Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025826 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 6.0e-88 327.4 157 100.0
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 3.9e-71 271.6 135 98.5
CSS0046732 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 4.9e-66 254.6 150 79.3
Cfa020375 Carpinus fangiana HOM05D006458 ORTHO05D008433 6.5e-66 254.2 147 79.6
CiPaw.12G128400 Carya illinoinensis HOM05D006458 ORTHO05D008433 8.4e-66 253.8 139 84.2
Dinv22275 Davidia involucrata HOM05D006458 ORTHO05D008433 8.4e-66 253.8 144 81.9
CANSAT11G2101 Cannabis sativa HOM05D006458 ORTHO05D008433 1.9e-65 252.7 137 83.2
Hma1.2p1_0673F.1_g201190 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 1.9e-65 252.7 143 83.9
Manes.03G125000 Manihot esculenta HOM05D006458 ORTHO05D008433 3.2e-65 251.9 140 80.7
Lj1A870G91 Lonicera japonica HOM05D006458 ORTHO05D008433 9.3e-65 250.4 144 80.6
MD11G1221600 Malus domestica HOM05D006458 ORTHO05D008433 9.3e-65 250.4 141 79.4
CAN.G416.46 Capsicum annuum HOM05D006458 ORTHO05D008433 2.1e-64 249.2 125 88.8
Cc05_g13560 Coffea canephora HOM05D006458 ORTHO05D008433 2.1e-64 249.2 146 76.7
SGA_v2.0_scaffold7G03986 Striga asiatica HOM05D006458 ORTHO05D008433 2.1e-64 249.2 133 82.7
MD03G1206100 Malus domestica HOM05D006458 ORTHO05D008433 2.7e-64 248.8 146 76.7
Dinv40738 Davidia involucrata HOM05D000653 ORTHO05D008581 3.5e-64 248.4 135 84.4
Prupe.4G210000 Prunus persica HOM05D006458 ORTHO05D008433 3.5e-64 248.4 139 79.9
QL08p011516 Quercus lobata HOM05D006458 ORTHO05D008433 3.5e-64 248.4 140 80.0
Lj6g0005932 Lotus japonicus HOM05D006458 ORTHO05D008433 6.0e-64 247.7 143 79.7
Migut.M01780 Erythranthe guttata HOM05D006458 ORTHO05D008433 1.3e-63 246.5 137 81.8
PGSC0003DMG400001097 Solanum tuberosum HOM05D006458 ORTHO05D008433 1.3e-63 246.5 144 80.6
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 2.3e-63 245.7 125 88.8
Ciclev10009738m.g Citrus clementina HOM05D006458 ORTHO05D008433 3.0e-63 245.4 134 81.3
Solyc12g005150.2 Solanum lycopersicum HOM05D006458 ORTHO05D008433 3.0e-63 245.4 144 79.9
arahy.Tifrunner.gnm1.ann1.717SVK Arachis hypogaea HOM05D006458 ORTHO05D008433 3.9e-63 245.0 137 80.3
Hma1.2p1_1271F.1_g271730 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 3.9e-63 245.0 135 81.5
GSVIVG01037612001 Vitis vinifera HOM05D006458 ORTHO05D008433 3.9e-63 245.0 125 87.2
FvH4_3g22360 Fragaria vesca HOM05D006458 ORTHO05D008433 6.7e-63 244.2 139 79.1
FAN11G3779 Fragaria x ananassa HOM05D006458 ORTHO05D008433 6.7e-63 244.2 139 79.1
Nitab4.5_0004336g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 6.7e-63 244.2 131 84.7
Duzib170G0083 Durio zibethinus HOM05D006458 ORTHO05D008433 8.7e-63 243.8 134 79.9
