Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025775 Camellia sinensis var. sinensis HOM05D005988 ORTHO05D007392 1.1e-53 213.0 100 100.0
Rhsim04G0162300 Rhododendron simsii HOM05D005988 ORTHO05D007392 1.1e-47 193.0 98 91.8
vmacro01331 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 1.1e-45 186.4 95 89.5
vmacro05591 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 8.9e-45 183.3 92 90.2
vmacro23425 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 8.9e-45 183.3 92 90.2
Rhsim12G0099600 Rhododendron simsii HOM05D005988 ORTHO05D007392 5.8e-44 180.6 95 87.4
Gohir.A03G126200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 2.9e-43 178.3 91 86.8
Gohir.D02G149200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 6.4e-43 177.2 100 82.0
Gorai.005G167100 Gossypium raimondii HOM05D005988 ORTHO05D007392 6.4e-43 177.2 100 82.0
Manes.13G012300 Manihot esculenta HOM05D005988 ORTHO05D007392 7.1e-42 173.7 88 86.4
PGR102G1123 Punica granatum HOM05D005988 ORTHO05D007392 9.2e-42 173.3 87 85.1
THA.LOC109117182 Tarenaya hassleriana HOM05D005988 ORTHO05D007392 2.7e-41 171.8 98 79.6
Nitab4.5_0006506g0010 Nicotiana tabacum HOM05D005988 ORTHO05D007392 6.0e-41 170.6 92 84.8
COL.COLO4_20400 Corchorus olitorius HOM05D005988 ORTHO05D007392 7.8e-41 170.2 92 81.5
Manes.12G011400 Manihot esculenta HOM05D005988 ORTHO05D007392 7.8e-41 170.2 88 84.1
Cc11_g16890 Coffea canephora HOM05D005988 ORTHO05D007392 1.0e-40 169.9 94 78.7
Nitab4.5_0005361g0020 Nicotiana tabacum HOM05D005988 ORTHO05D007392 1.3e-40 169.5 92 83.7
Potri.001G055400 Populus trichocarpa HOM05D005988 ORTHO05D007392 1.7e-40 169.1 88 84.1
DCAR_031202 Daucus carota HOM05D005988 ORTHO05D007392 3.9e-40 167.9 91 79.1
Potri.003G173000 Populus trichocarpa HOM05D005988 ORTHO05D007392 3.9e-40 167.9 88 84.1
Thecc.02G210500 Theobroma cacao HOM05D005988 ORTHO05D007392 3.9e-40 167.9 91 80.2
CiPaw.05G109900 Carya illinoinensis HOM05D005988 ORTHO05D007392 5.1e-40 167.5 87 83.9
Hma1.2p1_0065F.1_g035500 Hydrangea macrophylla HOM05D005988 ORTHO05D007392 5.1e-40 167.5 96 80.2
Sabra01G0040000 Salix brachista HOM05D005988 ORTHO05D007392 5.1e-40 167.5 88 83.0
Sabra03G0126500 Salix brachista HOM05D005988 ORTHO05D007392 5.1e-40 167.5 88 83.0
Cfa009369 Carpinus fangiana HOM05D005988 ORTHO05D007392 8.6e-40 166.8 87 83.9
ClCG11G013680 Citrullus lanatus HOM05D005988 ORTHO05D007392 8.6e-40 166.8 90 82.2
Haze_12418 Corylus avellana HOM05D005988 ORTHO05D007392 8.6e-40 166.8 87 83.9
Nn4g22324 Nelumbo nucifera HOM05D005988 ORTHO05D007392 8.6e-40 166.8 91 79.1
Cpa.g.sc43.58 Carica papaya HOM05D005988 ORTHO05D007392 1.5e-39 166.0 91 81.3
MELO3C011867.2 Cucumis melo HOM05D005988 ORTHO05D007392 1.9e-39 165.6 85 84.7
Duzib251G0426 Durio zibethinus HOM05D005988 ORTHO05D007392 1.9e-39 165.6 100 78.0
