Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025805 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 2.5e-84 315.5 166 100.0
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 6.1e-83 310.8 166 98.8
Actinidia08623 Actinidia chinensis HOM05D004891 ORTHO05D005997 3.3e-60 235.3 176 72.7
Actinidia34190 Actinidia chinensis HOM05D004891 ORTHO05D005997 8.1e-59 230.7 176 71.0
vmacro06579 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 1.2e-57 226.9 170 70.0
vmacro23247 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 1.2e-57 226.9 170 70.0
Rhsim03G0198300 Rhododendron simsii HOM05D004891 ORTHO05D005997 4.9e-56 221.5 169 69.2
Hma1.2p1_0327F.1_g126710 Hydrangea macrophylla HOM05D004891 ORTHO05D005997 4.6e-54 214.9 175 69.1
Potri.015G022900 Populus trichocarpa HOM05D004891 ORTHO05D005997 4.6e-54 214.9 173 70.5
TAR375G0232 Trochodendron aralioides HOM05D004891 ORTHO05D005997 7.8e-54 214.2 177 67.8
Actinidia03156 Actinidia chinensis HOM05D004891 ORTHO05D005997 3.0e-53 212.2 173 69.9
Dinv28341 Davidia involucrata HOM05D004891 ORTHO05D005997 5.1e-53 211.5 176 69.3
GSVIVG01028731001 Vitis vinifera HOM05D004891 ORTHO05D005997 8.1e-51 204.1 177 65.5
Manes.14G018900 Manihot esculenta HOM05D004891 ORTHO05D005997 2.4e-50 202.6 172 68.6
Cfa016358 Carpinus fangiana HOM05D004891 ORTHO05D005997 3.1e-50 202.2 173 66.5
Potri.012G032200 Populus trichocarpa HOM05D004891 ORTHO05D005997 3.1e-50 202.2 171 66.1
Sabra12G0021600 Salix brachista HOM05D004891 ORTHO05D005997 6.9e-50 201.1 171 64.9
Duzib084G0775 Durio zibethinus HOM05D004891 ORTHO05D005997 1.5e-49 199.9 171 64.9
Sabra15G0017200 Salix brachista HOM05D004891 ORTHO05D005997 3.4e-49 198.7 161 69.6
Haze_00106 Corylus avellana HOM05D004891 ORTHO05D005997 4.4e-49 198.4 173 65.3
Nitab4.5_0000473g0100 Nicotiana tabacum HOM05D004891 ORTHO05D005997 5.8e-49 198.0 176 63.1
FAN01G2480 Fragaria x ananassa HOM05D004891 ORTHO05D005997 7.6e-49 197.6 173 66.5
FAN03G3090 Fragaria x ananassa HOM05D004891 ORTHO05D005997 7.6e-49 197.6 173 65.9
QL09p011070 Quercus lobata HOM05D004891 ORTHO05D005997 7.6e-49 197.6 176 65.3
RcHm_v2.0_Chr1g0380031 Rosa chinensis HOM05D004891 ORTHO05D005997 7.6e-49 197.6 173 66.5
COL.COLO4_35665 Corchorus olitorius HOM05D004891 ORTHO05D005997 1.7e-48 196.4 171 63.7
FvH4_7g30940 Fragaria vesca HOM05D004891 ORTHO05D005997 2.9e-48 195.7 173 65.9
FAN06G4508 Fragaria x ananassa HOM05D004891 ORTHO05D005997 2.9e-48 195.7 173 65.9
Ciclev10005604m.g Citrus clementina HOM05D004891 ORTHO05D005997 3.8e-48 195.3 173 64.2
Gorai.008G271100 Gossypium raimondii HOM05D004891 ORTHO05D005997 6.4e-48 194.5 170 62.9
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 8.4e-48 194.1 173 64.2
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 8.4e-48 194.1 173 64.2
Gohir.A12G252100 Gossypium hirsutum HOM05D004891 ORTHO05D005997 8.4e-48 194.1 170 62.9
Gohir.D12G253400 Gossypium hirsutum HOM05D004891 ORTHO05D005997 8.4e-48 194.1 170 62.9