Duzib170G1029 Durio zibethinus HOM05D006458 ORTHO05D008433 8.7e-63 243.8 134 79.9
Gorai.013G160500 Gossypium raimondii HOM05D006458 ORTHO05D008433 8.7e-63 243.8 134 79.1
Sed0021211 Sechium edule HOM05D006458 ORTHO05D008433 8.7e-63 243.8 147 75.5
Ca_14717_v3 Cicer arietinum L. HOM05D006458 ORTHO05D008433 1.5e-62 243.0 135 83.0
Glyma.08G314400 Glycine max HOM05D006458 ORTHO05D008433 1.5e-62 243.0 134 82.1
Sopen12g001140 Solanum pennellii HOM05D006458 ORTHO05D008433 1.5e-62 243.0 144 79.2
arahy.Tifrunner.gnm1.ann1.JDXG8H Arachis hypogaea HOM05D006458 ORTHO05D008433 1.9e-62 242.7 137 79.6
Phvul.006G040400 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 1.9e-62 242.7 133 82.0
TAR626G0847 Trochodendron aralioides HOM05D006458 ORTHO05D008433 1.9e-62 242.7 134 82.1
Glyma.18G099800 Glycine max HOM05D006458 ORTHO05D008433 2.5e-62 242.3 134 82.1
Gohir.A13G138900 Gossypium hirsutum HOM05D006458 ORTHO05D008433 2.5e-62 242.3 134 78.4
Lsat_1_v5_gn_7_109420 Lactuca sativa HOM05D006458 ORTHO05D008433 2.5e-62 242.3 123 87.8
Nitab4.5_0000653g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 2.5e-62 242.3 144 78.5
SalBow5G1944 Salvia bowleyana HOM05D006458 ORTHO05D008433 2.5e-62 242.3 144 76.4
DCAR_010044 Daucus carota HOM05D006458 ORTHO05D008433 3.3e-62 241.9 131 82.4
Nitab4.5_0000749g0130 Nicotiana tabacum HOM05D006458 ORTHO05D008433 3.3e-62 241.9 135 80.7
CsaV3_3G005240 Cucumis sativus L. HOM05D006458 ORTHO05D008433 4.3e-62 241.5 134 79.9
HanXRQChr11g0336301 Helianthus annuus HOM05D006458 ORTHO05D008433 5.7e-62 241.1 123 86.2
Medtr3g051110 Medicago truncatula HOM05D006458 ORTHO05D008433 5.7e-62 241.1 146 74.7
ClCG10G005510 Citrullus lanatus HOM05D006458 ORTHO05D008433 7.4e-62 240.7 139 78.4
Peaxi162Scf00450g00732 Petunia axillaris HOM05D006458 ORTHO05D008433 7.4e-62 240.7 139 79.1
Phvul.005G120100 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 7.4e-62 240.7 133 80.5
Potri.011G137100 Populus trichocarpa HOM05D006458 ORTHO05D008433 7.4e-62 240.7 134 81.3
VMungo0540G0475 Vigna mungo HOM05D006458 ORTHO05D008433 7.4e-62 240.7 134 80.6
Duzib170G0736 Durio zibethinus HOM05D006458 ORTHO05D008433 1.3e-61 240.0 134 78.4
Nitab4.5_0001604g0080 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.3e-61 240.0 140 79.3
Psat5g192520 Pisum sativum HOM05D006458 ORTHO05D008433 1.6e-61 239.6 142 76.1
Haze_09655 Corylus avellana HOM05D000653 ORTHO05D008581 2.1e-61 239.2 139 79.1
TAR629G1817 Trochodendron aralioides HOM05D006458 ORTHO05D008433 2.1e-61 239.2 140 78.6
Thecc.07G043100 Theobroma cacao HOM05D006458 ORTHO05D008433 2.8e-61 238.8 146 75.3
COL.COLO4_09642 Corchorus olitorius HOM05D000451 ORTHO05D008433 8.2e-61 237.3 126 83.3
