Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025602 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 4.1e-44 181.4 120 100.0
CSS0006442 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 1.7e-42 176.0 120 94.2
vmacro06547 Vaccinium macrocarpon HOM05D007326 ORTHO05D009048 2.5e-25 119.0 120 59.2
TWI23G0901 Tripterygium wilfordii HOM05D007326 ORTHO05D009048 1.4e-23 113.2 115 67.0
Rhsim09G0011500 Rhododendron simsii HOM05D007326 ORTHO05D009048 1.2e-22 110.2 126 51.6
TAR629G0302 Trochodendron aralioides HOM05D007326 ORTHO05D009048 9.7e-22 107.1 124 53.2
Hma1.2p1_0538F.1_g174400 Hydrangea macrophylla HOM05D007326 ORTHO05D009048 2.2e-21 105.9 123 62.6
CiPaw.06G009800 Carya illinoinensis HOM05D007326 ORTHO05D009048 1.8e-20 102.8 122 58.2
CANSAT21G2203 Cannabis sativa HOM05D007326 ORTHO05D009048 7.7e-19 97.4 120 60.8
Thecc.03G195600 Theobroma cacao HOM05D007326 ORTHO05D009048 1.7e-18 96.3 114 56.1
Haze_14278 Corylus avellana HOM05D007326 ORTHO05D009048 1.5e-17 93.2 122 45.9
Duzib205G1092 Durio zibethinus HOM05D007326 ORTHO05D009048 2.5e-17 92.4 121 49.6
Actinidia06159 Actinidia chinensis HOM05D007326 ORTHO05D009048 5.5e-17 91.3 131 51.1
Atru.chr1.147 Acer truncatum HOM05D007326 ORTHO05D009048 7.2e-17 90.9 124 50.8
Dinv29296 Davidia involucrata HOM05D007326 ORTHO05D009048 7.2e-17 90.9 94 69.1
Gohir.A11G014200 Gossypium hirsutum HOM05D007326 ORTHO05D009048 2.1e-16 89.4 117 47.0
COL.COLO4_03426 Corchorus olitorius HOM05D007326 ORTHO05D009048 4.7e-16 88.2 114 45.6
Gohir.D11G014400 Gossypium hirsutum HOM05D007326 ORTHO05D009048 4.7e-16 88.2 117 46.2
Gorai.007G014800 Gossypium raimondii HOM05D007326 ORTHO05D009048 4.7e-16 88.2 117 46.2
Actinidia06160 Actinidia chinensis HOM05D007326 ORTHO05D009048 6.1e-16 87.8 111 50.5
Rhsim03G0206100 Rhododendron simsii HOM05D043765 ORTHO05D009048 6.1e-16 87.8 111 49.5
Manes.06G159200 Manihot esculenta HOM05D007326 ORTHO05D009048 1.4e-15 86.7 120 53.3
VMungo0464G1195 Vigna mungo HOM05D007326 ORTHO05D009048 2.3e-15 85.9 100 52.0
Prupe.2G311900 Prunus persica HOM05D007326 ORTHO05D009048 3.0e-15 85.5 115 53.0
Ciclev10006260m.g Citrus clementina HOM05D007326 ORTHO05D009048 8.8e-15 84.0 118 43.2
Nn4g24310 Nelumbo nucifera HOM05D000291 ORTHO05D009048 1.2e-14 83.6 123 45.5
Glyma.07G086800 Glycine max HOM05D007326 ORTHO05D009048 1.5e-14 83.2 95 48.4
Solyc03g083450.1 Solanum lycopersicum HOM05D007326 ORTHO05D009048 3.4e-14 82.0 123 42.3
Actinidia06153 Actinidia chinensis HOM05D003276 ORTHO05D003809 7.5e-14 80.9 120 45.0
Nitab4.5_0002492g0030 Nicotiana tabacum HOM05D007326 ORTHO05D009048 7.5e-14 80.9 123 42.3
Sopen03g023220 Solanum pennellii HOM05D007326 ORTHO05D009048 7.5e-14 80.9 125 43.2
Nitab4.5_0000714g0090 Nicotiana tabacum HOM05D007326 ORTHO05D009048 9.8e-14 80.5 125 40.8
Lsat_1_v5_gn_9_58181 Lactuca sativa HOM05D007326 ORTHO05D009048 2.2e-13 79.3 109 49.5
TPR.G14875 Trifolium pratense HOM05D007326 ORTHO05D009048 2.8e-13 79.0 112 42.0
Aqoxy7G00103 Aquilegia oxysepala HOM05D007326 ORTHO05D009048 4.8e-13 78.2 126 42.1
