Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 2.8e-199 698.4 345 100.0
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 4.6e-189 664.5 330 99.4
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 3.5e-173 611.7 345 86.4
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 1.8e-169 599.4 346 84.7
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 1.4e-166 589.7 374 79.1
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 3.0e-156 555.4 350 78.0
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 5.1e-156 554.7 347 77.5
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 1.9e-155 552.7 344 77.9
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 5.6e-155 551.2 345 77.1
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 3.1e-153 545.4 345 78.6
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 5.3e-153 544.7 345 75.1
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 6.9e-153 544.3 345 75.7
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.2e-152 543.5 346 75.4
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 2.0e-152 542.7 345 75.9
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 2.6e-152 542.3 346 76.0
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 7.6e-152 540.8 345 76.2
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 6.4e-151 537.7 343 74.9
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 6.4e-151 537.7 306 83.7
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 8.4e-151 537.3 346 74.9
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.1e-150 537.0 346 74.9
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 3.2e-150 535.4 345 76.5
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 7.1e-150 534.3 345 73.6
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 9.3e-150 533.9 347 73.5
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 1.2e-149 533.5 349 75.6
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 1.2e-149 533.5 375 69.3
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 2.7e-149 532.3 346 73.1
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 6.0e-149 531.2 345 73.3
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 1.0e-148 530.4 345 73.6
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 1.3e-148 530.0 346 73.4
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 2.3e-148 529.3 346 73.7
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 6.7e-148 527.7 350 73.7
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 1.5e-147 526.6 349 74.5
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 1.9e-147 526.2 345 72.2
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 3.3e-147 525.4 350 71.7
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 4.3e-147 525.0 350 72.3
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 8.1e-146 520.8 349 71.9
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 2.4e-145 519.2 346 74.9
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 3.1e-145 518.8 346 73.4
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 4.0e-145 518.5 354 71.2
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 4.0e-145 518.5 353 72.8
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 9.0e-145 517.3 339 72.6
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.2e-144 516.9 323 77.7
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 1.5e-144 516.5 354 71.5
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 2.0e-144 516.2 348 71.3
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 3.4e-144 515.4 348 72.1
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 2.2e-143 512.7 350 70.6
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 3.8e-143 511.9 347 71.2
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 6.4e-143 511.1 310 81.9
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 6.4e-143 511.1 345 73.9
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 1.1e-142 510.4 352 71.0
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 1.4e-142 510.0 347 72.0
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.9e-142 509.6 346 70.8
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.2e-141 506.9 340 74.1
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 1.6e-141 506.5 318 74.8
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 2.1e-141 506.1 341 71.3
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 6.0e-141 504.6 346 70.8
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 7.9e-141 504.2 349 70.5
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 1.0e-140 503.8 340 73.8
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 1.8e-140 503.1 345 70.7
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 6.7e-140 501.1 341 72.1
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 1.9e-139 499.6 335 72.2
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 1.9e-139 499.6 346 71.7
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.3e-138 496.9 346 70.8
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 1.3e-138 496.9 304 78.3
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 2.1e-138 496.1 340 71.5
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 2.1e-138 496.1 340 71.5
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 6.2e-138 494.6 315 74.9
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 6.2e-138 494.6 340 71.8
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 3.1e-137 492.3 343 69.1
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 4.0e-137 491.9 346 71.1
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 4.5e-136 488.4 306 75.2
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 4.5e-136 488.4 346 66.8
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 1.7e-135 486.5 340 70.3
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 6.5e-135 484.6 299 79.3
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.5e-134 482.6 308 75.3
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 3.2e-134 482.3 343 69.7
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 3.2e-134 482.3 380 63.2
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 1.2e-133 480.3 318 74.5
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.3e-132 476.9 327 71.9
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 3.9e-132 475.3 340 67.4
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.9e-131 473.0 311 74.9
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 4.3e-131 471.9 319 73.7
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 7.4e-131 471.1 321 72.9
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 1.3e-130 470.3 319 73.0
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 2.1e-130 469.5 322 72.0
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 8.2e-130 467.6 332 71.1
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 1.4e-129 466.8 279 79.2
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 2.4e-129 466.1 351 66.7
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 2.9e-127 459.1 352 64.5
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 6.5e-127 458.0 339 66.4
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 1.4e-126 456.8 310 72.3
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 2.5e-126 456.1 331 65.3
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 4.2e-126 455.3 311 69.8
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 4.6e-125 451.8 279 76.3
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 1.8e-124 449.9 280 77.9
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.3e-124 449.5 284 75.7
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 5.1e-124 448.4 340 64.1
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 8.7e-124 447.6 308 67.9
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 8.7e-124 447.6 293 75.8
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 3.3e-123 445.7 285 74.7
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 1.4e-121 440.3 344 62.2
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 4.1e-121 438.7 353 63.7
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 6.9e-121 438.0 314 65.0
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.3e-119 433.7 342 62.3
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.7e-119 433.3 326 63.2
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 2.7e-117 426.0 330 62.7
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 2.7e-117 426.0 330 62.7
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 6.1e-117 424.9 330 62.4
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 6.1e-117 424.9 341 64.8
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 7.9e-117 424.5 314 63.7
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 3.0e-116 422.5 312 63.8
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 5.1e-116 421.8 333 61.0
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 8.8e-116 421.0 324 67.9
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 4.4e-115 418.7 312 63.5
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 1.3e-114 417.2 323 62.2
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 6.3e-114 414.8 310 68.4
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.8e-113 413.3 316 62.7
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 9.1e-113 411.0 325 61.8
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 2.2e-111 406.4 351 62.7
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 1.1e-110 404.1 351 62.1
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.5e-107 393.7 282 64.2
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 3.3e-107 392.5 356 58.7
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 7.4e-107 391.3 262 71.4
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 6.3e-106 388.3 386 53.9
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 9.4e-102 374.4 251 70.9
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 8.0e-101 371.3 344 56.7
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 2.3e-100 369.8 309 56.3
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 2.3e-100 369.8 303 57.4
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 3.3e-99 365.9 346 56.6
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 1.7e-98 363.6 354 54.2
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 6.3e-98 361.7 325 53.5
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 3.2e-94 349.4 306 54.2
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 7.5e-91 338.2 338 52.4
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 4.5e-88 328.9 235 64.7
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.8e-85 319.7 251 65.3
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 3.6e-85 319.3 335 48.4
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 1.4e-84 317.4 320 57.5
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.1e-81 307.8 284 54.2
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 7.0e-81 305.1 228 66.2
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 8.9e-76 288.1 213 67.6
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 7.5e-75 285.0 164 79.9
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.2e-59 234.6 140 77.9
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 4.4e-59 232.6 163 63.2
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 4.4e-59 232.6 163 63.2
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 2.1e-48 197.2 112 82.1
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.9e-46 190.7 130 70.0
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 5.8e-43 179.1 112 75.9
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 1.1e-41 174.9 324 32.1
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 7.8e-40 168.7 312 34.9
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 2.9e-34 150.2 164 50.0
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 4.2e-33 146.4 318 31.4
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 4.2e-33 146.4 129 58.1
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 1.9e-25 120.9 176 40.9
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 4.2e-25 119.8 85 68.2
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 7.9e-24 115.5 359 29.2
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 2.0e-19 100.9 286 28.7
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 6.5e-18 95.9 105 45.7


User provided reference genes

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