CANSAT01G3258 Cannabis sativa HOM05D005988 ORTHO05D007392 3.3e-39 164.9 93 78.5
Duzib251G0424 Durio zibethinus HOM05D005988 ORTHO05D007392 3.3e-39 164.9 99 76.8
CAN.G875.9 Capsicum annuum HOM05D005988 ORTHO05D007392 7.3e-39 163.7 93 81.7
MBI01_g01248_MAGBIO Magnolia biondii HOM05D005988 ORTHO05D007392 7.3e-39 163.7 85 84.7
CsaV3_5G030290 Cucumis sativus L. HOM05D005988 ORTHO05D007392 9.5e-39 163.3 85 82.4
ECA233G0411 Erigeron canadensis HOM05D005988 ORTHO05D007392 1.2e-38 162.9 94 77.7
Atru.chr11.2323 Acer truncatum HOM05D005988 ORTHO05D007392 2.1e-38 162.2 95 74.7
Aa31sc377G10 Aethionema arabicum HOM05D005988 ORTHO05D007392 2.1e-38 162.2 96 75.0
Eucgr.B03491 Eucalyptus grandis HOM05D005988 ORTHO05D007392 2.1e-38 162.2 87 82.8
CARHR059890 Cardamine hirsuta HOM05D005988 ORTHO05D007392 2.8e-38 161.8 96 76.0
PSO017G5437 Papaver somniferum HOM05D005988 ORTHO05D007392 2.8e-38 161.8 85 80.0
Prupe.1G225900 Prunus persica HOM05D005988 ORTHO05D007392 3.6e-38 161.4 92 79.3
RcHm_v2.0_Chr4g0430261 Rosa chinensis HOM05D005988 ORTHO05D007392 3.6e-38 161.4 84 83.3
AT1G67350 Arabidopsis thaliana HOM05D005988 ORTHO05D007392 6.2e-38 160.6 96 75.0
PGSC0003DMG400017679 Solanum tuberosum HOM05D005988 ORTHO05D007392 6.2e-38 160.6 84 85.7
BcaB03g15204 Brassica carinata HOM05D005988 ORTHO05D007392 8.1e-38 160.2 95 74.7
CDE06G1110 Ceratophyllum demersum HOM05D005988 ORTHO05D007392 1.4e-37 159.5 86 79.1
Carub.0002s1364 Capsella rubella HOM05D005988 ORTHO05D007392 1.8e-37 159.1 96 75.0
Sed0026530 Sechium edule HOM05D005988 ORTHO05D007392 1.8e-37 159.1 85 82.4
Actinidia08072 Actinidia chinensis HOM05D005988 ORTHO05D007392 2.4e-37 158.7 86 81.4
AL2G25900 Arabidopsis lyrata HOM05D005988 ORTHO05D007392 2.4e-37 158.7 95 74.7
Solyc04g045620.3 Solanum lycopersicum HOM05D005988 ORTHO05D007392 3.1e-37 158.3 83 84.3
Sopen04g017580 Solanum pennellii HOM05D005988 ORTHO05D007392 3.1e-37 158.3 83 84.3
FvH4_4g23770 Fragaria vesca HOM05D005988 ORTHO05D007392 5.2e-37 157.5 83 81.9
FAN07G1208 Fragaria x ananassa HOM05D005988 ORTHO05D007392 5.2e-37 157.5 83 81.9
FAN12G0190 Fragaria x ananassa HOM05D005988 ORTHO05D007392 5.2e-37 157.5 83 81.9
FAN17G2984 Fragaria x ananassa HOM05D005988 ORTHO05D007392 5.2e-37 157.5 83 81.9
HanXRQChr12g0372221 Helianthus annuus HOM05D005988 ORTHO05D007392 5.2e-37 157.5 90 78.9
Hund13388 Selenicereus undatus HOM05D005988 ORTHO05D007392 5.2e-37 157.5 86 79.1
ATR0582G290 Amborella trichopoda HOM05D005988 ORTHO05D007392 6.8e-37 157.1 86 81.4
C06p42910 Brassica napus HOM05D005988 ORTHO05D007392 6.8e-37 157.1 94 74.5
GSVIVG01010482001 Vitis vinifera HOM05D005988 ORTHO05D007392 6.8e-37 157.1 87 77.0
Glyma.05G147302 Glycine max HOM05D005988 ORTHO05D007392 8.9e-37 156.8 84 79.8
