Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025582 Camellia sinensis var. sinensis HOM05D003654 ORTHO05D004176 5.3e-38 160.6 85 100.0
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 4.3e-16 87.8 90 57.8
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.2e-15 85.5 90 58.9
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 4.5e-13 77.8 74 58.1
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 1.0e-12 76.6 76 56.6
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 3.2e-11 71.6 89 46.1
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.6e-10 68.2 94 44.7
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 3.6e-10 68.2 88 47.7
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 4.6e-10 67.8 89 46.1
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 6.1e-10 67.4 94 43.6
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 1.0e-09 66.6 85 45.9
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.0e-09 66.6 96 43.8
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.3e-09 65.5 90 43.3
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 3.0e-09 65.1 90 45.6
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 3.0e-09 65.1 96 42.7
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 3.0e-09 65.1 96 40.6
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 8.8e-09 63.5 87 46.0
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 8.8e-09 63.5 68 55.9
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.5e-08 62.8 87 43.7
Hma1.2p1_2135F.1_g314830 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.5e-08 62.8 61 52.5
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.5e-08 62.0 87 46.0
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 3.3e-08 61.6 87 42.5
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.3e-08 61.2 88 43.2
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 5.7e-08 60.8 85 42.4
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 5.7e-08 60.8 88 43.2
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 9.7e-08 60.1 107 36.4
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 2.2e-07 58.9 50 56.0
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 2.2e-07 58.9 35 74.3
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 2.8e-07 58.5 83 42.2
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 2.8e-07 58.5 83 42.2
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 2.8e-07 58.5 83 42.2
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 2.8e-07 58.5 38 73.7
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 2.8e-07 58.5 76 39.5
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 3.7e-07 58.2 86 41.9
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.7e-07 58.2 90 41.1
Hma1.2p1_0629F.1_g192090 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 4.8e-07 57.8 61 49.2
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 4.8e-07 57.8 36 77.8
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 6.3e-07 57.4 38 71.1
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 6.3e-07 57.4 89 47.2
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 8.2e-07 57.0 54 59.3
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 8.2e-07 57.0 89 40.4
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 1.1e-06 56.6 89 48.3
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 1.4e-06 56.2 38 68.4
Potri.009G058500 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.4e-06 56.2 31 71.0
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.8e-06 55.8 80 42.5
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 2.4e-06 55.5 38 65.8
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 3.1e-06 55.1 35 71.4
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 3.1e-06 55.1 36 66.7
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 3.1e-06 55.1 36 66.7
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 4.1e-06 54.7 38 68.4
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.1e-06 54.7 91 39.6
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 5.3e-06 54.3 83 39.8
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 5.3e-06 54.3 59 44.1
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 5.3e-06 54.3 53 52.8
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 9.1e-06 53.5 73 43.8
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 9.1e-06 53.5 38 60.5
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 9.1e-06 53.5 36 66.7
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 9.1e-06 53.5 34 70.6


User provided reference genes

Program Settings