Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025796 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.2e-71 273.1 139 100.0
CSS0005611 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 2.7e-55 218.8 145 80.0
CSS0014542 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 5.7e-50 201.1 145 77.9
CSS0035788 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 2.4e-48 195.7 145 75.9
CSS0012854 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 4.9e-41 171.4 118 76.3
CSS0044643 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 3.5e-39 165.2 136 66.9
CSS0020186 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.5e-37 159.8 136 64.7
CSS0009838 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 8.3e-33 144.1 89 87.6
Actinidia13982 Actinidia chinensis HOM05D003429 ORTHO05D003873 5.6e-29 131.3 89 78.7
Actinidia14028 Actinidia chinensis HOM05D003429 ORTHO05D003873 5.6e-29 131.3 89 78.7
Actinidia17975 Actinidia chinensis HOM05D003429 ORTHO05D003873 5.6e-29 131.3 89 78.7
Actinidia37867 Actinidia chinensis HOM05D003429 ORTHO05D003873 5.6e-29 131.3 89 78.7
RhsimUnG0020700 Rhododendron simsii HOM05D003429 ORTHO05D003873 4.7e-28 128.3 105 70.5
vmacro07588 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 6.2e-28 127.9 105 69.5
Solyc01g056520.3 Solanum lycopersicum HOM05D003429 ORTHO05D003873 6.8e-19 97.8 89 62.9
Sopen01g020360 Solanum pennellii HOM05D003429 ORTHO05D003873 6.8e-19 97.8 89 62.9
Peaxi162Scf00139g01028 Petunia axillaris HOM05D003429 ORTHO05D003873 1.2e-18 97.1 89 61.8
Nitab4.5_0002094g0090 Nicotiana tabacum HOM05D003429 ORTHO05D003873 1.5e-18 96.7 89 61.8
Nn7g37083 Nelumbo nucifera HOM05D003429 ORTHO05D003873 3.4e-18 95.5 88 59.1
Nitab4.5_0000211g0060 Nicotiana tabacum HOM05D003429 ORTHO05D003873 3.4e-18 95.5 89 61.8
Migut.B01173 Erythranthe guttata HOM05D003429 ORTHO05D003873 4.4e-18 95.1 89 61.8
TAR629G1055 Trochodendron aralioides HOM05D003429 ORTHO05D003873 4.4e-18 95.1 89 60.7
GSVIVG01025856001 Vitis vinifera HOM05D003429 ORTHO05D003873 7.6e-18 94.4 90 56.7
MD02G1207800 Malus domestica HOM05D003429 ORTHO05D003873 2.9e-17 92.4 89 58.4
Prupe.2G050900 Prunus persica HOM05D003429 ORTHO05D003873 2.9e-17 92.4 89 59.6
Prupe.2G051400 Prunus persica HOM05D003429 ORTHO05D003873 2.9e-17 92.4 89 59.6
arahy.Tifrunner.gnm1.ann1.3RNG04 Arachis hypogaea HOM05D003429 ORTHO05D003873 4.9e-17 91.7 89 58.4
arahy.Tifrunner.gnm1.ann1.P7SNS1 Arachis hypogaea HOM05D003429 ORTHO05D003873 4.9e-17 91.7 89 58.4
Cpa.g.sc33.148 Carica papaya HOM05D003429 ORTHO05D003873 4.9e-17 91.7 89 58.4
GSVIVG01012453001 Vitis vinifera HOM05D003429 ORTHO05D003873 4.9e-17 91.7 89 60.7
Cfa010982 Carpinus fangiana HOM05D003429 ORTHO05D003873 8.4e-17 90.9 89 60.7
Dinv03754 Davidia involucrata HOM05D003429 ORTHO05D003873 8.4e-17 90.9 88 59.1
Dinv04984 Davidia involucrata HOM05D003429 ORTHO05D003873 8.4e-17 90.9 89 59.6
