Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 2.1e-247 858.6 438 100.0
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 4.7e-223 777.7 443 88.7
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.4e-214 749.6 437 87.0
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.8e-214 749.2 436 87.2
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.2e-213 746.5 433 87.1
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 2.7e-210 735.3 442 84.2
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 2.9e-209 731.9 438 84.9
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 5.2e-206 721.1 438 84.2
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 3.4e-205 718.4 437 82.6
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 4.4e-205 718.0 433 84.8
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.3e-204 716.5 443 82.4
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 1.3e-204 716.5 556 70.0
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 6.4e-204 714.1 433 83.4
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 6.4e-204 714.1 442 81.7
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 8.3e-204 713.8 516 73.8
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 1.4e-203 713.0 430 84.0
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 1.9e-203 712.6 435 82.1
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 2.4e-203 712.2 430 83.0
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 5.4e-203 711.1 443 81.5
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 9.2e-203 710.3 442 81.2
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 1.2e-202 709.9 438 82.2
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 1.6e-202 709.5 438 82.0
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 2.7e-202 708.8 437 81.9
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 6.0e-202 707.6 431 84.0
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 7.8e-202 707.2 427 83.8
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 1.0e-201 706.8 426 82.6
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 2.3e-201 705.7 426 83.1
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 3.9e-201 704.9 444 80.6
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 5.0e-201 704.5 436 81.9
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 5.0e-201 704.5 433 80.8
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 8.6e-201 703.7 438 82.0
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 3.3e-200 701.8 430 82.1
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 4.3e-200 701.4 436 81.7
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 5.6e-200 701.0 430 82.1
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.2e-199 699.9 431 82.4
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.2e-199 699.9 437 81.5
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 4.7e-199 698.0 443 81.0
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 1.1e-198 696.8 432 82.6
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.8e-198 696.0 437 80.3
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 1.8e-198 696.0 432 82.9
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 3.1e-198 695.3 431 81.9
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 5.2e-198 694.5 435 80.7
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 8.9e-198 693.7 435 79.8
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 1.2e-197 693.3 453 78.4
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 2.0e-197 692.6 433 79.0
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 2.0e-197 692.6 433 81.3
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 2.6e-197 692.2 470 76.4
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 3.4e-197 691.8 433 80.1
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 9.8e-197 690.3 426 81.5
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 9.8e-197 690.3 426 81.5
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 9.8e-197 690.3 426 81.5
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 1.3e-196 689.9 438 81.1
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.7e-196 689.5 435 81.1
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.7e-196 689.5 433 80.1
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 1.7e-196 689.5 425 82.1
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 2.2e-196 689.1 434 81.1
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 2.2e-196 689.1 439 80.4
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 3.7e-196 688.3 442 79.6
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 4.9e-196 688.0 433 80.1
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 1.1e-195 686.8 426 81.5
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 1.1e-195 686.8 426 81.5
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.1e-195 686.8 433 79.9
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 1.4e-195 686.4 425 81.2
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 1.4e-195 686.4 425 81.2
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.4e-195 686.4 425 82.4
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 1.4e-195 686.4 425 80.7
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.9e-195 686.0 427 80.6
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.9e-195 686.0 435 78.9
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.9e-195 686.0 435 79.1
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.9e-195 686.0 435 79.1
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 2.4e-195 685.6 425 81.2
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 2.4e-195 685.6 425 81.2
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 2.4e-195 685.6 448 78.1
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 2.4e-195 685.6 434 80.2
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 2.4e-195 685.6 434 80.2
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 3.2e-195 685.3 425 80.9
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 3.2e-195 685.3 435 79.5
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 4.1e-195 684.9 426 81.2
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 4.1e-195 684.9 425 80.9
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 4.1e-195 684.9 425 82.1
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 7.0e-195 684.1 438 79.5
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 9.2e-195 683.7 426 80.5
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 9.2e-195 683.7 429 81.4
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 9.2e-195 683.7 429 81.4
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 2.1e-194 682.6 432 79.6
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 2.7e-194 682.2 426 81.7
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 6.0e-194 681.0 427 80.8
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 6.0e-194 681.0 425 80.2
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 6.0e-194 681.0 425 80.7
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 7.8e-194 680.6 433 81.5
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 7.8e-194 680.6 425 81.6
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 3.0e-193 678.7 430 80.0
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 3.9e-193 678.3 436 78.2
