Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.6e-129 464.9 237 100.0
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 1.8e-83 313.2 242 69.8
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 1.8e-80 303.1 236 69.5
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 4.2e-77 292.0 243 65.4
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 7.4e-74 281.2 242 64.0
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 7.0e-72 274.6 237 63.3
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 9.1e-72 274.2 245 66.5
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 2.0e-71 273.1 243 61.3
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 2.9e-70 269.2 237 67.9
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 6.5e-70 268.1 243 63.8
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 6.5e-70 268.1 246 63.8
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 8.5e-70 267.7 269 57.6
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 1.9e-69 266.5 242 60.3
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 2.5e-69 266.2 232 66.8
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 3.2e-69 265.8 244 59.8
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 9.4e-69 264.2 243 61.7
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 9.4e-69 264.2 243 59.3
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.8e-67 260.0 241 60.6
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 5.2e-67 258.5 243 58.0
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 5.2e-67 258.5 226 64.6
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 8.8e-67 257.7 287 53.3
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 8.8e-67 257.7 242 60.7
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 5.7e-66 255.0 243 58.0
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 9.7e-66 254.2 239 59.4
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 1.3e-65 253.8 239 58.6
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 2.2e-65 253.1 237 59.5
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 4.8e-65 251.9 243 57.2
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 8.3e-65 251.1 243 57.2
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.1e-64 250.8 239 58.2
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.1e-64 250.8 241 58.9
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 2.4e-64 249.6 239 60.7
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 4.1e-64 248.8 239 57.7
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 9.1e-64 247.7 229 60.7
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 1.6e-63 246.9 240 57.9
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 2.7e-63 246.1 244 59.0
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 3.8e-62 242.3 232 60.8
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 1.1e-61 240.7 244 58.2
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.5e-61 240.4 233 56.2
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 1.5e-61 240.4 248 56.5
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 2.5e-61 239.6 242 56.6
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 2.5e-61 239.6 220 60.0
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 4.2e-61 238.8 202 59.9
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 5.5e-61 238.4 234 53.8
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 9.4e-61 237.7 220 60.0
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 2.7e-60 236.1 174 73.6
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 3.6e-60 235.7 233 54.5
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 1.4e-59 233.8 238 55.9
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 2.3e-59 233.0 240 54.2
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 4.0e-59 232.3 259 54.1
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 4.0e-59 232.3 220 59.1
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 1.2e-58 230.7 280 51.8
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 1.5e-58 230.3 238 56.3
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 2.6e-58 229.6 202 58.9
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 4.4e-58 228.8 241 53.9
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 5.7e-58 228.4 172 70.3
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 5.7e-58 228.4 232 56.0
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 5.7e-58 228.4 232 56.0
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 5.7e-58 228.4 242 56.2
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 7.5e-58 228.0 238 55.5
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.3e-57 227.3 244 57.4
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 8.3e-57 224.6 227 55.1
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.1e-56 224.2 239 52.7
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 1.1e-56 224.2 239 54.0
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.4e-56 223.8 233 54.9
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 2.4e-56 223.0 251 52.2
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.1e-56 222.6 209 58.9
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.1e-56 222.6 209 58.9
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 3.1e-56 222.6 183 62.8
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 7.0e-56 221.5 244 55.7
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 9.1e-56 221.1 234 54.7
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.5e-55 219.2 240 52.5
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 1.0e-54 217.6 248 56.5
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 3.8e-54 215.7 239 51.9
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 6.6e-54 214.9 234 50.4
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 1.1e-53 214.2 238 52.9
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 3.3e-53 212.6 240 51.2
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 4.2e-53 212.2 259 49.0
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 3.6e-52 209.1 214 53.7
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 3.6e-52 209.1 202 55.9
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 1.8e-51 206.8 214 52.8
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 2.3e-51 206.5 238 52.5
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 3.0e-51 206.1 238 51.7
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 4.0e-51 205.7 241 50.2
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.9e-51 204.5 231 50.6
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 5.7e-50 201.8 214 52.8
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 2.8e-49 199.5 255 51.4
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 6.3e-49 198.4 100 100.0
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 1.1e-48 197.6 239 50.6
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 9.2e-48 194.5 232 50.0
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-47 193.7 232 48.3
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 2.0e-47 193.4 239 48.1
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 2.7e-47 193.0 241 51.5
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.5e-47 192.6 232 49.1
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 5.9e-47 191.8 242 50.0
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 1.0e-46 191.0 242 50.4
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 2.3e-46 189.9 238 47.9
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.1e-45 187.6 233 48.9
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 7.3e-45 184.9 234 47.4
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 9.5e-45 184.5 201 50.7
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 2.1e-44 183.3 237 51.1
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 6.1e-44 181.8 238 47.1
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 6.8e-43 178.3 235 47.2
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 2.6e-42 176.4 232 46.6
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 9.8e-42 174.5 235 46.8
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 2.4e-40 169.9 122 74.6
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 5.4e-40 168.7 236 44.1
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 7.8e-39 164.9 235 45.5
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 1.0e-38 164.5 183 55.2
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.3e-38 164.1 236 42.8
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 1.7e-38 163.7 210 45.7
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 2.3e-38 163.3 241 45.2
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 8.6e-38 161.4 216 45.8
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 7.3e-37 158.3 237 43.9
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-36 157.1 173 50.9
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 3.6e-36 156.0 166 53.6
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 1.8e-35 153.7 167 50.3
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 8.9e-35 151.4 239 43.1
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 8.9e-35 151.4 238 45.8
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.5e-34 150.6 245 40.8
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 7.5e-34 148.3 249 41.8
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-33 147.5 230 41.7
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 1.3e-33 147.5 192 44.8
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 1.7e-33 147.1 225 42.7
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.7e-33 147.1 237 43.5
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 3.7e-33 146.0 242 43.8
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 6.4e-33 145.2 238 39.5
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 5.4e-32 142.1 227 41.9
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 5.4e-32 142.1 221 40.7
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 6.0e-31 138.7 238 40.3
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 8.1e-28 128.3 110 61.8
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 8.9e-27 124.8 209 37.8
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 2.6e-26 123.2 240 39.2
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 5.8e-26 122.1 232 37.9
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 1.7e-25 120.6 226 37.6
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 6.4e-25 118.6 172 44.8
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-24 117.5 190 41.6
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.5e-23 112.8 147 44.9
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 2.3e-22 110.2 159 44.0
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 3.6e-20 102.8 192 38.5
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 1.4e-19 100.9 152 38.8
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 3.4e-18 96.3 152 36.8
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.7e-17 94.0 49 91.8
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 4.9e-17 92.4 159 38.4
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 6.4e-17 92.0 43 100.0
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.0e-15 85.5 119 38.7
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.0e-15 85.5 90 45.6
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.9e-14 82.8 116 41.4
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-13 81.3 90 44.4
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 1.5e-13 80.9 73 53.4
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 4.3e-13 79.3 154 35.7
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 9.6e-13 78.2 116 39.7
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 1.3e-12 77.8 70 60.0
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-08 64.7 93 41.9
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-08 64.7 93 41.9
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 1.9e-08 63.9 87 46.0
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.0e-07 58.9 99 42.4
Mapoly0076s0033 Marchantia polymorpha HOM05D019097 ORTHO05D019635 1.7e-06 57.4 212 28.8


User provided reference genes

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