Glyma.09G190100 Glycine max HOM05D007326 ORTHO05D009048 8.3e-13 77.4 90 46.7
MBI06_g08457_MAGBIO Magnolia biondii HOM05D007326 ORTHO05D009048 8.3e-13 77.4 125 41.6
ECA232G0297 Erigeron canadensis HOM05D007326 ORTHO05D009048 1.1e-12 77.0 106 43.4
Oeu030278.1 Olea europaea HOM05D007326 ORTHO05D009048 1.8e-12 76.3 125 43.2
CAN.G108.61 Capsicum annuum HOM05D007326 ORTHO05D009048 2.4e-12 75.9 126 42.1
PGSC0003DMG400009118 Solanum tuberosum HOM05D007326 ORTHO05D009048 3.1e-12 75.5 119 42.0
Oeu037093.1 Olea europaea HOM05D007326 ORTHO05D009048 4.1e-12 75.1 121 41.3
Potri.015G017700 Populus trichocarpa HOM05D007326 ORTHO05D009048 4.1e-12 75.1 119 41.2
PGR042G3637 Punica granatum HOM05D007326 ORTHO05D009048 4.1e-12 75.1 123 42.3
Cpa.g.sc3.64 Carica papaya HOM05D007326 ORTHO05D009048 1.2e-11 73.6 121 54.5
Medtr3g109290 Medicago truncatula HOM05D007326 ORTHO05D009048 1.2e-11 73.6 32 93.8
Peaxi162Scf00550g00426 Petunia axillaris HOM05D007326 ORTHO05D009048 2.0e-11 72.8 87 44.8
Psat0s2030g0040 Pisum sativum HOM05D007326 ORTHO05D009048 2.0e-11 72.8 103 50.5
Lj1g0012737 Lotus japonicus HOM05D007326 ORTHO05D009048 2.7e-11 72.4 76 61.8
ATR0037G036 Amborella trichopoda HOM05D007326 ORTHO05D009048 3.5e-11 72.0 32 93.8
ATR0762G055 Amborella trichopoda HOM05D007326 ORTHO05D009048 3.5e-11 72.0 32 93.8
Rhsim03G0207100 Rhododendron simsii HOM05D043765 ORTHO05D009048 3.5e-11 72.0 99 47.5
MSTRG.55 Avicennia marina HOM05D007326 ORTHO05D009048 4.5e-11 71.6 123 40.7
EL10Ac9g21379 Beta vulgaris HOM05D007326 ORTHO05D009048 4.5e-11 71.6 32 93.8
Ca_15635_v3 Cicer arietinum L. HOM05D007326 ORTHO05D009048 4.5e-11 71.6 96 62.5
Nitab4.5_0000714g0080 Nicotiana tabacum HOM05D001433 ORTHO05D009048 4.5e-11 71.6 123 38.2
Eucgr.A01472 Eucalyptus grandis HOM05D007326 ORTHO05D009048 5.9e-11 71.2 123 58.5
FAN10G1221 Fragaria x ananassa HOM05D007326 ORTHO05D009048 5.9e-11 71.2 122 58.2
SGA_v2.0_scaffold55G19762 Striga asiatica HOM05D007326 ORTHO05D009048 5.9e-11 71.2 96 41.7
THA.LOC104819263 Tarenaya hassleriana HOM05D007326 ORTHO05D009048 7.7e-11 70.9 32 90.6
SGA_v2.0_scaffold105G30435 Striga asiatica HOM05D007326 ORTHO05D009048 1.0e-10 70.5 86 43.0
Aa31LG1G16060 Aethionema arabicum HOM05D007326 ORTHO05D009048 1.3e-10 70.1 32 90.6
Os06g0157800 Oryza sativa ssp. japonica HOM05D007326 ORTHO05D009048 1.3e-10 70.1 32 90.6
Phvul.004G162900 Phaseolus vulgaris HOM05D007326 ORTHO05D009048 1.3e-10 70.1 105 64.8
ClCG01G000490 Citrullus lanatus HOM05D007326 ORTHO05D009048 1.7e-10 69.7 120 38.3
TPR.G1327 Trifolium pratense HOM05D007326 ORTHO05D009048 1.7e-10 69.7 31 90.3
Ah.04g150610 Amaranthus hybridus HOM05D007326 ORTHO05D009048 2.9e-10 68.9 32 87.5
FAN10G2940 Fragaria x ananassa HOM05D007326 ORTHO05D009048 2.9e-10 68.9 122 57.4
Manes.05G205250 Manihot esculenta HOM05D007326 ORTHO05D009048 2.9e-10 68.9 119 41.2
AL8G43810 Arabidopsis lyrata HOM05D007326 ORTHO05D009048 3.8e-10 68.6 32 87.5
Thhalv10005175m.g Eutrema salsugineum HOM05D007326 ORTHO05D009048 3.8e-10 68.6 32 87.5
