Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 1.2e-62 243.0 128 100.0
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 2.5e-55 218.8 128 85.9
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 1.1e-50 203.4 137 76.6
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 2.4e-50 202.2 129 78.3
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 3.1e-50 201.8 128 77.3
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 5.8e-49 197.6 131 76.3
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 5.8e-49 197.6 123 81.3
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 7.6e-49 197.2 128 74.2
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 1.7e-48 196.1 129 74.4
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 2.9e-48 195.3 128 74.2
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 3.8e-48 194.9 128 73.4
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 3.8e-48 194.9 123 80.5
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 6.5e-48 194.1 128 75.0
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 6.5e-48 194.1 128 72.7
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 1.1e-47 193.4 127 74.0
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 1.9e-47 192.6 131 73.3
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 2.5e-47 192.2 130 71.5
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 2.5e-47 192.2 128 73.4
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 4.2e-47 191.4 130 73.8
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 4.2e-47 191.4 129 70.5
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 7.1e-47 190.7 130 71.5
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 9.3e-47 190.3 131 73.3
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 9.3e-47 190.3 131 73.3
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 1.2e-46 189.9 128 71.1
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 1.2e-46 189.9 128 73.4
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 1.6e-46 189.5 130 73.8
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 1.6e-46 189.5 130 77.7
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 2.7e-46 188.7 131 71.0
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 6.1e-46 187.6 130 76.2
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 7.9e-46 187.2 129 72.9
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 1.0e-45 186.8 129 75.2
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 1.3e-45 186.4 131 72.5
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 1.8e-45 186.0 129 70.5
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 3.0e-45 185.3 127 74.8
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 3.0e-45 185.3 130 70.8
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 3.0e-45 185.3 126 73.8
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 3.9e-45 184.9 129 69.8
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 3.9e-45 184.9 132 69.7
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 6.7e-45 184.1 123 74.0
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 6.7e-45 184.1 128 70.3
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 6.7e-45 184.1 129 69.0
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 8.7e-45 183.7 136 70.6
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 1.1e-44 183.3 126 70.6
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 1.5e-44 183.0 129 68.2
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 1.5e-44 183.0 129 75.2
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 1.5e-44 183.0 132 70.5
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 1.9e-44 182.6 121 75.2
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 1.9e-44 182.6 124 73.4
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 1.9e-44 182.6 125 71.2
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 3.3e-44 181.8 125 70.4
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 4.3e-44 181.4 130 69.2
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 5.7e-44 181.0 128 75.0
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 5.7e-44 181.0 124 71.8
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 9.7e-44 180.3 129 69.8
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 9.7e-44 180.3 130 70.8
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 2.2e-43 179.1 129 69.8
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 2.8e-43 178.7 124 70.2
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 2.8e-43 178.7 129 72.9
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 3.7e-43 178.3 129 69.0
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 8.2e-43 177.2 124 75.0
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 1.4e-42 176.4 124 72.6
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 5.3e-42 174.5 89 91.0
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 2.0e-41 172.6 101 82.2
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 3.4e-41 171.8 120 69.2
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 7.7e-41 170.6 121 68.6
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 7.7e-41 170.6 121 68.6
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 7.7e-41 170.6 130 70.8
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 1.3e-40 169.9 128 69.5
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 1.3e-40 169.9 113 74.3
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 1.3e-40 169.9 117 74.4
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 5.0e-40 167.9 117 72.6
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 5.0e-40 167.9 130 64.6
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 1.1e-39 166.8 125 74.4
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 1.9e-39 166.0 106 75.5
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 4.2e-39 164.9 124 68.5
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 7.2e-39 164.1 110 72.7
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 7.2e-39 164.1 119 69.7
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 9.4e-39 163.7 123 65.0
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 2.7e-38 162.2 107 73.8
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 4.6e-38 161.4 89 87.6
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 1.4e-37 159.8 135 66.7
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 2.5e-36 155.6 89 78.7
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 3.3e-36 155.2 105 70.5
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 1.7e-35 152.9 84 81.0
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 1.1e-31 140.2 164 48.8
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 1.4e-31 139.8 92 75.0
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 3.0e-29 132.1 85 71.8
Cre17.g729950 Chlamydomonas reinhardtii HOM05D007312 ORTHO05D009209 2.0e-28 129.4 85 70.6
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 2.0e-28 129.4 85 70.6
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 1.2e-25 120.2 96 62.5
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 2.9e-24 115.5 92 64.1
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 8.5e-24 114.0 110 57.3
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 8.8e-21 104.0 97 63.9
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 2.0e-20 102.8 82 64.6
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 3.3e-20 102.1 87 58.6
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 7.4e-20 100.9 82 63.4
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 1.7e-19 99.8 81 64.2
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 6.3e-19 97.8 83 62.7
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 2.6e-17 92.4 89 56.2
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 1.3e-16 90.1 84 61.9
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 5.0e-16 88.2 81 64.2
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 5.5e-15 84.7 82 64.6
Lalb_Chr09g0328681 Lupinus albus HOM05D007312 ORTHO05D009209 7.2e-15 84.3 41 85.4
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 1.0e-13 80.5 86 47.7
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 2.4e-10 69.3 41 75.6
Lalb_Chr09g0328671 Lupinus albus HOM05D007312 ORTHO05D009209 4.5e-09 65.1 88 47.7
Potri.015G124601 Populus trichocarpa HOM05D007312 ORTHO05D009209 2.2e-08 62.8 42 66.7


User provided reference genes

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