Thecc.03G192100 Theobroma cacao HOM05D004891 ORTHO05D005997 8.4e-48 194.1 173 64.7
FAN06G0473 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.4e-47 193.4 173 65.3
Nitab4.5_0000472g0010 Nicotiana tabacum HOM05D004891 ORTHO05D005997 4.2e-47 191.8 176 60.8
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 1.6e-46 189.9 177 63.3
Prupe.2G306500 Prunus persica HOM05D004891 ORTHO05D005997 1.6e-46 189.9 170 65.9
PSO170G4664 Papaver somniferum HOM05D004891 ORTHO05D005997 2.1e-46 189.5 178 61.8
Cpa.g.sc3.45 Carica papaya HOM05D004891 ORTHO05D005997 3.5e-46 188.7 171 60.8
MSTRG.8493 Avicennia marina HOM05D004891 ORTHO05D005997 6.0e-46 188.0 176 59.7
PSO063G3645 Papaver somniferum HOM05D004891 ORTHO05D005997 1.7e-45 186.4 176 60.8
PGSC0003DMG400009098 Solanum tuberosum HOM05D004891 ORTHO05D005997 3.9e-45 185.3 175 61.1
CAN.G108.22 Capsicum annuum HOM05D004891 ORTHO05D005997 5.1e-45 184.9 175 58.3
Cc02_g01930 Coffea canephora HOM05D004891 ORTHO05D005997 6.6e-45 184.5 175 61.7
Lj3A911G21 Lonicera japonica HOM05D004891 ORTHO05D005997 1.1e-44 183.7 176 59.7
Sopen03g003400 Solanum pennellii HOM05D004891 ORTHO05D005997 1.1e-44 183.7 176 60.2
Sopen03g003460 Solanum pennellii HOM05D004891 ORTHO05D005997 1.1e-44 183.7 176 60.2
CiPaw.05G258300 Carya illinoinensis HOM05D004891 ORTHO05D005997 1.5e-44 183.3 173 61.8
MBI06_g22405_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D005997 1.5e-44 183.3 176 60.2
TWI23G0467 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 7.3e-44 181.0 166 61.4
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 1.6e-43 179.9 166 60.2
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 2.1e-43 179.5 171 60.8
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 2.8e-43 179.1 170 60.6
Glyma.14G123700 Glycine max HOM05D004891 ORTHO05D005997 6.2e-43 177.9 171 59.6
MD01G1214600 Malus domestica HOM05D004891 ORTHO05D005997 8.1e-43 177.6 167 62.3
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 1.4e-42 176.8 172 62.2
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 6.9e-42 174.5 177 57.6
VMungo0647G1360 Vigna mungo HOM05D004891 ORTHO05D005997 2.0e-41 172.9 172 59.9
CiPaw.06G007100 Carya illinoinensis HOM05D004891 ORTHO05D005997 2.6e-41 172.6 131 73.3
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 2.6e-41 172.6 175 60.6
Aqoxy5G04112 Aquilegia oxysepala HOM05D004891 ORTHO05D005997 4.5e-41 171.8 138 67.4
Lj1g0012174 Lotus japonicus HOM05D004891 ORTHO05D005997 5.8e-41 171.4 169 60.9
SalBow2G0402 Salvia bowleyana HOM05D004891 ORTHO05D005997 5.8e-41 171.4 168 58.9
Oeu037109.1 Olea europaea HOM05D004891 ORTHO05D005997 9.9e-41 170.6 157 57.3
TWI14G0964 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 9.9e-41 170.6 172 58.7
AUR62031485 Chenopodium quinoa HOM05D004891 ORTHO05D005997 1.3e-40 170.2 173 55.5
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 3.8e-40 168.7 174 59.8
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 3.8e-40 168.7 172 58.1