vmacro09731 Vaccinium macrocarpon HOM05D006458 ORTHO05D008433 8.2e-61 237.3 181 66.9
Lalb_Chr15g0081001 Lupinus albus HOM05D006458 ORTHO05D008433 1.8e-60 236.1 139 77.0
Gohir.D13G143700 Gossypium hirsutum HOM05D006458 ORTHO05D008433 2.4e-60 235.7 134 76.9
Sabra16G0288000 Salix brachista HOM05D006458 ORTHO05D008433 2.4e-60 235.7 134 78.4
TWI39G1057 Tripterygium wilfordii HOM05D006458 ORTHO05D008433 2.4e-60 235.7 135 78.5
PSO541G1528 Papaver somniferum HOM05D006458 ORTHO05D008433 3.1e-60 235.3 132 80.3
FAN21G0544 Fragaria x ananassa HOM05D006458 ORTHO05D008433 4.1e-60 235.0 134 79.1
Aqoxy2G01543 Aquilegia oxysepala HOM05D006458 ORTHO05D008433 9.0e-60 233.8 142 72.5
RcHm_v2.0_Chr5g0038891 Rosa chinensis HOM05D006458 ORTHO05D008433 1.2e-59 233.4 139 75.5
Gorai.002G087500 Gossypium raimondii HOM05D006458 ORTHO05D008433 2.0e-59 232.6 132 76.5
MSTRG.15157 Avicennia marina HOM05D006458 ORTHO05D008433 2.6e-59 232.3 139 74.8
Gohir.D01G065600 Gossypium hirsutum HOM05D006458 ORTHO05D008433 2.6e-59 232.3 132 76.5
PSO675G3423 Papaver somniferum HOM05D006458 ORTHO05D008433 2.6e-59 232.3 132 79.5
Gohir.A01G078500 Gossypium hirsutum HOM05D006458 ORTHO05D008433 3.4e-59 231.9 132 77.3
Cpa.g.sc97.30 Carica papaya HOM05D006458 ORTHO05D008433 7.6e-59 230.7 139 77.7
PGR031G1917 Punica granatum HOM05D006458 ORTHO05D008433 1.7e-58 229.6 145 76.6
AUR62015736 Chenopodium quinoa HOM05D006458 ORTHO05D008433 2.5e-57 225.7 143 74.8
AUR62020475 Chenopodium quinoa HOM05D006458 ORTHO05D008433 3.2e-57 225.3 132 78.0
Sp6g16820 Schrenkiella parvula HOM05D006458 ORTHO05D008433 3.2e-57 225.3 155 69.0
Sc03g0008720 Simmondsia chinensis HOM05D006458 ORTHO05D008433 3.2e-57 225.3 126 81.7
RhsimUnG0251700 Rhododendron simsii HOM05D006458 ORTHO05D008433 9.3e-57 223.8 205 58.0
SalBow7G4274 Salvia bowleyana HOM05D006458 ORTHO05D008433 9.3e-57 223.8 160 65.0
Thhalv10014954m.g Eutrema salsugineum HOM05D006458 ORTHO05D008433 1.2e-56 223.4 132 75.0
MBI18_g24806_MAGBIO Magnolia biondii HOM05D006458 ORTHO05D008433 2.1e-56 222.6 142 74.6
Zm00001eb178010 Zea mays HOM05D006458 ORTHO05D008433 6.1e-56 221.1 132 75.8
CDE05G1373 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 7.9e-56 220.7 137 72.3
THA.LOC104817659 Tarenaya hassleriana HOM05D006458 ORTHO05D008433 1.3e-55 219.9 139 73.4
BcaB08g35852 Brassica carinata HOM05D006458 ORTHO05D008433 2.3e-55 219.2 144 69.4
Hund02079 Selenicereus undatus HOM05D006458 ORTHO05D008433 3.0e-55 218.8 145 71.7
CARHR268190 Cardamine hirsuta HOM05D006458 ORTHO05D008433 3.9e-55 218.4 137 73.0
BraA10t43315Z Brassica rapa HOM05D006458 ORTHO05D008433 5.1e-55 218.0 144 69.4
BcaC04g20291 Brassica carinata HOM05D006458 ORTHO05D008433 6.7e-55 217.6 144 69.4
