Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025806 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 2.0e-85 318.9 149 100.0
CSS0044145 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 3.3e-80 301.6 163 87.1
CSS0020060 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 1.6e-21 106.7 53 86.8
CSS0030774 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 1.6e-21 106.7 53 86.8
CSS0015566 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 8.4e-15 84.3 57 61.4
CSS0008176 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 1.1e-14 84.0 64 56.2
CSS0017977 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 1.1e-14 84.0 55 63.6
CSS0029440 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 1.1e-14 84.0 64 56.2
CSS0041206 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 1.1e-14 84.0 64 56.2
CSS0048347 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 1.4e-14 83.6 64 56.2
CSS0045597 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 2.4e-14 82.8 57 59.6
CSS0034492 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 7.1e-14 81.3 64 54.7
Dinv16998 Davidia involucrata HOM05D002515 ORTHO05D002722 7.1e-14 81.3 77 50.6
Dinv43153 Davidia involucrata HOM05D002515 ORTHO05D002722 7.1e-14 81.3 77 50.6
Rhsim13G0082900 Rhododendron simsii HOM05D002515 ORTHO05D002722 6.7e-12 74.7 67 55.2
vmacro03074 Vaccinium macrocarpon HOM05D002515 ORTHO05D002722 8.7e-12 74.3 77 49.4
CSS0039820 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 1.1e-11 73.9 96 44.8
CSS0049652 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 2.5e-11 72.8 105 43.8
Actinidia07036 Actinidia chinensis HOM05D002515 ORTHO05D002722 7.4e-11 71.2 55 58.2
CSS0024264 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 7.4e-11 71.2 57 56.1
Duzib268G1344 Durio zibethinus HOM05D000150 ORTHO05D000108 1.6e-10 70.1 45 68.9
CiPaw.05G146200 Carya illinoinensis HOM05D000150 ORTHO05D000108 2.8e-10 69.3 41 75.6
Thecc.02G242200 Theobroma cacao HOM05D000150 ORTHO05D000108 2.8e-10 69.3 53 60.4
CSS0016698 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 6.2e-10 68.2 108 40.7
CSS0027481 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 6.2e-10 68.2 108 40.7
Gohir.D05G321300 Gossypium hirsutum HOM05D000150 ORTHO05D000108 6.2e-10 68.2 45 66.7
Gorai.009G344800 Gossypium raimondii HOM05D000150 ORTHO05D000108 6.2e-10 68.2 45 66.7
Gorai.011G176600 Gossypium raimondii HOM05D000150 ORTHO05D000108 6.2e-10 68.2 45 66.7
Rhsim12G0050400 Rhododendron simsii HOM05D000150 ORTHO05D000108 6.2e-10 68.2 52 59.6
Atru.chr11.1958 Acer truncatum HOM05D000150 ORTHO05D000108 1.1e-09 67.4 45 64.4
QL03p062770 Quercus lobata HOM05D000150 ORTHO05D000108 1.4e-09 67.0 45 68.9
QL03p066769 Quercus lobata HOM05D000150 ORTHO05D000108 1.4e-09 67.0 45 68.9
QL03p066829 Quercus lobata HOM05D000150 ORTHO05D000108 1.4e-09 67.0 45 68.9
vmacro01198 Vaccinium macrocarpon HOM05D000150 ORTHO05D000108 1.4e-09 67.0 45 64.4
Actinidia37204 Actinidia chinensis HOM05D002515 ORTHO05D002722 1.8e-09 66.6 54 57.4
Gohir.A01G142101 Gossypium hirsutum HOM05D000150 ORTHO05D000108 1.8e-09 66.6 45 64.4
Gohir.A05G319100 Gossypium hirsutum HOM05D000150 ORTHO05D000108 1.8e-09 66.6 45 64.4
Gohir.D01G133300 Gossypium hirsutum HOM05D000150 ORTHO05D000108 1.8e-09 66.6 45 64.4
Gorai.002G164900 Gossypium raimondii HOM05D000150 ORTHO05D000108 1.8e-09 66.6 45 64.4