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 6.6e-193 677.6 429 80.2
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 6.6e-193 677.6 427 81.5
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 8.6e-193 677.2 425 81.4
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 8.6e-193 677.2 425 80.9
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 4.3e-192 674.9 436 78.7
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 1.2e-191 673.3 435 77.2
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 2.1e-191 672.5 435 78.6
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.1e-191 672.5 400 83.0
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 2.1e-191 672.5 432 79.6
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 4.7e-191 671.4 429 80.9
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 8.9e-190 667.2 425 79.3
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 2.0e-189 666.0 434 78.3
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 2.0e-189 666.0 486 72.6
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 4.4e-189 664.8 432 77.8
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 1.4e-187 659.8 429 77.4
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 1.9e-187 659.4 435 77.7
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 9.2e-187 657.1 429 77.4
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 2.7e-186 655.6 429 76.9
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.7e-186 655.6 435 76.1
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.6e-186 654.8 464 74.8
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 1.3e-185 653.3 435 75.6
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 5.1e-185 651.4 425 76.9
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 6.6e-185 651.0 441 75.1
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.5e-184 649.8 435 75.2
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 7.3e-184 647.5 425 79.3
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 6.2e-183 644.4 434 77.4
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 2.9e-180 635.6 423 76.8
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 6.4e-180 634.4 425 75.3
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 1.6e-178 629.8 431 75.4
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 4.6e-178 628.2 429 75.5
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 7.8e-178 627.5 395 78.5
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 7.3e-176 620.9 439 72.0
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 6.2e-175 617.8 428 74.1
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 1.1e-174 617.1 401 75.8
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 9.0e-174 614.0 395 75.7
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 1.3e-172 610.1 397 78.1
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.4e-171 606.7 439 72.2
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 2.4e-171 605.9 380 79.5
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 9.3e-171 604.0 418 73.2
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 2.6e-165 585.9 342 83.6
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 1.4e-163 580.1 349 86.2
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 4.2e-163 578.6 350 84.3
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 2.7e-162 575.9 362 80.1
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 9.6e-160 567.4 344 83.7
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 6.2e-159 564.7 340 83.2
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 3.4e-157 558.9 362 77.6
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 1.8e-150 536.6 346 74.3
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 2.4e-150 536.2 435 66.7
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 2.9e-148 529.3 434 65.9
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 9.3e-147 524.2 321 79.8
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 4.1e-142 508.8 404 64.6
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 1.5e-141 506.9 376 67.3
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 2.0e-141 506.5 348 73.6
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 1.6e-138 496.9 365 70.1
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 6.3e-127 458.4 261 84.7
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 3.5e-125 452.6 331 68.0
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 2.2e-119 433.3 270 78.5
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 2.4e-118 429.9 267 81.6
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 1.9e-115 420.2 384 59.4
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 9.8e-104 381.3 234 83.3
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 3.7e-95 352.8 233 76.8
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.1e-90 337.0 240 70.8
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 2.8e-90 336.7 188 89.9
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.6e-83 312.4 191 81.7
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 8.1e-82 308.5 355 50.7
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 2.4e-78 297.0 365 44.9
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 4.6e-69 266.2 155 78.7
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 4.3e-67 259.6 197 65.5
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 4.3e-67 259.6 197 65.5
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 1.7e-60 237.7 146 80.8
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 4.8e-58 229.6 220 60.9
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 7.6e-56 222.2 244 54.9
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 1.3e-39 168.3 154 59.1
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 2.9e-39 167.2 99 82.8
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 2.4e-33 147.5 220 48.2
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.5e-31 139.4 295 38.0
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 4.1e-25 120.2 82 74.4
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 7.2e-22 109.4 60 90.0
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 3.7e-18 97.1 82 63.4
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 1.4e-17 95.1 59 81.4
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 1.4e-17 95.1 59 81.4
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 1.8e-17 94.7 87 58.6
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.8e-15 87.0 90 51.1
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 8.5e-15 85.9 50 82.0
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 4.2e-14 83.6 46 82.6
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 2.1e-13 81.3 47 85.1
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 7.9e-13 79.3 44 88.6
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 5.7e-11 73.2 132 37.1
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 3.1e-09 67.4 43 79.1
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 4.1e-09 67.0 74 50.0
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 1.2e-08 65.5 74 51.4
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 1.2e-08 65.5 43 67.4
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 1.0e-07 62.4 74 50.0


User provided reference genes

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