Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 8.3e-185 650.2 322 100.0
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 9.3e-152 540.4 320 86.2
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 1.7e-137 493.0 322 76.7
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 5.3e-123 444.9 317 71.6
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 1.2e-122 443.7 313 70.3
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 5.0e-121 438.3 310 70.0
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.3e-118 430.3 309 70.6
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 1.8e-118 429.9 315 67.6
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 1.8e-118 429.9 315 67.6
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 8.7e-118 427.6 310 68.4
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 1.9e-117 426.4 310 68.4
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 2.5e-117 426.0 310 67.4
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 1.3e-116 423.7 310 67.7
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 6.3e-116 421.4 310 67.1
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 1.1e-115 420.6 310 66.8
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 1.1e-115 420.6 313 64.2
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 1.3e-113 413.7 319 64.6
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 2.9e-113 412.5 313 65.5
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 8.5e-113 411.0 304 66.8
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 1.4e-112 410.2 311 65.0
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 2.5e-112 409.5 313 64.5
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 7.2e-112 407.9 301 67.4
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 7.2e-112 407.9 323 64.1
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 7.9e-111 404.4 315 65.4
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 1.0e-110 404.1 313 63.6
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 1.3e-108 397.1 313 64.2
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 1.3e-108 397.1 313 64.2
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 4.8e-108 395.2 312 64.1
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 1.1e-107 394.0 307 63.5
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 5.3e-107 391.7 316 61.7
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 2.0e-106 389.8 341 60.7
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 2.0e-106 389.8 341 60.7
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 2.6e-106 389.4 312 62.2
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 3.4e-106 389.0 311 64.0
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 7.7e-106 387.9 311 62.7
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 7.7e-106 387.9 317 59.6
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 1.0e-105 387.5 317 59.9
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 6.5e-105 384.8 311 60.8
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 2.5e-104 382.9 311 62.1
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 1.2e-103 380.6 300 64.7
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 1.0e-102 377.5 262 72.5
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 2.3e-102 376.3 311 60.8
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 6.7e-102 374.8 313 60.4
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 2.6e-101 372.9 311 60.5
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 3.3e-101 372.5 319 58.9
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 1.7e-100 370.2 312 60.6
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 3.7e-100 369.0 307 61.9
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 4.8e-100 368.6 305 60.7
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 6.3e-100 368.2 312 58.7
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 1.1e-99 367.5 306 62.1
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 1.1e-99 367.5 306 62.1
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 1.1e-99 367.5 304 60.9
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 1.4e-99 367.1 314 59.6
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 7.7e-98 361.3 275 67.3
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 7.7e-98 361.3 311 61.1
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 1.7e-97 360.1 326 59.2
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 3.8e-97 359.0 301 60.8
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 1.5e-96 357.1 313 58.1
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 1.0e-94 350.9 315 55.2
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 1.8e-94 350.1 303 57.4
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 4.4e-93 345.5 311 55.9
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.3e-92 344.0 310 56.1
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 2.4e-91 339.7 369 50.7
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 1.2e-90 337.4 312 54.8
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.6e-90 337.0 311 56.9
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 3.5e-90 335.9 301 59.5
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 1.5e-88 330.5 313 56.2
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 2.5e-88 329.7 311 56.9
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 3.2e-88 329.3 252 64.3
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 7.2e-88 328.2 314 55.7
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 7.2e-88 328.2 252 65.1
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 1.2e-87 327.4 312 55.4
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 2.7e-87 326.2 310 56.1
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 6.1e-87 325.1 254 64.6
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 8.0e-87 324.7 288 58.0
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 4.0e-86 322.4 278 59.7
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 2.0e-85 320.1 310 53.9
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 2.6e-85 319.7 308 53.2
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 3.4e-85 319.3 311 54.0
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 3.4e-85 319.3 321 54.5
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 4.4e-85 318.9 316 53.5
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 2.8e-84 316.2 313 54.0
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 8.3e-84 314.7 264 61.4
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 4.1e-83 312.4 305 51.1
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 5.9e-82 308.5 325 51.7
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 2.2e-81 306.6 165 84.2
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 5.0e-81 305.4 324 51.9
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 6.5e-81 305.1 300 53.0
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 1.1e-80 304.3 324 51.9
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 9.4e-80 301.2 303 53.8
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 3.6e-79 299.3 318 50.3
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 8.8e-78 294.7 310 49.7
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 4.4e-77 292.4 251 60.2
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 4.4e-77 292.4 165 80.0
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 1.7e-76 290.4 267 56.2
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 3.1e-75 286.2 314 48.4
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 4.1e-75 285.8 256 57.4
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 7.3e-72 275.0 207 67.1
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 1.4e-70 270.8 247 57.1
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 2.6e-69 266.5 326 46.0
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 7.5e-69 265.0 252 55.6
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 1.8e-67 260.4 269 51.7
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 1.6e-63 247.3 318 47.5
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 3.6e-63 246.1 325 42.8
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 8.0e-63 245.0 310 48.1
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 2.0e-61 240.4 150 72.7
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.0e-61 240.4 313 43.8
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 8.6e-57 224.9 225 56.4
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.2e-55 221.1 332 39.2
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 7.5e-53 211.8 286 44.8
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 2.4e-51 206.8 208 54.8
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 3.2e-51 206.5 313 41.9
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 4.1e-51 206.1 184 56.0
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 5.4e-51 205.7 148 62.2
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.0e-49 201.4 322 37.9
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 6.8e-46 188.7 101 87.1
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 4.4e-45 186.0 168 57.1
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 1.4e-38 164.5 279 37.6
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 2.6e-37 160.2 130 59.2
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 1.1e-35 154.8 100 70.0
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 4.2e-35 152.9 99 68.7
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 5.6e-32 142.5 204 41.2
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 8.1e-31 138.7 104 67.3
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.7e-20 104.4 91 57.1
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 4.2e-19 99.8 58 77.6
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 3.0e-17 93.6 58 70.7
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 3.4e-13 80.1 104 43.3
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 1.0e-12 78.6 46 71.7
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 9.3e-11 72.0 129 39.5
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 3.0e-09 67.0 55 54.5


User provided reference genes

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