Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.6e-164 582.0 300 100.0
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.9e-138 496.1 319 81.2
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.4e-133 479.9 348 74.1
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.5e-132 476.5 310 76.5
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 4.2e-130 468.4 321 75.4
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 7.1e-130 467.6 344 73.0
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 1.2e-129 466.8 351 70.4
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 2.7e-129 465.7 322 73.6
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 1.3e-128 463.4 333 70.6
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 1.9e-127 459.5 325 72.0
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 1.9e-127 459.5 329 71.1
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 5.6e-127 458.0 329 70.8
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 5.6e-127 458.0 329 70.8
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.1e-126 456.1 311 73.0
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.8e-126 455.7 311 74.0
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 1.4e-125 453.4 307 74.6
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 5.3e-125 451.4 325 70.5
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 6.9e-125 451.1 326 70.9
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 9.0e-125 450.7 325 70.2
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 1.2e-124 450.3 327 69.4
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 3.2e-122 442.2 341 69.5
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 9.3e-122 440.7 316 70.6
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 1.2e-121 440.3 328 68.0
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 1.6e-121 439.9 340 67.1
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 1.8e-120 436.4 302 72.2
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 6.7e-120 434.5 386 61.7
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 1.5e-119 433.3 323 67.8
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 3.3e-119 432.2 323 67.5
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 9.6e-119 430.6 326 69.0
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 1.6e-118 429.9 342 66.7
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 3.7e-118 428.7 331 68.0
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 8.1e-118 427.6 327 66.7
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 1.1e-117 427.2 334 67.4
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 1.1e-117 427.2 304 70.4
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 1.1e-117 427.2 332 67.8
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.1e-117 427.2 327 66.1
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 1.1e-117 427.2 320 67.5
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 3.1e-117 425.6 331 67.4
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 1.2e-116 423.7 327 66.4
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 3.4e-116 422.2 326 66.3
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 5.8e-116 421.4 332 66.3
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 7.6e-116 421.0 385 59.2
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 7.6e-116 421.0 264 78.0
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 1.7e-115 419.9 331 66.5
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 3.8e-115 418.7 310 68.4
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 3.8e-115 418.7 337 65.3
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 1.9e-114 416.4 390 58.2
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 3.2e-114 415.6 314 66.9
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 9.3e-114 414.1 329 65.0
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 6.0e-113 411.4 332 65.7
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 7.9e-113 411.0 254 80.7
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 1.0e-112 410.6 327 64.5
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.0e-112 410.6 286 72.7
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 2.3e-112 409.5 331 65.6
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.3e-112 409.5 331 65.3
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 4.3e-111 405.2 314 68.5
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 3.7e-110 402.1 298 69.5
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 3.7e-110 402.1 337 61.4
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 4.8e-110 401.7 334 62.6
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 4.8e-110 401.7 262 75.6
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 3.1e-109 399.1 360 60.6
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 5.3e-109 398.3 357 60.5
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 6.9e-109 397.9 377 58.4
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 5.9e-108 394.8 254 74.4
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 1.0e-107 394.0 254 74.0
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 1.0e-107 394.0 254 74.0
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 1.7e-107 393.3 362 58.8
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 2.2e-107 392.9 335 63.6
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 6.5e-107 391.3 335 63.0
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 1.4e-106 390.2 343 58.9
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 5.5e-106 388.3 389 55.0
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 9.3e-106 387.5 382 56.8
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 1.6e-105 386.7 333 60.4
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.6e-105 386.7 390 55.9
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.8e-104 383.3 328 62.8
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 1.6e-102 376.7 326 60.1
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 6.3e-102 374.8 337 57.9
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 4.5e-100 368.6 341 59.8
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 7.7e-100 367.9 330 59.1
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 3.8e-99 365.5 349 58.2
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.4e-98 363.6 230 74.8
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 1.4e-98 363.6 259 67.6
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 7.2e-98 361.3 224 77.2
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 1.6e-97 360.1 275 68.0
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 3.6e-97 359.0 214 78.0
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 4.6e-97 358.6 207 79.7
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.7e-94 350.1 334 56.3
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 4.8e-94 348.6 259 67.2
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 4.8e-94 348.6 308 60.1
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 2.4e-93 346.3 329 54.7
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 2.6e-92 342.8 266 63.9
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 1.7e-91 340.1 321 56.4
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 2.2e-91 339.7 294 61.2
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 2.5e-90 336.3 318 55.0
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 6.1e-89 331.6 321 54.5
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 2.3e-88 329.7 320 55.3
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 8.8e-88 327.8 317 58.4
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 1.3e-86 323.9 319 53.3
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 3.7e-86 322.4 319 52.0
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 7.0e-85 318.2 344 52.6
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 5.5e-82 308.5 307 51.5
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.6e-81 305.8 254 62.2
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 4.7e-81 305.4 254 61.8
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 1.3e-78 297.4 305 49.5
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 1.1e-77 294.3 174 80.5
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 3.5e-76 289.3 161 86.3
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 5.9e-76 288.5 321 48.9
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 7.7e-76 288.1 320 48.1
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 7.7e-76 288.1 320 48.1
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 1.3e-75 287.3 320 48.4
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 2.2e-75 286.6 321 48.9
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 5.0e-75 285.4 320 47.8
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 5.0e-75 285.4 321 48.6
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 3.2e-74 282.7 317 48.6
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 1.2e-73 280.8 321 47.7
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 1.6e-73 280.4 242 62.8
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 1.0e-72 277.7 320 46.9
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.0e-72 277.7 153 88.2
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 2.5e-66 256.5 159 74.2
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 3.7e-62 242.7 169 67.5
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 2.7e-60 236.5 264 47.0
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 8.6e-59 231.5 150 74.7
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 6.8e-56 221.9 114 97.4
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 5.7e-55 218.8 310 41.0
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 4.9e-54 215.7 226 49.1
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.8e-48 197.2 164 67.1
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.6e-41 174.1 100 86.0
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 3.1e-40 169.9 119 68.9
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 3.1e-32 143.3 311 34.7
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 1.5e-31 141.0 100 69.0
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.2e-28 131.3 80 76.2
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.2e-23 114.8 113 63.7
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 9.6e-18 95.1 125 50.4
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.8e-17 93.6 56 67.9
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 9.9e-15 85.1 76 56.6
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 5.4e-13 79.3 48 75.0
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 2.1e-12 77.4 55 72.7
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 2.1e-12 77.4 92 53.3
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 2.5e-10 70.5 50 64.0
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 1.7e-06 57.8 102 34.3


User provided reference genes

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