Lalb_Chr07g0187141 Lupinus albus HOM05D005988 ORTHO05D007392 1.2e-36 156.4 85 75.3
Ca_18034_v3 Cicer arietinum L. HOM05D005988 ORTHO05D007392 1.5e-36 156.0 84 79.8
Glyma.08G104300 Glycine max HOM05D005988 ORTHO05D007392 1.5e-36 156.0 84 78.6
Phvul.L002046 Phaseolus vulgaris HOM05D005988 ORTHO05D007392 1.5e-36 156.0 84 79.8
Aqoxy3G00796 Aquilegia oxysepala HOM05D005988 ORTHO05D007392 2.0e-36 155.6 85 77.6
BcaB05g24271 Brassica carinata HOM05D005988 ORTHO05D007392 2.0e-36 155.6 93 74.2
BcaB05g24277 Brassica carinata HOM05D005988 ORTHO05D007392 2.0e-36 155.6 93 74.2
BcaC08g46168 Brassica carinata HOM05D005988 ORTHO05D007392 2.0e-36 155.6 93 74.2
Sc15g0005560 Simmondsia chinensis HOM05D005988 ORTHO05D007392 3.4e-36 154.8 86 77.9
Sc15g0005760 Simmondsia chinensis HOM05D005988 ORTHO05D007392 3.4e-36 154.8 86 77.9
A07p33950 Brassica napus HOM05D005988 ORTHO05D007392 4.4e-36 154.5 93 73.1
Nitab4.5_0000060g0090 Nicotiana tabacum HOM05D005988 ORTHO05D007392 4.4e-36 154.5 81 85.2
TPR.G34164 Trifolium pratense HOM05D005988 ORTHO05D007392 4.4e-36 154.5 84 78.6
EL10Ac2g02768 Beta vulgaris HOM05D005988 ORTHO05D007392 7.6e-36 153.7 85 76.5
AUR62034347 Chenopodium quinoa HOM05D005988 ORTHO05D007392 7.6e-36 153.7 84 77.4
Psat0s2314g0040 Pisum sativum HOM05D005988 ORTHO05D007392 7.6e-36 153.7 84 77.4
Thhalv10019308m.g Eutrema salsugineum HOM05D005988 ORTHO05D007392 9.9e-36 153.3 97 73.2
BcaC03g14837 Brassica carinata HOM05D005988 ORTHO05D007392 1.3e-35 152.9 85 77.6
A02p14180 Brassica napus HOM05D005988 ORTHO05D007392 1.3e-35 152.9 85 77.6
C02p22980 Brassica napus HOM05D005988 ORTHO05D007392 1.3e-35 152.9 85 77.6
BraA02t06481Z Brassica rapa HOM05D005988 ORTHO05D007392 1.3e-35 152.9 85 77.6
Lalb_Chr13g0294321 Lupinus albus HOM05D005988 ORTHO05D007392 1.3e-35 152.9 86 72.1
Sp5g22300 Schrenkiella parvula HOM05D005988 ORTHO05D007392 1.3e-35 152.9 96 74.0
AUR62022358 Chenopodium quinoa HOM05D005988 ORTHO05D007392 3.8e-35 151.4 83 77.1
Peaxi162Scf00038g00014 Petunia axillaris HOM05D005988 ORTHO05D007392 3.8e-35 151.4 91 75.8
arahy.Tifrunner.gnm1.ann1.NCU5C9 Arachis hypogaea HOM05D005988 ORTHO05D007392 4.9e-35 151.0 88 72.7
arahy.Tifrunner.gnm1.ann1.XY4E2W Arachis hypogaea HOM05D005988 ORTHO05D007392 6.4e-35 150.6 84 75.0
MD16G1119100 Malus domestica HOM05D005988 ORTHO05D007392 6.4e-35 150.6 80 81.2
arahy.Tifrunner.gnm1.ann1.5IUK3V Arachis hypogaea HOM05D005988 ORTHO05D007392 8.4e-35 150.2 84 75.0
arahy.Tifrunner.gnm1.ann1.CH2TLP Arachis hypogaea HOM05D005988 ORTHO05D007392 8.4e-35 150.2 84 75.0
TPR.G17077 Trifolium pratense HOM05D005988 ORTHO05D007392 8.4e-35 150.2 84 76.2
FAN22G1192 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.1e-34 149.8 79 82.3
Lj4g0004056 Lotus japonicus HOM05D005988 ORTHO05D007392 1.9e-34 149.1 84 75.0