COL.COLO4_37896 Corchorus olitorius HOM05D000150 ORTHO05D000108 3.1e-09 65.9 45 64.4
Prupe.1G260100 Prunus persica HOM05D000150 ORTHO05D000108 4.0e-09 65.5 45 66.7
CSS0031957 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 5.3e-09 65.1 45 68.9
MD16G1086300 Malus domestica HOM05D000150 ORTHO05D000108 5.3e-09 65.1 45 64.4
Dinv31113 Davidia involucrata HOM05D000150 ORTHO05D000108 6.9e-09 64.7 45 66.7
FvH4_4g35051 Fragaria vesca HOM05D000150 ORTHO05D000108 6.9e-09 64.7 45 62.2
FAN12G2289 Fragaria x ananassa HOM05D000150 ORTHO05D000108 6.9e-09 64.7 45 62.2
FAN22G0665 Fragaria x ananassa HOM05D000150 ORTHO05D000108 6.9e-09 64.7 45 60.0
FAN17G0029 Fragaria x ananassa HOM05D000150 ORTHO05D000108 9.0e-09 64.3 45 60.0
RcHm_v2.0_Chr4g0444591 Rosa chinensis HOM05D000150 ORTHO05D000108 9.0e-09 64.3 45 62.2
RcHm_v2.0_Chr4g0444641 Rosa chinensis HOM05D000150 ORTHO05D000108 1.5e-08 63.5 45 62.2
CANSAT01G0622 Cannabis sativa HOM05D000150 ORTHO05D000108 2.0e-08 63.2 45 62.2
Lju50A24T52 Lonicera japonica HOM05D000150 ORTHO05D000108 2.0e-08 63.2 45 64.4
Ciclev10031201m.g Citrus clementina HOM05D000150 ORTHO05D000108 3.4e-08 62.4 45 55.6
FvH4_4g35050 Fragaria vesca HOM05D000150 ORTHO05D000108 3.4e-08 62.4 45 60.0
AUR62026575 Chenopodium quinoa HOM05D000150 ORTHO05D000108 5.8e-08 61.6 62 48.4
Ca_18092_v3 Cicer arietinum L. HOM05D000150 ORTHO05D000108 5.8e-08 61.6 45 60.0
ECA247G2589 Erigeron canadensis HOM05D002515 ORTHO05D002722 7.6e-08 61.2 57 43.9
Lalb_Chr16g0382481 Lupinus albus HOM05D000150 ORTHO05D000108 7.6e-08 61.2 45 62.2
Psat2g114240 Pisum sativum HOM05D000150 ORTHO05D000108 7.6e-08 61.2 45 62.2
GSVIVG01020177001 Vitis vinifera HOM05D000150 ORTHO05D000108 9.9e-08 60.8 45 62.2
Duzib248G1663 Durio zibethinus HOM05D000150 ORTHO05D000108 1.3e-07 60.5 45 57.8
Migut.L01449 Erythranthe guttata HOM05D000150 ORTHO05D000108 1.3e-07 60.5 41 63.4
Glyma.01G036000 Glycine max HOM05D000150 ORTHO05D000108 1.7e-07 60.1 45 60.0
Haze_12103 Corylus avellana HOM05D000150 ORTHO05D000108 2.2e-07 59.7 45 66.7
Haze_12135 Corylus avellana HOM05D000150 ORTHO05D000108 2.2e-07 59.7 45 66.7
Gohir.D10G156045 Gossypium hirsutum HOM05D000150 ORTHO05D000108 2.2e-07 59.7 45 57.8
Cfa009100 Carpinus fangiana HOM05D000150 ORTHO05D000108 2.9e-07 59.3 45 62.2
TPR.G13511 Trifolium pratense HOM05D000150 ORTHO05D000108 2.9e-07 59.3 45 60.0
arahy.Tifrunner.gnm1.ann1.X4ZQ0T Arachis hypogaea HOM05D000150 ORTHO05D000108 4.9e-07 58.5 45 55.6
Glyma.02G029900 Glycine max HOM05D000150 ORTHO05D000108 4.9e-07 58.5 45 57.8
Lj2g0002776 Lotus japonicus HOM05D000150 ORTHO05D000108 4.9e-07 58.5 45 55.6
Oeu019195.1 Olea europaea HOM05D006354 ORTHO05D007773 4.9e-07 58.5 56 41.1
EL10Ac2g04589 Beta vulgaris HOM05D000150 ORTHO05D000108 6.4e-07 58.2 93 36.6
Medtr5g035560 Medicago truncatula HOM05D000150 ORTHO05D000108 6.4e-07 58.2 45 57.8
Medtr5g035580 Medicago truncatula HOM05D000150 ORTHO05D000108 6.4e-07 58.2 45 57.8
Phvul.002G075200 Phaseolus vulgaris HOM05D000150 ORTHO05D000108 6.4e-07 58.2 45 57.8
DCAR_005973 Daucus carota HOM05D002515 ORTHO05D002722 8.4e-07 57.8 65 43.1
PSO675G2670 Papaver somniferum HOM05D000150 ORTHO05D000108 8.4e-07 57.8 45 53.3
PSO732G0792 Papaver somniferum HOM05D000150 ORTHO05D000108 8.4e-07 57.8 45 55.6
EL10Ac5g10581 Beta vulgaris HOM05D000150 ORTHO05D000108 1.1e-06 57.4 60 43.3
