Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025576 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 9.6e-43 176.4 88 100.0
Actinidia35549 Actinidia chinensis HOM05D004009 ORTHO05D004617 2.9e-23 111.7 115 54.8
Actinidia26756 Actinidia chinensis HOM05D004009 ORTHO05D004617 3.8e-23 111.3 115 54.8
Dinv40349 Davidia involucrata HOM05D004009 ORTHO05D004617 8.4e-23 110.2 115 56.5
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 1.1e-22 109.8 115 53.9
PSO478G4766 Papaver somniferum HOM05D004009 ORTHO05D004617 1.4e-22 109.4 115 53.9
MSTRG.6369 Avicennia marina HOM05D004009 ORTHO05D004617 2.5e-22 108.6 119 51.3
PSO782G5716 Papaver somniferum HOM05D004009 ORTHO05D004617 3.2e-22 108.2 115 53.0
GSVIVG01031184001 Vitis vinifera HOM05D004009 ORTHO05D004617 9.3e-22 106.7 115 55.7
CSS0030878 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 1.2e-21 106.3 115 55.7
Thecc.05G314000 Theobroma cacao HOM05D004009 ORTHO05D004617 1.2e-21 106.3 115 51.3
Eucgr.F00280 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.1e-21 105.5 95 61.1
SGA_v2.0_scaffold6G03272 Striga asiatica HOM05D004009 ORTHO05D004617 2.1e-21 105.5 119 51.3
Ah.06g189870 Amaranthus hybridus HOM05D004009 ORTHO05D004617 2.7e-21 105.1 115 51.3
SGA_v2.0_scaffold105G30284 Striga asiatica HOM05D004009 ORTHO05D004617 2.7e-21 105.1 119 51.3
SGA_v2.0_scaffold3G01716 Striga asiatica HOM05D004009 ORTHO05D004617 2.7e-21 105.1 119 51.3
Duzib106G1589 Durio zibethinus HOM05D004009 ORTHO05D004617 3.5e-21 104.8 115 53.0
Potri.007G100900 Populus trichocarpa HOM05D004009 ORTHO05D004617 3.5e-21 104.8 115 53.0
Ca_06468_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 6.1e-21 104.0 115 52.2
Aqoxy2G02931 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 7.9e-21 103.6 115 49.6
Ca_11219_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 1.0e-20 103.2 115 50.4
Ciclev10029577m.g Citrus clementina HOM05D004009 ORTHO05D004617 1.0e-20 103.2 115 51.3
Nn5g27800 Nelumbo nucifera HOM05D004009 ORTHO05D004617 1.0e-20 103.2 115 49.6
Duzib128G0284 Durio zibethinus HOM05D004009 ORTHO05D004617 1.3e-20 102.8 115 51.3
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 1.8e-20 102.4 115 52.2
Lj3g0001996 Lotus japonicus HOM05D004009 ORTHO05D004617 1.8e-20 102.4 115 52.2
Cpa.g.sc327.8 Carica papaya HOM05D004009 ORTHO05D004617 2.3e-20 102.1 115 52.2
Cfa006638 Carpinus fangiana HOM05D004009 ORTHO05D004617 2.3e-20 102.1 115 50.4
HPP92_021911 Vanilla planifolia HOM05D004009 ORTHO05D004617 2.3e-20 102.1 111 53.2
Haze_04129 Corylus avellana HOM05D004009 ORTHO05D004617 3.0e-20 101.7 115 51.3
Eucgr.F00277 Eucalyptus grandis HOM05D004009 ORTHO05D004617 3.0e-20 101.7 115 53.9
Eucgr.F00508 Eucalyptus grandis HOM05D004009 ORTHO05D004617 3.0e-20 101.7 115 53.9
CiPaw.08G161200 Carya illinoinensis HOM05D004009 ORTHO05D004617 3.9e-20 101.3 115 50.4
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 3.9e-20 101.3 115 52.2