Ah.10g030080 Amaranthus hybridus HOM05D005988 ORTHO05D007392 4.2e-34 147.9 81 77.8
Medtr8g080630 Medicago truncatula HOM05D005988 ORTHO05D007392 9.2e-34 146.7 92 70.7
QL03p052764 Quercus lobata HOM05D005988 ORTHO05D007392 1.2e-33 146.4 90 74.4
Os03g0685900 Oryza sativa ssp. japonica HOM05D005988 ORTHO05D007392 4.6e-33 144.4 94 71.3
Zm00001eb290200 Zea mays HOM05D005988 ORTHO05D007392 2.3e-32 142.1 94 71.3
HPP92_012485 Vanilla planifolia HOM05D005988 ORTHO05D007392 3.9e-32 141.4 83 77.1
SalBow8G0976 Salvia bowleyana HOM05D005988 ORTHO05D007392 8.7e-32 140.2 85 71.8
Zm00001eb422590 Zea mays HOM05D005988 ORTHO05D007392 1.9e-31 139.0 93 69.9
Migut.E00018 Erythranthe guttata HOM05D005988 ORTHO05D007392 5.6e-31 137.5 92 68.5
TWI75G1041 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 7.3e-31 137.1 87 72.4
DCAR_024095 Daucus carota HOM05D005988 ORTHO05D007392 9.6e-31 136.7 80 72.5
unitig_62.g23652 Utricularia gibba HOM05D005988 ORTHO05D007392 1.6e-30 136.0 94 66.0
SGA_v2.0_scaffold144G35838 Striga asiatica HOM05D005988 ORTHO05D007392 2.1e-30 135.6 86 69.8
MD13G1118900 Malus domestica HOM05D005988 ORTHO05D007392 8.1e-30 133.7 82 72.0
TWI18G1296 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 1.2e-28 129.8 87 66.7
Lsat_1_v5_gn_7_95720 Lactuca sativa HOM05D005988 ORTHO05D007392 4.4e-28 127.9 72 72.2
Lalb_Chr23g0278031 Lupinus albus HOM05D005988 ORTHO05D007392 2.7e-25 118.6 84 61.9
Lalb_Chr23g0278041 Lupinus albus HOM05D005988 ORTHO05D007392 4.6e-25 117.9 84 61.9
Migut.G00897 Erythranthe guttata HOM05D005988 ORTHO05D007392 9.6e-23 110.2 70 70.0
Migut.O00848 Erythranthe guttata HOM05D005988 ORTHO05D007392 9.6e-23 110.2 70 70.0
CBR_g8533 Chara braunii HOM05D005988 ORTHO05D007392 1.1e-21 106.7 84 53.6
Nitab4.5_0001404g0080 Nicotiana tabacum HOM05D005988 ORTHO05D007392 2.4e-21 105.5 63 74.6
Pp3c3_5450 Physcomitrium patens HOM05D005988 ORTHO05D007392 2.6e-20 102.1 82 52.4
Mapoly0011s0010 Marchantia polymorpha HOM05D005988 ORTHO05D007392 6.4e-19 97.4 78 53.8
AagrBONN_evm.TU.Sc2ySwM_117.535 Anthoceros agrestis HOM05D005988 ORTHO05D007392 1.5e-15 86.3 78 48.7
SMO356G0160 Selaginella moellendorffii HOM05D005988 ORTHO05D007392 9.6e-15 83.6 85 42.4
TAR629G1917 Trochodendron aralioides HOM05D000133 ORTHO05D002928 2.8e-14 82.0 42 76.2
Actinidia30649 Actinidia chinensis HOM05D005988 ORTHO05D007392 1.9e-10 69.3 41 78.0
BcaB05g24274 Brassica carinata HOM05D005988 ORTHO05D007392 5.5e-10 67.8 86 47.7
Zm00001eb053260 Zea mays HOM05D005988 ORTHO05D007392 5.7e-07 57.8 36 72.2
Zm00001eb053240 Zea mays HOM05D005988 ORTHO05D007392 9.6e-07 57.0 36 69.4
arahy.Tifrunner.gnm1.ann1.BFR0IC Arachis hypogaea HOM05D005988 ORTHO05D007392 1.3e-06 56.6 56 46.4


User provided reference genes

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