Cpa.g.sc5.342 Carica papaya HOM05D000150 ORTHO05D000108 1.1e-06 57.4 45 57.8
THA.LOC104822956 Tarenaya hassleriana HOM05D000150 ORTHO05D000108 1.1e-06 57.4 45 57.8
Ah.03g132330 Amaranthus hybridus HOM05D000150 ORTHO05D000108 1.4e-06 57.0 34 70.6
arahy.Tifrunner.gnm1.ann1.IAPX52 Arachis hypogaea HOM05D000150 ORTHO05D000108 1.4e-06 57.0 44 54.5
PGSC0003DMG400009525 Solanum tuberosum HOM05D000150 ORTHO05D000108 1.4e-06 57.0 59 44.1
PGSC0003DMG400009528 Solanum tuberosum HOM05D000150 ORTHO05D000108 1.4e-06 57.0 59 40.7
SGA_v2.0_scaffold166G38339 Striga asiatica HOM05D000150 ORTHO05D000108 1.4e-06 57.0 45 53.3
EL10Ac6g13727 Beta vulgaris HOM05D000150 ORTHO05D000108 1.9e-06 56.6 93 34.4
Manes.05G091100 Manihot esculenta HOM05D000150 ORTHO05D000108 1.9e-06 56.6 45 55.6
Thecc.01G207200 Theobroma cacao HOM05D000150 ORTHO05D000108 1.9e-06 56.6 59 44.1
Aa31LG7G7880 Aethionema arabicum HOM05D000150 ORTHO05D000108 2.4e-06 56.2 46 58.7
ATR0743G166 Amborella trichopoda HOM05D000150 ORTHO05D000108 2.4e-06 56.2 45 51.1
MSTRG.7871 Avicennia marina HOM05D000150 ORTHO05D000108 2.4e-06 56.2 45 57.8
ECA246G2568 Erigeron canadensis HOM05D000150 ORTHO05D000108 2.4e-06 56.2 54 50.0
SalBow2G3328 Salvia bowleyana HOM05D000150 ORTHO05D000108 2.4e-06 56.2 41 58.5
TAR629G0002 Trochodendron aralioides HOM05D000150 ORTHO05D000108 2.4e-06 56.2 33 63.6
Nitab4.5_0008193g0040 Nicotiana tabacum HOM05D000150 ORTHO05D000108 3.2e-06 55.8 59 42.4
Sopen08g002310 Solanum pennellii HOM05D000150 ORTHO05D000108 3.2e-06 55.8 59 42.4
VMungo1215G0954 Vigna mungo HOM05D000150 ORTHO05D000108 3.2e-06 55.8 42 57.1
HanXRQChr04g0105731 Helianthus annuus HOM05D002515 ORTHO05D002722 4.2e-06 55.5 57 50.9
Oeu001656.1 Olea europaea HOM05D000150 ORTHO05D000108 4.2e-06 55.5 45 51.1
Sp1g21430 Schrenkiella parvula HOM05D000150 ORTHO05D000108 4.2e-06 55.5 46 56.5
Cc11_g14210 Coffea canephora HOM05D000150 ORTHO05D000108 5.5e-06 55.1 45 55.6
Manes.01G196500 Manihot esculenta HOM05D000150 ORTHO05D000108 5.5e-06 55.1 45 55.6
Solyc08g006350.3 Solanum lycopersicum HOM05D000150 ORTHO05D000108 5.5e-06 55.1 59 44.1
GSVIVG01024972001 Vitis vinifera HOM05D002515 ORTHO05D002722 5.5e-06 55.1 53 49.1
Nn1g09512 Nelumbo nucifera HOM05D000150 ORTHO05D000108 7.1e-06 54.7 43 55.8
Nitab4.5_0008193g0010 Nicotiana tabacum HOM05D000150 ORTHO05D000108 7.1e-06 54.7 61 41.0
Solyc08g006330.3 Solanum lycopersicum HOM05D000150 ORTHO05D000108 7.1e-06 54.7 59 42.4
Solyc08g006410.4 Solanum lycopersicum HOM05D000150 ORTHO05D000108 7.1e-06 54.7 59 42.4
Sopen08g002330 Solanum pennellii HOM05D000150 ORTHO05D000108 7.1e-06 54.7 59 42.4
TAR636G2365 Trochodendron aralioides HOM05D000150 ORTHO05D000108 7.1e-06 54.7 58 34.5
A09p40790 Brassica napus HOM05D000150 ORTHO05D000108 9.3e-06 54.3 46 56.5
BraA09t39573Z Brassica rapa HOM05D000150 ORTHO05D000108 9.3e-06 54.3 46 56.5
AUR62028637 Chenopodium quinoa HOM05D000150 ORTHO05D000108 9.3e-06 54.3 62 45.2
Nitab4.5_0005722g0010 Nicotiana tabacum HOM05D000150 ORTHO05D000108 9.3e-06 54.3 45 53.3
Peaxi162Scf00421g00826 Petunia axillaris HOM05D000150 ORTHO05D000108 9.3e-06 54.3 45 53.3
TAR362G0749 Trochodendron aralioides HOM05D000150 ORTHO05D000108 9.3e-06 54.3 58 46.6
VMungo0251G3120 Vigna mungo HOM05D000150 ORTHO05D000108 9.3e-06 54.3 51 41.2


User provided reference genes

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