TAR374G1584 Trochodendron aralioides HOM05D004891 ORTHO05D005997 4.9e-40 168.3 133 67.7
AUR62021048 Chenopodium quinoa HOM05D004891 ORTHO05D005997 8.4e-40 167.5 173 54.9
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 1.1e-39 167.2 174 59.8
PGR142G0227 Punica granatum HOM05D004891 ORTHO05D005997 1.1e-39 167.2 173 59.5
DCAR_014529 Daucus carota HOM05D004891 ORTHO05D005997 1.9e-39 166.4 177 55.9
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 5.4e-39 164.9 171 53.8
MSTRG.23354 Avicennia marina HOM05D004891 ORTHO05D005997 7.1e-39 164.5 176 54.5
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 1.2e-38 163.7 172 58.1
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 1.6e-38 163.3 172 58.7
Sed0021890 Sechium edule HOM05D004891 ORTHO05D005997 1.6e-38 163.3 169 55.6
ClCG05G008660 Citrullus lanatus HOM05D004891 ORTHO05D005997 3.5e-38 162.2 176 55.1
MELO3C006974.2 Cucumis melo HOM05D004891 ORTHO05D005997 3.5e-38 162.2 172 55.8
Manes.06G156500 Manihot esculenta HOM05D004891 ORTHO05D005997 3.5e-38 162.2 173 58.4
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 3.5e-38 162.2 127 70.1
CsaV3_3G021850 Cucumis sativus L. HOM05D004891 ORTHO05D005997 7.9e-38 161.0 174 55.2
EL10Ac3g05352 Beta vulgaris HOM05D004891 ORTHO05D005997 1.3e-37 160.2 172 55.2
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 1.8e-37 159.8 169 56.2
Oeu024464.1 Olea europaea HOM05D004891 ORTHO05D005997 2.3e-37 159.5 175 52.6
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 1.1e-36 157.1 168 54.2
Carub.0008s1346 Capsella rubella HOM05D004891 ORTHO05D005997 1.5e-36 156.8 174 51.1
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 1.3e-35 153.7 173 52.0
BcaB01g04239 Brassica carinata HOM05D004891 ORTHO05D005997 3.7e-35 152.1 166 48.2
BcaB08g35688 Brassica carinata HOM05D004891 ORTHO05D005997 4.8e-35 151.8 171 49.7
Aa31LG3G9250 Aethionema arabicum HOM05D004891 ORTHO05D005997 6.2e-35 151.4 166 53.0
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 6.2e-35 151.4 167 55.1
Sed0007260 Sechium edule HOM05D004891 ORTHO05D005997 8.1e-35 151.0 172 52.9
Actinidia34193 Actinidia chinensis HOM05D004891 ORTHO05D005997 1.1e-34 150.6 176 54.0
Ah.07g206050 Amaranthus hybridus HOM05D004891 ORTHO05D005997 1.4e-34 150.2 172 52.9
Hund11687 Selenicereus undatus HOM05D004891 ORTHO05D005997 1.8e-34 149.8 166 53.0
A03p15250 Brassica napus HOM05D004891 ORTHO05D005997 2.4e-34 149.4 166 48.8
BraA03t10818Z Brassica rapa HOM05D004891 ORTHO05D005997 3.1e-34 149.1 166 48.8
Sp6g15430 Schrenkiella parvula HOM05D004891 ORTHO05D005997 3.1e-34 149.1 174 48.9
C03p17830 Brassica napus HOM05D004891 ORTHO05D005997 4.0e-34 148.7 166 47.6
BolC3t14190H Brassica oleracea HOM05D004891 ORTHO05D005997 4.0e-34 148.7 166 47.6
Lj1C1012T12 Lonicera japonica HOM05D004891 ORTHO05D005997 9.0e-34 147.5 176 54.5
ECA238G3691 Erigeron canadensis HOM05D004891 ORTHO05D005997 2.0e-33 146.4 177 52.0
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 3.4e-33 145.6 167 49.7
