Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 3.1e-128 461.8 238 100.0
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 9.0e-128 460.3 238 99.2
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 6.7e-107 391.0 237 82.7
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 1.8e-104 382.9 237 81.0
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 8.5e-94 347.4 236 72.5
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 1.4e-93 346.7 235 74.9
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 9.4e-93 344.0 237 70.9
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 1.2e-92 343.6 237 74.7
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 6.7e-91 337.8 238 71.8
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 2.2e-89 332.8 208 79.3
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 2.8e-89 332.4 237 67.9
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.1e-88 330.5 240 69.6
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 4.1e-88 328.6 238 70.2
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 9.1e-88 327.4 231 70.1
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 9.1e-88 327.4 219 76.7
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.0e-86 323.9 235 69.4
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 1.9e-85 319.7 237 67.5
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 2.5e-85 319.3 237 65.0
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 3.2e-85 318.9 238 68.9
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 4.2e-85 318.5 236 68.6
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 7.2e-85 317.8 238 68.1
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 9.4e-85 317.4 236 66.9
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 1.2e-84 317.0 233 67.8
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 3.6e-84 315.5 236 66.9
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 3.6e-84 315.5 237 66.2
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 3.6e-84 315.5 237 66.2
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 4.7e-84 315.1 236 66.9
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 6.1e-84 314.7 236 66.5
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 6.1e-84 314.7 236 67.4
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 5.2e-83 311.6 238 67.6
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 6.7e-83 311.2 237 62.9
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 6.7e-83 311.2 229 67.2
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 8.8e-83 310.8 258 61.2
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 1.5e-82 310.1 236 65.7
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 2.6e-82 309.3 234 67.9
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 4.4e-82 308.5 236 65.7
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.7e-81 306.6 239 66.5
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 2.8e-81 305.8 239 66.5
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 2.8e-81 305.8 234 67.1
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 2.8e-81 305.8 236 64.0
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 3.7e-81 305.4 236 64.8
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 3.7e-81 305.4 237 62.0
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 3.7e-81 305.4 231 65.8
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.1e-80 303.9 238 66.0
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 1.1e-80 303.9 236 66.1
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 7.0e-80 301.2 234 65.0
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 1.2e-79 300.4 264 59.5
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 1.2e-79 300.4 231 65.4
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 2.7e-79 299.3 239 65.7
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 1.3e-78 297.0 233 63.5
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 1.3e-78 297.0 206 69.4
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 1.7e-73 280.0 196 69.4
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 2.8e-73 279.3 196 73.0
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 7.0e-72 274.6 225 64.4
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 2.0e-71 273.1 237 59.1
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 2.0e-71 273.1 228 60.5
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 7.7e-71 271.2 238 58.8
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 1.0e-70 270.8 240 57.9
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 1.1e-69 267.3 207 64.3
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 1.6e-68 263.5 238 58.0
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 3.6e-68 262.3 194 67.0
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.0e-67 260.8 219 57.5
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 1.8e-67 260.0 195 66.7
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 1.8e-67 260.0 210 64.8
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 1.2e-66 257.3 195 65.6
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 4.4e-66 255.4 233 55.8
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 5.7e-66 255.0 237 55.7
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 1.7e-65 253.4 237 55.3
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.7e-65 253.4 262 55.0
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 3.7e-65 252.3 232 54.7
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 3.7e-65 252.3 237 55.3
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 4.9e-65 251.9 237 55.3
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 6.3e-65 251.5 238 55.5
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 6.3e-65 251.5 294 49.7
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 8.3e-65 251.1 237 54.9
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 8.3e-65 251.1 237 54.9
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 8.3e-65 251.1 237 54.9
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 1.1e-64 250.8 233 55.4
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 1.1e-64 250.8 233 55.4
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.1e-64 250.8 236 53.0
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 1.1e-64 250.8 184 69.6
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 4.1e-64 248.8 233 55.8
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 5.4e-64 248.4 250 53.6
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 9.2e-64 247.7 237 54.9
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 9.2e-64 247.7 238 55.5
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 1.9e-61 240.0 207 61.4
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 2.5e-61 239.6 240 51.7
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 7.3e-61 238.0 239 51.0
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.2e-60 237.3 195 61.5
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 8.0e-60 234.6 237 54.0
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 4.4e-58 228.8 232 53.9
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 1.3e-57 227.3 237 49.4
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 2.9e-57 226.1 239 52.3
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.9e-56 223.4 237 52.7
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 1.6e-55 220.3 234 47.9
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 7.8e-55 218.0 195 57.9
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 1.0e-54 217.6 233 54.1
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 2.5e-53 213.0 174 62.1
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 4.3e-53 212.2 237 47.7
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 8.9e-51 204.5 228 48.2
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.3e-49 200.7 234 47.9
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.3e-49 200.7 270 46.7
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 6.2e-44 181.8 235 43.0
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 8.1e-44 181.4 235 44.3
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 1.4e-43 180.6 162 56.2
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 1.5e-42 177.2 230 45.2
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 2.0e-42 176.8 235 43.0
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 2.2e-41 173.3 235 40.0
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 2.7e-39 166.4 205 46.8
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 4.3e-37 159.1 230 40.4
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 8.1e-36 154.8 149 52.3
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 2.6e-34 149.8 116 62.1
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 1.7e-33 147.1 109 63.3
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 2.9e-33 146.4 237 39.7
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 3.2e-32 142.9 183 47.5
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 4.2e-32 142.5 105 63.8
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 3.0e-30 136.3 110 61.8
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 3.3e-29 132.9 150 47.3
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 5.6e-29 132.1 205 40.0
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 2.0e-26 123.6 105 61.0
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 3.5e-23 112.8 103 56.3
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 6.6e-22 108.6 106 52.8
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 8.7e-22 108.2 137 46.7
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 3.3e-21 106.3 104 52.9
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 3.3e-21 106.3 133 47.4
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 7.3e-21 105.1 117 47.9
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 2.1e-20 103.6 165 40.0
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 1.2e-18 97.8 218 30.3
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 7.6e-18 95.1 107 49.5
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 1.7e-17 94.0 104 46.2
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 2.7e-15 86.7 71 54.9
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 6.2e-12 75.5 71 47.9
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 3.1e-11 73.2 119 37.8
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 1.3e-09 67.8 75 50.7
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 1.1e-08 64.7 114 37.7
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 1.1e-08 64.7 183 27.9
Lsat_1_v5_gn_4_15661 Lactuca sativa HOM05D001315 ORTHO05D004199 5.5e-08 62.4 92 43.5
Lsat_1_v5_gn_5_58841 Lactuca sativa HOM05D001315 ORTHO05D004199 5.5e-08 62.4 92 43.5
Lsat_1_v5_gn_6_15761 Lactuca sativa HOM05D001315 ORTHO05D004199 5.5e-08 62.4 92 43.5
Pp3c18_14820 Physcomitrium patens HOM05D005414 ORTHO05D006844 2.7e-07 60.1 42 66.7
Lsat_1_v5_gn_3_108880 Lactuca sativa HOM05D002370 ORTHO05D022851 2.3e-06 57.0 91 37.4


User provided reference genes

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