CiPaw.13G018300 Carya illinoinensis HOM05D003429 ORTHO05D003873 1.1e-16 90.5 89 59.6
QL04p022427 Quercus lobata HOM05D003429 ORTHO05D003873 1.1e-16 90.5 88 60.2
MSTRG.20488 Avicennia marina HOM05D003429 ORTHO05D003873 1.9e-16 89.7 89 59.6
Medtr1g051125 Medicago truncatula HOM05D003429 ORTHO05D003873 1.9e-16 89.7 95 49.5
Sc09g0004760 Simmondsia chinensis HOM05D003429 ORTHO05D003873 1.9e-16 89.7 89 61.8
Lj9A653G52 Lonicera japonica HOM05D003429 ORTHO05D003873 2.4e-16 89.4 89 56.2
SGA_v2.0_scaffold164G38141 Striga asiatica HOM05D003429 ORTHO05D003873 2.4e-16 89.4 97 54.6
TPR.G13799 Trifolium pratense HOM05D003429 ORTHO05D003873 3.2e-16 89.0 97 46.4
TWI53G2015 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 3.2e-16 89.0 88 54.5
Atru.chr12.1194 Acer truncatum HOM05D003429 ORTHO05D003873 4.2e-16 88.6 89 58.4
Ca_14865_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 4.2e-16 88.6 89 50.6
DCAR_013522 Daucus carota HOM05D003429 ORTHO05D003873 4.2e-16 88.6 85 55.3
QL07p014239 Quercus lobata HOM05D003429 ORTHO05D003873 4.2e-16 88.6 89 55.1
SalBow5G1634 Salvia bowleyana HOM05D003429 ORTHO05D003873 4.2e-16 88.6 89 55.1
PSO339G2530 Papaver somniferum HOM05D003429 ORTHO05D003873 5.4e-16 88.2 97 52.6
PSO384G1706 Papaver somniferum HOM05D003429 ORTHO05D003873 5.4e-16 88.2 97 52.6
Potri.001G036100 Populus trichocarpa HOM05D003429 ORTHO05D003873 5.4e-16 88.2 89 58.4
PGR031G2936 Punica granatum HOM05D003429 ORTHO05D003873 5.4e-16 88.2 89 58.4
Sabra01G0025100 Salix brachista HOM05D003429 ORTHO05D003873 5.4e-16 88.2 89 58.4
Potri.003G189500 Populus trichocarpa HOM05D003429 ORTHO05D003873 7.1e-16 87.8 89 58.4
unitig_22.g5335 Utricularia gibba HOM05D003429 ORTHO05D003873 7.1e-16 87.8 89 57.3
EL10Ac4g08832 Beta vulgaris HOM05D003429 ORTHO05D003873 9.3e-16 87.4 89 57.3
ECA248G1206 Erigeron canadensis HOM05D003429 ORTHO05D003873 9.3e-16 87.4 97 54.6
Glyma.04G003000 Glycine max HOM05D003429 ORTHO05D003873 9.3e-16 87.4 89 57.3
Lj1g0005148 Lotus japonicus HOM05D003429 ORTHO05D003873 9.3e-16 87.4 89 57.3
TPR.G38508 Trifolium pratense HOM05D003429 ORTHO05D003873 9.3e-16 87.4 89 56.2
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 1.2e-15 87.0 88 53.4
Eucgr.G03181 Eucalyptus grandis HOM05D003429 ORTHO05D003873 1.2e-15 87.0 89 58.4
Lalb_Chr11g0061181 Lupinus albus HOM05D003429 ORTHO05D003873 1.2e-15 87.0 89 57.3
MBI19_g25231_MAGBIO Magnolia biondii HOM05D003429 ORTHO05D003873 1.2e-15 87.0 89 52.8
Psat5g001960 Pisum sativum HOM05D003429 ORTHO05D003873 1.2e-15 87.0 89 56.2
MELO3C011384.2 Cucumis melo HOM05D003429 ORTHO05D003873 1.6e-15 86.7 89 57.3
CsaV3_6G035760 Cucumis sativus L. HOM05D003429 ORTHO05D003873 1.6e-15 86.7 89 57.3
VMungo0720G0379 Vigna mungo HOM05D003429 ORTHO05D003873 1.6e-15 86.7 90 52.2
Hund06843 Selenicereus undatus HOM05D003429 ORTHO05D003873 2.1e-15 86.3 89 57.3
CANSAT56G3732 Cannabis sativa HOM05D003429 ORTHO05D003873 2.7e-15 85.9 88 56.8
