Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 5.2e-131 471.1 243 100.0
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 9.0e-99 364.0 235 74.0
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 6.4e-97 357.8 246 72.8
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 7.8e-95 350.9 208 77.9
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 6.2e-92 341.3 209 74.6
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 1.8e-91 339.7 243 67.5
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 9.0e-91 337.4 208 74.0
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 2.9e-89 332.4 208 72.6
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 6.4e-89 331.3 208 73.1
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 2.4e-88 329.3 208 70.7
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 9.3e-88 327.4 208 70.2
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 6.0e-87 324.7 207 71.0
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 1.8e-86 323.2 230 65.7
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 3.0e-86 322.4 209 69.9
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 8.7e-86 320.9 208 69.7
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.1e-85 320.5 241 63.5
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 1.5e-85 320.1 208 70.7
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.9e-85 319.7 208 70.2
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 2.5e-85 319.3 209 70.3
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 2.5e-85 319.3 208 71.2
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 4.3e-85 318.5 210 68.1
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 5.6e-85 318.2 193 77.7
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 1.3e-84 317.0 208 70.7
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 1.3e-84 317.0 208 69.7
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 1.6e-84 316.6 208 67.8
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.1e-84 316.2 210 67.6
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 3.1e-83 312.4 208 69.7
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 4.0e-83 312.0 205 68.8
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 4.0e-83 312.0 210 70.0
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 5.3e-83 311.6 208 70.7
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 1.2e-82 310.5 209 67.0
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 2.0e-82 309.7 205 70.7
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 2.6e-82 309.3 208 66.8
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 4.5e-82 308.5 208 67.3
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 4.5e-82 308.5 191 74.9
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 9.9e-82 307.4 209 66.5
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.2e-81 306.2 210 69.5
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 3.8e-81 305.4 208 65.4
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 6.4e-81 304.7 211 66.8
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 1.9e-80 303.1 244 61.1
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 9.3e-80 300.8 208 66.8
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 9.3e-80 300.8 205 63.9
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 2.7e-79 299.3 203 68.5
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 2.3e-78 296.2 208 65.9
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 2.3e-78 296.2 204 64.2
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 3.9e-78 295.4 208 67.8
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 5.1e-78 295.0 244 60.7
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 6.7e-78 294.7 208 65.4
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.1e-77 293.9 220 64.1
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.5e-77 293.5 249 58.6
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 2.5e-77 292.7 208 63.5
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 3.3e-77 292.4 205 62.9
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 3.3e-77 292.4 243 59.3
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 4.3e-77 292.0 208 64.9
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 5.6e-77 291.6 205 63.9
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 2.1e-76 289.7 208 63.9
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 2.8e-76 289.3 209 66.0
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 2.8e-76 289.3 216 60.6
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 3.7e-76 288.9 194 64.4
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 6.2e-76 288.1 235 58.3
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 1.1e-75 287.3 206 68.4
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.5e-74 283.5 205 65.4
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 2.0e-74 283.1 209 64.1
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 5.8e-74 281.6 204 58.3
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 5.8e-74 281.6 199 67.3
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 7.6e-74 281.2 204 57.8
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.0e-73 280.8 206 60.7
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 3.8e-73 278.9 208 60.1
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 6.5e-73 278.1 206 58.7
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 6.5e-73 278.1 206 58.7
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.9e-72 276.6 231 60.2
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 1.9e-72 276.6 206 58.7
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 2.5e-72 276.2 246 52.8
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 3.2e-72 275.8 196 61.2
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 4.2e-72 275.4 204 57.4
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 4.2e-72 275.4 210 61.0
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 2.1e-71 273.1 239 51.9
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 6.1e-71 271.6 204 56.9
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 6.1e-71 271.6 205 56.1
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 1.0e-70 270.8 167 72.5
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 1.3e-70 270.4 204 58.3
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.3e-70 270.4 208 57.2
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 2.3e-70 269.6 204 57.4
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 2.3e-70 269.6 204 57.4
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 6.7e-70 268.1 205 58.5
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 8.7e-70 267.7 209 62.7
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 1.1e-69 267.3 223 55.2
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 1.5e-69 266.9 200 64.5
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 2.5e-69 266.2 191 62.8
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 4.3e-69 265.4 204 54.9
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 4.3e-69 265.4 188 64.4
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 5.7e-69 265.0 204 54.9
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 5.7e-69 265.0 204 62.7
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-68 263.8 204 56.9
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 1.3e-68 263.8 209 58.4
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 1.6e-68 263.5 204 57.4
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 1.6e-68 263.5 204 57.4
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 4.8e-68 261.9 204 56.9
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 6.3e-68 261.5 239 51.0
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 6.3e-68 261.5 242 51.7
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 6.3e-68 261.5 242 51.7
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 6.3e-68 261.5 190 60.0
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.4e-67 260.4 204 56.9
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 4.1e-67 258.8 205 58.0
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 5.9e-66 255.0 208 57.2
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 7.7e-66 254.6 243 51.0
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 7.7e-66 254.6 230 58.7
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 2.9e-65 252.7 208 57.7
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 6.5e-65 251.5 230 50.4
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 8.5e-65 251.1 172 69.2
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 3.2e-64 249.2 167 65.9
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 5.5e-64 248.4 178 64.0
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 4.3e-61 238.8 210 55.2
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 4.8e-60 235.3 201 53.7
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 5.3e-59 231.9 230 50.4
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 1.2e-58 230.7 262 44.3
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 1.1e-56 224.2 189 51.3
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.4e-56 223.8 164 66.5
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 7.9e-55 218.0 249 49.4
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 1.1e-51 207.6 133 69.9
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 2.4e-51 206.5 207 49.8
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 7.0e-51 204.9 250 43.2
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.7e-49 200.3 205 50.7
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 8.5e-49 198.0 206 50.0
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 9.4e-48 194.5 198 44.9
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 1.4e-46 190.7 191 42.4
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 5.2e-46 188.7 131 69.5
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 4.4e-45 185.7 170 57.6
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 2.4e-43 179.9 108 72.2
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 1.5e-40 170.6 144 47.9
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 9.4e-32 141.4 110 62.7
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 9.4e-32 141.4 164 44.5
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 6.1e-31 138.7 102 60.8
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 1.2e-26 124.4 91 52.7
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.7e-26 123.2 110 66.4
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 8.9e-22 108.2 71 60.6
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 4.4e-21 105.9 117 51.3
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.2e-19 99.8 77 61.0
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 2.0e-18 97.1 61 67.2
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 2.0e-18 97.1 58 74.1
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 3.9e-17 92.8 92 50.0
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 1.9e-16 90.5 53 64.2
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 1.9e-16 90.5 77 59.7
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 7.3e-16 88.6 50 82.0
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.2e-15 87.8 56 64.3
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 3.4e-13 79.7 64 48.4
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 2.2e-12 77.0 62 56.5
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 3.2e-11 73.2 52 63.5
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 7.8e-10 68.6 33 78.8
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.0e-09 68.2 51 60.8
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 6.6e-09 65.5 122 32.0
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.3e-08 63.2 52 61.5
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 2.1e-07 60.5 149 30.2
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 8.0e-07 58.5 45 55.6


User provided reference genes

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