Hund11688 Selenicereus undatus HOM05D004891 ORTHO05D005997 3.4e-33 145.6 166 51.8
Thhalv10014380m.g Eutrema salsugineum HOM05D004891 ORTHO05D005997 4.5e-33 145.2 172 47.1
Hund04825 Selenicereus undatus HOM05D004891 ORTHO05D005997 5.8e-33 144.8 171 53.2
AL8G27930 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 1.7e-32 143.3 177 48.6
AT5G53280 Arabidopsis thaliana HOM05D004891 ORTHO05D005997 4.9e-32 141.7 177 46.9
BcaC01g06235 Brassica carinata HOM05D004891 ORTHO05D005997 1.4e-31 140.2 135 49.6
CARHR266320 Cardamine hirsuta HOM05D004891 ORTHO05D005997 1.6e-30 136.7 177 45.2
Lsat_1_v5_gn_2_134260 Lactuca sativa HOM05D004891 ORTHO05D005997 5.1e-29 131.7 176 50.6
BcaC04g20477 Brassica carinata HOM05D004891 ORTHO05D005997 8.7e-29 131.0 166 45.8
C09p43070 Brassica napus HOM05D004891 ORTHO05D005997 8.7e-29 131.0 166 45.8
BolC9t57178H Brassica oleracea HOM05D004891 ORTHO05D005997 8.7e-29 131.0 166 45.8
ATR1093G054 Amborella trichopoda HOM05D004891 ORTHO05D005997 1.1e-28 130.6 188 50.5
HPP92_024018 Vanilla planifolia HOM05D004891 ORTHO05D005997 1.5e-28 130.2 170 47.6
BraA10t43162Z Brassica rapa HOM05D004891 ORTHO05D005997 1.9e-28 129.8 166 46.4
CDE10G0607 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 4.3e-28 128.6 137 53.3
CDE10G1089 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 1.3e-27 127.1 177 46.9
A10p10800 Brassica napus HOM05D004891 ORTHO05D005997 1.6e-27 126.7 166 45.8
Zm00001eb237900 Zea mays HOM05D004891 ORTHO05D005997 1.1e-26 124.0 115 59.1
Oeu036883.1 Olea europaea HOM05D004891 ORTHO05D005997 1.4e-26 123.6 175 47.4
Zm00001eb203870 Zea mays HOM05D004891 ORTHO05D005997 5.3e-26 121.7 172 43.0
Dinv35303 Davidia involucrata HOM05D004891 ORTHO05D005997 9.0e-26 120.9 79 79.7
Os06g0506000 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 4.2e-23 112.1 125 50.4
AL8G27980 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 9.3e-23 110.9 152 43.4
Os01g0224200 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 9.0e-18 94.4 174 40.2
TAR629G2914 Trochodendron aralioides HOM05D004891 ORTHO05D005997 7.2e-15 84.7 64 68.8
unitig_736.g22889 Utricularia gibba HOM05D004891 ORTHO05D005997 9.4e-15 84.3 169 39.1
Zm00001eb338960 Zea mays HOM05D004891 ORTHO05D005997 1.3e-11 73.9 169 39.1
Thecc.01G303500 Theobroma cacao HOM05D004891 ORTHO05D005997 3.1e-10 69.3 46 78.3
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 1.4e-07 60.5 129 33.3
Solyc03g007440.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 1.9e-07 60.1 176 34.7
Solyc03g007500.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 4.2e-07 58.9 176 34.1
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.6e-06 57.0 90 41.1
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.6e-06 55.8 105 36.2
Peaxi162Scf00904g00326 Petunia axillaris HOM05D004891 ORTHO05D005997 6.1e-06 55.1 161 32.9
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 7.9e-06 54.7 173 27.7


User provided reference genes

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