Medtr3g118040 Medicago truncatula HOM05D003429 ORTHO05D003873 2.7e-15 85.9 89 55.1
Cc00_g07020 Coffea canephora HOM05D003429 ORTHO05D003873 3.5e-15 85.5 89 53.9
Glyma.06G003000 Glycine max HOM05D003429 ORTHO05D003873 3.5e-15 85.5 89 56.2
RcHm_v2.0_Chr1g0329811 Rosa chinensis HOM05D003429 ORTHO05D003873 3.5e-15 85.5 89 56.2
THA.LOC104816588 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 3.5e-15 85.5 88 53.4
Os03g0616700 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 4.6e-15 85.1 89 52.8
Thecc.10G129100 Theobroma cacao HOM05D003429 ORTHO05D003873 4.6e-15 85.1 89 57.3
Gohir.A10G192300 Gossypium hirsutum HOM05D003429 ORTHO05D003873 6.0e-15 84.7 89 55.1
Oeu013041.2 Olea europaea HOM05D003429 ORTHO05D003873 6.0e-15 84.7 89 52.8
Sed0026988 Sechium edule HOM05D003429 ORTHO05D003873 6.0e-15 84.7 89 57.3
THA.LOC104826824 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 6.0e-15 84.7 88 52.3
Manes.04G153600 Manihot esculenta HOM05D003429 ORTHO05D003873 7.8e-15 84.3 89 55.1
Duzib128G2024 Durio zibethinus HOM05D003429 ORTHO05D003873 1.0e-14 84.0 89 56.2
Gohir.D10G200200 Gossypium hirsutum HOM05D003429 ORTHO05D003873 1.0e-14 84.0 89 55.1
Gorai.011G224400 Gossypium raimondii HOM05D003429 ORTHO05D003873 1.0e-14 84.0 89 55.1
AL6G16070 Arabidopsis lyrata HOM05D003429 ORTHO05D003873 1.3e-14 83.6 88 55.7
Lsat_1_v5_gn_1_118001 Lactuca sativa HOM05D003429 ORTHO05D003873 1.3e-14 83.6 89 55.1
Phvul.007G243600 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 1.3e-14 83.6 90 46.7
VMungo1309G0597 Vigna mungo HOM05D003429 ORTHO05D003873 1.3e-14 83.6 89 55.1
BcaB05g21683 Brassica carinata HOM05D003429 ORTHO05D003873 1.7e-14 83.2 89 51.7
C02p02580 Brassica napus HOM05D003429 ORTHO05D003873 1.7e-14 83.2 89 51.7
BolC2t06224H Brassica oleracea HOM05D003429 ORTHO05D003873 1.7e-14 83.2 89 51.7
Carub.0006s0499 Capsella rubella HOM05D003429 ORTHO05D003873 1.7e-14 83.2 88 54.5
Manes.11G010000 Manihot esculenta HOM05D003429 ORTHO05D003873 1.7e-14 83.2 89 53.9
Phvul.009G118700 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 1.7e-14 83.2 89 53.9
Aqoxy1G01517 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 2.3e-14 82.8 89 53.9
Aqoxy5G00851 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 2.3e-14 82.8 89 53.9
BraA02t04869Z Brassica rapa HOM05D003429 ORTHO05D003873 2.3e-14 82.8 89 51.7
Ciclev10000149m.g Citrus clementina HOM05D003429 ORTHO05D003873 2.3e-14 82.8 89 55.1
Lalb_Chr02g0156721 Lupinus albus HOM05D003429 ORTHO05D003873 2.3e-14 82.8 89 50.6
MD07G1118000 Malus domestica HOM05D003429 ORTHO05D003873 2.3e-14 82.8 89 55.1
AUR62035521 Chenopodium quinoa HOM05D003429 ORTHO05D003873 3.0e-14 82.4 89 55.1
FAN01G2134 Fragaria x ananassa HOM05D003429 ORTHO05D003873 3.0e-14 82.4 89 55.1
AT5G06120 Arabidopsis thaliana HOM05D003429 ORTHO05D003873 3.9e-14 82.0 88 54.5
FvH4_7g04530 Fragaria vesca HOM05D003429 ORTHO05D003873 3.9e-14 82.0 89 55.1
FAN03G0932 Fragaria x ananassa HOM05D003429 ORTHO05D003873 3.9e-14 82.0 89 55.1