Sed0023316 Sechium edule HOM05D007326 ORTHO05D009048 3.8e-10 68.6 32 84.4
A06p32910 Brassica napus HOM05D007326 ORTHO05D009048 5.0e-10 68.2 31 90.3
C03p59560 Brassica napus HOM05D007326 ORTHO05D009048 5.0e-10 68.2 31 90.3
BolC3t18219H Brassica oleracea HOM05D007326 ORTHO05D009048 5.0e-10 68.2 31 90.3
BraA06t26223Z Brassica rapa HOM05D007326 ORTHO05D009048 5.0e-10 68.2 31 90.3
AUR62010038 Chenopodium quinoa HOM05D007326 ORTHO05D009048 5.0e-10 68.2 32 87.5
AUR62013031 Chenopodium quinoa HOM05D007326 ORTHO05D009048 5.0e-10 68.2 32 87.5
Mapoly0007s0050 Marchantia polymorpha HOM05D007326 ORTHO05D009048 5.0e-10 68.2 32 84.4
Sp2g29160 Schrenkiella parvula HOM05D007326 ORTHO05D009048 5.0e-10 68.2 31 90.3
Sc03g0007330 Simmondsia chinensis HOM05D007326 ORTHO05D009048 8.6e-10 67.4 32 87.5
AT5G67490 Arabidopsis thaliana HOM05D007326 ORTHO05D009048 1.1e-09 67.0 32 84.4
BcaB02g09919 Brassica carinata HOM05D007326 ORTHO05D009048 1.1e-09 67.0 32 84.4
Carub.0008s2698 Capsella rubella HOM05D007326 ORTHO05D009048 1.1e-09 67.0 32 84.4
CARHR280100 Cardamine hirsuta HOM05D007326 ORTHO05D009048 1.1e-09 67.0 32 84.4
CDE05G0016 Ceratophyllum demersum HOM05D007326 ORTHO05D009048 1.1e-09 67.0 32 84.4
QL09p009621 Quercus lobata HOM05D007326 ORTHO05D009048 1.5e-09 66.6 31 83.9
Zm00001eb376510 Zea mays HOM05D007326 ORTHO05D009048 2.5e-09 65.9 32 84.4
SEGI_38766 Sequoiadendron giganteum HOM05D007326 ORTHO05D009048 4.2e-09 65.1 32 84.4
TAR375G0672 Trochodendron aralioides HOM05D007326 ORTHO05D009048 4.2e-09 65.1 32 84.4
arahy.Tifrunner.gnm1.ann1.8E5M3M Arachis hypogaea HOM05D007326 ORTHO05D009048 5.5e-09 64.7 92 54.3
arahy.Tifrunner.gnm1.ann1.SUR8QF Arachis hypogaea HOM05D007326 ORTHO05D009048 7.2e-09 64.3 96 56.2
CsaV3_5G000570 Cucumis sativus L. HOM05D007326 ORTHO05D009048 9.5e-09 63.9 121 39.7
RcHm_v2.0_Chr1g0381021 Rosa chinensis HOM05D007326 ORTHO05D009048 1.2e-08 63.5 114 37.7
FAN06G2911 Fragaria x ananassa HOM05D007326 ORTHO05D009048 1.6e-08 63.2 120 40.0
Pp3c23_5100 Physcomitrium patens HOM05D007326 ORTHO05D009048 1.6e-08 63.2 32 78.1
unitig_8.g3560 Utricularia gibba HOM05D000146 ORTHO05D000178 2.8e-08 62.4 28 82.1
MCO04G224 Micromonas commoda HOM05D007326 ORTHO05D009048 1.8e-07 59.7 31 80.6
MELO3C005879.2 Cucumis melo HOM05D007326 ORTHO05D009048 2.3e-07 59.3 122 39.3
PRCOL_00002099 Prasinoderma coloniale HOM05D007326 ORTHO05D009048 4.0e-07 58.5 31 77.4
CBR_g41366 Chara braunii HOM05D007326 ORTHO05D009048 5.2e-07 58.2 26 92.3
FAN01G1037 Fragaria x ananassa HOM05D007326 ORTHO05D009048 6.8e-07 57.8 30 76.7
TAR629G2746 Trochodendron aralioides HOM05D007326 ORTHO05D009048 6.8e-07 57.8 31 77.4
FvH4_7g31800 Fragaria vesca HOM05D000354 ORTHO05D000717 1.2e-06 57.0 25 88.0
FAN03G0879 Fragaria x ananassa HOM05D007326 ORTHO05D009048 3.4e-06 55.5 115 39.1
HPP92_020021 Vanilla planifolia HOM05D007326 ORTHO05D009048 3.4e-06 55.5 30 80.0
Cre02.g073800 Chlamydomonas reinhardtii HOM05D007326 ORTHO05D009048 7.5e-06 54.3 31 71.0


User provided reference genes

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