Oeu053408.1 Olea europaea HOM05D004009 ORTHO05D004617 3.9e-20 101.3 119 49.6
ATR0796G339 Amborella trichopoda HOM05D004009 ORTHO05D004617 5.1e-20 100.9 115 49.6
EL10Ac4g09902 Beta vulgaris HOM05D004009 ORTHO05D004617 5.1e-20 100.9 115 50.4
CANSAT80G2371 Cannabis sativa HOM05D004009 ORTHO05D004617 5.1e-20 100.9 115 49.6
CiPaw.07G022500 Carya illinoinensis HOM05D004009 ORTHO05D004617 5.1e-20 100.9 115 49.6
Zm00001eb088470 Zea mays HOM05D004009 ORTHO05D004617 5.1e-20 100.9 115 48.7
Gohir.A08G208600 Gossypium hirsutum HOM05D004009 ORTHO05D004617 6.7e-20 100.5 115 50.4
QL02p014701 Quercus lobata HOM05D004009 ORTHO05D004617 6.7e-20 100.5 114 52.6
Hund07105 Selenicereus undatus HOM05D004009 ORTHO05D004617 6.7e-20 100.5 115 50.4
ClCG04G003110 Citrullus lanatus HOM05D004009 ORTHO05D004617 8.7e-20 100.1 115 51.3
CsaV3_4G029790 Cucumis sativus L. HOM05D004009 ORTHO05D004617 8.7e-20 100.1 115 51.3
AUR62000751 Chenopodium quinoa HOM05D004009 ORTHO05D004617 1.1e-19 99.8 115 48.7
AUR62005217 Chenopodium quinoa HOM05D004009 ORTHO05D004617 1.1e-19 99.8 115 48.7
Manes.08G116611 Manihot esculenta HOM05D004009 ORTHO05D004617 1.1e-19 99.8 116 49.1
Manes.09G171300 Manihot esculenta HOM05D004009 ORTHO05D004617 1.1e-19 99.8 116 51.7
QL03p019968 Quercus lobata HOM05D004009 ORTHO05D004617 1.1e-19 99.8 114 50.0
TWI56G0677 Tripterygium wilfordii HOM05D004009 ORTHO05D004617 1.1e-19 99.8 115 51.3
Cc02_g34270 Coffea canephora HOM05D004009 ORTHO05D004617 1.5e-19 99.4 119 49.6
DCAR_029387 Daucus carota HOM05D004009 ORTHO05D004617 1.5e-19 99.4 115 51.3
Nn3g21508 Nelumbo nucifera HOM05D004009 ORTHO05D004617 1.5e-19 99.4 110 50.0
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 1.5e-19 99.4 115 52.2
PGR004G0595 Punica granatum HOM05D004009 ORTHO05D004617 1.9e-19 99.0 115 51.3
THA.LOC104821727 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 1.9e-19 99.0 115 49.6
FvH4_1g25940 Fragaria vesca HOM05D004009 ORTHO05D004617 2.5e-19 98.6 115 50.4
FAN19G2016 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.5e-19 98.6 115 50.4
FAN26G3151 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.5e-19 98.6 115 50.4
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 2.5e-19 98.6 115 51.3
RcHm_v2.0_Chr6g0270961 Rosa chinensis HOM05D004009 ORTHO05D004617 2.5e-19 98.6 115 50.4
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 3.3e-19 98.2 115 50.4
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 3.3e-19 98.2 115 50.4
ECA236G1235 Erigeron canadensis HOM05D004009 ORTHO05D004617 3.3e-19 98.2 119 48.7
Eucgr.F00290 Eucalyptus grandis HOM05D004009 ORTHO05D004617 3.3e-19 98.2 115 50.4
Gohir.D08G225500 Gossypium hirsutum HOM05D004009 ORTHO05D004617 3.3e-19 98.2 115 49.6
Gorai.004G239500 Gossypium raimondii HOM05D004009 ORTHO05D004617 3.3e-19 98.2 115 49.6
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 3.3e-19 98.2 115 49.6
CDE01G0501 Ceratophyllum demersum HOM05D004009 ORTHO05D004617 4.3e-19 97.8 115 50.4