FAN06G0150 Fragaria x ananassa HOM05D003429 ORTHO05D003873 3.9e-14 82.0 89 55.1
FAN06G3547 Fragaria x ananassa HOM05D003429 ORTHO05D003873 3.9e-14 82.0 89 55.1
FAN10G0722 Fragaria x ananassa HOM05D003429 ORTHO05D003873 3.9e-14 82.0 89 55.1
ATR0782G154 Amborella trichopoda HOM05D003429 ORTHO05D003873 5.1e-14 81.6 89 49.4
Duzib114G0344 Durio zibethinus HOM05D003429 ORTHO05D003873 5.1e-14 81.6 88 55.7
HanXRQChr16g0510451 Helianthus annuus HOM05D003429 ORTHO05D003873 5.1e-14 81.6 89 53.9
Thhalv10012516m.g Eutrema salsugineum HOM05D003429 ORTHO05D003873 6.6e-14 81.3 88 54.5
Sc13g0000830 Simmondsia chinensis HOM05D003429 ORTHO05D003873 6.6e-14 81.3 87 50.6
TWI63G1019 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 8.7e-14 80.9 89 55.1
AUR62041296 Chenopodium quinoa HOM05D003429 ORTHO05D003873 1.1e-13 80.5 86 54.7
Glyma.10G104900 Glycine max HOM05D003429 ORTHO05D003873 1.1e-13 80.5 89 48.3
Sp6g36790 Schrenkiella parvula HOM05D003429 ORTHO05D003873 1.1e-13 80.5 88 52.3
A10p30310 Brassica napus HOM05D003429 ORTHO05D003873 3.3e-13 79.0 88 53.4
BraA10t45069Z Brassica rapa HOM05D003429 ORTHO05D003873 3.3e-13 79.0 88 53.4
BcaC06g32321 Brassica carinata HOM05D003429 ORTHO05D003873 4.3e-13 78.6 88 52.3
C09p70720 Brassica napus HOM05D003429 ORTHO05D003873 4.3e-13 78.6 88 52.3
BolC9t59828H Brassica oleracea HOM05D003429 ORTHO05D003873 4.3e-13 78.6 88 52.3
Haze_02954 Corylus avellana HOM05D003429 ORTHO05D003873 4.3e-13 78.6 124 46.8
HPP92_028707 Vanilla planifolia HOM05D003429 ORTHO05D003873 4.3e-13 78.6 89 49.4
Zm00001eb278500 Zea mays HOM05D003429 ORTHO05D003873 5.6e-13 78.2 89 48.3
SMO367G0627 Selaginella moellendorffii HOM05D003429 ORTHO05D003873 9.6e-13 77.4 88 46.6
Hund24514 Selenicereus undatus HOM05D003429 ORTHO05D003873 9.6e-13 77.4 87 49.4
CBR_g30950 Chara braunii HOM05D003429 ORTHO05D003873 4.8e-12 75.1 88 43.2
AUR62018433 Chenopodium quinoa HOM05D003429 ORTHO05D003873 2.4e-11 72.8 83 47.0
Aa31LG11G7100 Aethionema arabicum HOM05D003429 ORTHO05D003873 4.0e-11 72.0 75 56.0
Pp3c5_25430 Physcomitrium patens HOM05D003429 ORTHO05D003873 5.3e-11 71.6 88 43.2
SHI11319 Sapria himalayana HOM05D003429 ORTHO05D003873 9.0e-11 70.9 76 53.9
AUR62021000 Chenopodium quinoa HOM05D003429 ORTHO05D003873 2.0e-10 69.7 83 45.8
DCAR_022673 Daucus carota HOM05D003429 ORTHO05D003873 2.0e-10 69.7 83 55.4
Pp3c5_25610 Physcomitrium patens HOM05D003429 ORTHO05D003873 3.4e-10 68.9 88 42.0
EL10Ac3g07341 Beta vulgaris HOM05D003429 ORTHO05D003873 4.9e-09 65.1 84 40.5
Mapoly0017s0001 Marchantia polymorpha HOM05D003429 ORTHO05D003873 8.4e-09 64.3 88 37.5
Psat6g086560 Pisum sativum HOM05D003429 ORTHO05D003873 4.6e-07 58.5 58 48.3
PRCOL_00000821 Prasinoderma coloniale HOM05D003429 ORTHO05D003873 6.6e-06 54.7 96 31.2
MapolyY_B0019 Marchantia polymorpha HOM05D003429 ORTHO05D003873 8.7e-06 54.3 86 34.9


User provided reference genes

Program Settings