.1 128 62.5
Ciclev10023919m.g Citrus clementina HOM05D006511 ORTHO05D007567 8.1e-35 151.8 142 62.7
AUR62013391 Chenopodium quinoa HOM05D006511 ORTHO05D007567 2.4e-34 150.2 224 41.5
vmacro11027 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 1.3e-32 144.4 163 54.6
Medtr1g067720 Medicago truncatula HOM05D006511 ORTHO05D007567 3.8e-32 142.9 144 54.2
MSTRG.1607 Avicennia marina HOM05D006511 ORTHO05D007567 4.9e-32 142.5 178 48.3
Nitab4.5_0001489g0030 Nicotiana tabacum HOM05D006511 ORTHO05D007567 9.2e-31 138.3 250 36.8
Zm00001eb028220 Zea mays HOM05D006511 ORTHO05D007567 4.7e-27 125.9 231 36.8
Os08g0320300 Oryza sativa ssp. japonica HOM05D006511 ORTHO05D007567 8.1e-27 125.2 136 49.3
ATR1204G001 Amborella trichopoda HOM05D006511 ORTHO05D007567 3.1e-26 123.2 192 38.5
Haze_13992 Corylus avellana HOM05D006511 ORTHO05D007567 9.0e-26 121.7 146 49.3
Nitab4.5_0000009g0490 Nicotiana tabacum HOM05D006511 ORTHO05D007567 2.9e-24 116.7 267 31.1
Cpa.g.sc142.8 Carica papaya HOM05D006511 ORTHO05D007567 4.2e-23 112.8 198 38.4
Lalb_Chr19g0131901 Lupinus albus HOM05D006511 ORTHO05D007567 2.3e-21 107.1 94 54.3
Medtr1g067710 Medicago truncatula HOM05D006511 ORTHO05D007567 3.0e-21 106.7 93 53.8
AL1G48040 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 5.1e-21 105.9 93 55.9
arahy.Tifrunner.gnm1.ann1.FKD4F4 Arachis hypogaea HOM05D006511 ORTHO05D007567 8.7e-21 105.1 90 53.3
Lalb_Chr19g0131891 Lupinus albus HOM05D006511 ORTHO05D007567 5.6e-20 102.4 100 52.0
Sc01g0000190 Simmondsia chinensis HOM05D006511 ORTHO05D007567 1.3e-19 101.3 94 52.1
Nn5g27242 Nelumbo nucifera HOM05D006511 ORTHO05D007567 1.6e-19 100.9 85 56.5
Eucgr.F04078 Eucalyptus grandis HOM05D006511 ORTHO05D007567 3.6e-19 99.8 101 48.5
vmacro11028 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 9.9e-17 91.7 56 80.4
Ciclev10023084m.g Citrus clementina HOM05D006511 ORTHO05D007567 1.1e-15 88.2 90 52.2
COL.COLO4_36458 Corchorus olitorius HOM05D006511 ORTHO05D007567 1.2e-14 84.7 80 56.2
Hma1.2p1_1476F.1_g285810 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 6.0e-14 82.4 54 66.7
Haze_13997 Corylus avellana HOM05D006511 ORTHO05D007567 7.4e-12 75.5 62 59.7
CSS0011431 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 8.1e-11 72.0 64 60.9
CSS0043730 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 8.1e-11 72.0 64 60.9
CSS0032551 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 1.4e-10 71.2 63 61.9
Haze_13999 Corylus avellana HOM05D006511 ORTHO05D007567 2.4e-10 70.5 55 65.5
CSS0033374 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 6.9e-10 68.9 63 60.3
CSS0043606 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 6.9e-10 68.9 63 60.3
Lalb_Chr19g0131881 Lupinus albus HOM05D006511 ORTHO05D007567 6.9e-10 68.9 48 70.8
CSS0046295 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 1.3e-08 64.7 61 59.0
Duzib116G0864 Durio zibethinus HOM05D006511 ORTHO05D007567 1.4e-07 61.2 128 32.0
AagrBONN_evm.TU.Sc2ySwM_362.2028 Anthoceros agrestis HOM05D006511 ORTHO05D007567 2.4e-07 60.5 158 26.6
Lsat_1_v5_gn_0_19000 Lactuca sativa HOM05D006511 ORTHO05D007567 4.2e-07 59.7 73 46.6


User provided reference genes

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