ATR0752G141 Amborella trichopoda HOM05D006458 ORTHO05D008433 1.1e-54 216.9 130 72.3
A10p12190 Brassica napus HOM05D006458 ORTHO05D008433 1.5e-54 216.5 144 69.4
Aa31LG3G10770 Aethionema arabicum HOM05D006458 ORTHO05D008433 1.9e-54 216.1 123 78.0
Ah.04g165770 Amaranthus hybridus HOM05D006458 ORTHO05D008433 1.9e-54 216.1 140 72.9
Os02g0317800 Oryza sativa ssp. japonica HOM05D006458 ORTHO05D008433 1.9e-54 216.1 131 73.3
AL8G30300 Arabidopsis lyrata HOM05D006458 ORTHO05D008433 2.5e-54 215.7 137 71.5
EL10Ac4g07850 Beta vulgaris HOM05D006458 ORTHO05D008433 2.5e-54 215.7 132 75.0
C09p45410 Brassica napus HOM05D006458 ORTHO05D008433 3.3e-54 215.3 125 77.6
CDE02G3449 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 4.3e-54 214.9 130 74.6
AT5G54855 Arabidopsis thaliana HOM05D006458 ORTHO05D008433 5.7e-54 214.5 137 71.5
Carub.0008s1515 Capsella rubella HOM05D006458 ORTHO05D008433 5.7e-54 214.5 137 71.5
Nn1g03576 Nelumbo nucifera HOM05D006458 ORTHO05D008433 3.1e-52 208.8 116 81.9
unitig_8.g4602 Utricularia gibba HOM05D006458 ORTHO05D008433 5.3e-52 208.0 130 73.1
HPP92_005293 Vanilla planifolia HOM05D006458 ORTHO05D008433 9.4e-49 197.2 134 65.7
Sabra11G0123000 Salix brachista HOM05D006458 ORTHO05D008433 2.6e-46 189.1 165 57.6
MELO3C031911.2 Cucumis melo HOM05D006458 ORTHO05D008433 8.2e-45 184.1 101 82.2
Oeu062597.2 Olea europaea HOM05D006458 ORTHO05D008433 8.2e-45 184.1 94 85.1
ECA236G2465 Erigeron canadensis HOM05D000653 ORTHO05D008581 1.1e-44 183.7 96 84.4
Eucgr.F03456 Eucalyptus grandis HOM05D006458 ORTHO05D008433 4.5e-43 178.3 93 84.9
SalBow7G3069 Salvia bowleyana HOM05D006458 ORTHO05D008433 1.7e-42 176.4 96 80.2
Nitab4.5_0000296g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.8e-39 166.4 97 76.3
Atru.chr2.3327 Acer truncatum HOM05D006458 ORTHO05D008433 3.3e-38 162.2 96 78.1
SEGI_29279 Sequoiadendron giganteum HOM05D006458 ORTHO05D008433 2.9e-34 149.1 103 72.8
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 6.8e-23 111.3 110 57.3
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 4.7e-16 88.6 43 86.0
Atru.chr2.3388 Acer truncatum HOM05D006458 ORTHO05D008433 3.0e-15 85.9 51 76.5
FAN25G2931 Fragaria x ananassa HOM05D006458 ORTHO05D008433 2.3e-10 69.7 35 94.3
TPR.G13209 Trifolium pratense HOM05D006458 ORTHO05D008433 6.6e-10 68.2 42 66.7
RcHm_v2.0_Chr5g0038871 Rosa chinensis HOM05D006458 ORTHO05D008433 3.3e-09 65.9 43 58.1
Nitab4.5_0000286g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 5.2e-07 58.5 52 57.7
MD13G1229600 Malus domestica HOM05D006458 ORTHO05D245398 8.9e-07 57.8 49 55.1


User provided reference genes

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