Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 0.0e+00 1221.8 667 100.0
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 0.0e+00 1100.1 685 88.5
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 0.0e+00 1092.4 685 88.2
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 0.0e+00 1090.5 685 87.4
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 3.5e-302 1041.2 690 83.0
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 4.5e-302 1040.8 678 84.2
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 7.7e-302 1040.0 746 78.4
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.0e-301 1039.6 746 78.4
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 1.5e-300 1035.8 686 82.7
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 2.5e-300 1035.0 685 83.8
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 1.6e-299 1032.3 655 86.3
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 2.3e-298 1028.5 685 82.8
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 2.6e-297 1025.0 685 82.3
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 1.8e-295 1018.8 667 82.9
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 3.1e-295 1018.1 685 81.0
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 5.3e-295 1017.3 686 82.4
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 5.3e-295 1017.3 685 82.5
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 1.6e-294 1015.8 684 81.9
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 2.0e-294 1015.4 687 82.1
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 1.3e-293 1012.7 668 82.6
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 8.5e-293 1010.0 653 85.0
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.9e-292 1008.8 685 81.9
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.9e-292 1008.8 685 81.6
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 2.5e-292 1008.4 686 80.5
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 6.1e-291 1003.8 680 82.1
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 1.8e-290 1002.3 689 80.8
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 4.0e-290 1001.1 680 81.0
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 4.0e-290 1001.1 679 81.0
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 5.2e-290 1000.7 689 80.0
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 8.8e-290 1000.0 685 81.0
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 1.5e-289 999.2 685 80.7
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 4.4e-289 997.7 685 80.6
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 5.7e-289 997.3 687 80.5
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 5.7e-289 997.3 680 80.7
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 1.3e-288 996.1 687 79.5
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.2e-288 995.3 680 80.7
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 2.8e-288 995.0 685 80.4
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 2.8e-288 995.0 686 81.3
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 8.3e-288 993.4 686 79.7
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 1.8e-287 992.3 678 81.6
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 2.4e-287 991.9 664 82.2
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 5.4e-287 990.7 680 81.0
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 1.2e-286 989.6 689 79.8
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 1.6e-286 989.2 687 80.1
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.7e-286 988.4 680 81.2
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.0e-285 986.5 680 80.7
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.3e-285 986.1 690 78.3
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 2.5e-284 981.9 691 78.4
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 3.3e-284 981.5 689 77.9
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 3.3e-284 981.5 685 80.0
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 5.5e-284 980.7 692 78.3
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 9.5e-284 979.9 664 81.2
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 4.7e-283 977.6 664 81.3
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 6.1e-283 977.2 687 78.6
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 3.4e-281 971.5 691 77.6
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 4.4e-281 971.1 686 79.6
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 4.9e-280 967.6 683 78.2
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 6.3e-280 967.2 685 78.8
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 6.3e-280 967.2 680 79.9
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 1.1e-279 966.5 683 79.4
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 1.8e-279 965.7 687 78.2
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.2e-278 963.0 729 75.6
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 1.2e-278 963.0 660 81.1
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.0e-277 959.9 680 79.1
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 1.0e-277 959.9 687 77.4
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 1.7e-277 959.1 691 77.3
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 8.6e-277 956.8 689 77.4
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 8.6e-277 956.8 685 78.0
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 7.3e-276 953.7 693 76.2
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 9.5e-276 953.4 684 77.3
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 4.7e-275 951.0 725 73.8
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 4.7e-275 951.0 691 76.4
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 1.4e-274 949.5 691 76.3
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 1.8e-274 949.1 684 78.8
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 2.3e-274 948.7 692 77.2
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 4.0e-274 948.0 692 75.9
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 4.0e-274 948.0 687 77.4
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 1.5e-273 946.0 725 73.4
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 5.4e-271 937.6 690 75.9
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 1.0e-269 933.3 655 79.8
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 6.6e-269 930.6 692 75.0
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 1.5e-268 929.5 677 76.8
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 2.5e-268 928.7 692 74.9
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 3.6e-267 924.9 677 74.9
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 1.8e-266 922.5 667 77.4
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 5.2e-266 921.0 688 74.6
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 2.6e-265 918.7 685 75.3
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 7.5e-265 917.1 695 76.1
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 1.7e-264 916.0 689 74.5
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.9e-264 915.2 733 72.2
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 8.3e-264 913.7 573 88.7
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 1.1e-263 913.3 691 74.0
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 4.1e-263 911.4 690 74.3
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 4.1e-263 911.4 690 74.3
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.3e-261 906.4 685 74.7
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 9.5e-260 900.2 685 74.3
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 2.8e-259 898.7 722 70.9
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 6.2e-259 897.5 1035 55.3
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 8.3e-256 887.1 699 73.7
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 2.4e-255 885.6 637 77.6
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 9.2e-255 883.6 682 73.5
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.6e-253 877.1 719 71.6
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 3.3e-252 875.2 685 73.9
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 3.8e-248 861.7 651 74.3
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.2e-247 858.6 719 69.5
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 9.3e-247 857.1 648 72.5
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 3.5e-246 855.1 702 68.9
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.0e-245 853.6 740 69.3
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 3.0e-245 852.0 616 77.8
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 1.9e-236 822.8 670 70.4
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 1.3e-235 820.1 680 67.8
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 1.8e-234 816.2 668 69.6
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 2.5e-220 769.2 668 65.6
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 3.0e-213 745.7 702 64.0
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 4.3e-212 741.9 665 63.2
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 4.8e-211 738.4 669 63.4
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 1.8e-210 736.5 552 76.4
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.4e-199 700.3 652 62.0
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.5e-164 583.9 368 85.1
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 2.7e-161 573.2 424 78.5
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 3.9e-160 569.3 678 50.9
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.9e-151 540.4 401 76.8
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 2.1e-137 493.8 346 73.4
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 3.8e-123 446.4 570 48.9
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 1.0e-104 385.2 418 60.0
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 8.2e-94 349.0 496 49.6
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 4.2e-90 336.7 505 48.7
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.7e-78 298.1 275 65.1
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 3.7e-78 297.0 704 32.0
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 4.1e-53 213.8 543 34.6
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.6e-49 201.8 185 63.8
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 2.8e-49 201.1 129 81.4
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 3.7e-46 190.7 775 30.8
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.7e-44 184.5 157 65.6
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 3.9e-43 180.6 126 75.4
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.4e-39 167.5 94 89.4
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 4.4e-31 140.6 623 25.8
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 3.0e-27 127.9 93 78.5
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 7.1e-21 106.7 660 21.8
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 9.6e-18 96.3 71 73.2
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 3.1e-16 91.3 737 23.5
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 2.0e-15 88.6 109 56.9
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 1.1e-13 82.8 82 64.6
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 5.4e-13 80.5 199 37.7
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 5.6e-10 70.5 82 59.8
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 5.6e-10 70.5 43 74.4
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 2.1e-09 68.6 54 66.7
Cre04.g223900 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 1.7e-06 58.9 245 21.6
Hund02405 Selenicereus undatus HOM05D004837 ORTHO05D005741 2.2e-06 58.5 28 96.4


User provided reference genes

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