Phvul.008G286800 Phaseolus vulgaris HOM05D004009 ORTHO05D004617 4.3e-19 97.8 115 50.4
Sc16g0008790 Simmondsia chinensis HOM05D004009 ORTHO05D004617 4.3e-19 97.8 115 47.8
MELO3C024644.2 Cucumis melo HOM05D004009 ORTHO05D004617 5.7e-19 97.4 115 50.4
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 5.7e-19 97.4 115 49.6
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 5.7e-19 97.4 115 52.2
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 5.7e-19 97.4 115 49.6
Aqoxy5G00760 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 7.4e-19 97.1 115 48.7
CAN.G177.17 Capsicum annuum HOM05D004009 ORTHO05D004617 7.4e-19 97.1 119 46.2
Atru.chr2.80 Acer truncatum HOM05D004009 ORTHO05D004617 9.7e-19 96.7 115 48.7
Rhsim05G0137900 Rhododendron simsii HOM05D004009 ORTHO05D004617 9.7e-19 96.7 115 50.4
Medtr1g114200 Medicago truncatula HOM05D004009 ORTHO05D004617 1.6e-18 95.9 115 47.0
Os01g0256600 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 2.2e-18 95.5 115 47.0
THA.LOC104818726 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 2.2e-18 95.5 115 48.7
Zm00001eb053740 Zea mays HOM05D004009 ORTHO05D004617 2.2e-18 95.5 115 48.7
Nitab4.5_0004010g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 2.8e-18 95.1 119 45.4
Dinv30825 Davidia involucrata HOM05D002144 ORTHO05D004617 3.7e-18 94.7 52 86.5
FAN28G1886 Fragaria x ananassa HOM05D004009 ORTHO05D004617 3.7e-18 94.7 115 48.7
MBI18_g06039_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 3.7e-18 94.7 109 49.5
unitig_744.g24181 Utricularia gibba HOM05D004009 ORTHO05D004617 3.7e-18 94.7 119 45.4
vmacro19695 Vaccinium macrocarpon HOM05D004009 ORTHO05D004617 3.7e-18 94.7 113 48.7
ClCG11G000240 Citrullus lanatus HOM05D004009 ORTHO05D004617 4.8e-18 94.4 115 47.0
Peaxi162Scf00154g00518 Petunia axillaris HOM05D004009 ORTHO05D004617 4.8e-18 94.4 119 45.4
unitig_21.g20690 Utricularia gibba HOM05D004009 ORTHO05D004617 4.8e-18 94.4 119 45.4
Eucgr.F00288 Eucalyptus grandis HOM05D004009 ORTHO05D004617 6.3e-18 94.0 116 51.7
FAN10G0557 Fragaria x ananassa HOM05D004009 ORTHO05D004617 6.3e-18 94.0 115 48.7
Nitab4.5_0000726g0020 Nicotiana tabacum HOM05D004009 ORTHO05D004617 8.2e-18 93.6 118 44.9
Nitab4.5_0004323g0030 Nicotiana tabacum HOM05D004009 ORTHO05D004617 8.2e-18 93.6 119 45.4
HanXRQChr11g0320811 Helianthus annuus HOM05D004009 ORTHO05D004617 1.1e-17 93.2 119 46.2
Aa31LG11G9540 Aethionema arabicum HOM05D004009 ORTHO05D004617 1.4e-17 92.8 115 47.8
SalBow6G1513 Salvia bowleyana HOM05D004009 ORTHO05D004617 1.4e-17 92.8 119 43.7
Sopen07g023940 Solanum pennellii HOM05D004009 ORTHO05D004617 1.4e-17 92.8 119 44.5
AL6G39120 Arabidopsis lyrata HOM05D004009 ORTHO05D004617 1.8e-17 92.4 115 47.0
A06p37330 Brassica napus HOM05D004009 ORTHO05D004617 1.8e-17 92.4 115 46.1
C07p41140 Brassica napus HOM05D004009 ORTHO05D004617 1.8e-17 92.4 115 46.1
BolC7t44642H Brassica oleracea HOM05D004009 ORTHO05D004617 1.8e-17 92.4 115 46.1
BraA06t26655Z Brassica rapa HOM05D004009 ORTHO05D004617 1.8e-17 92.4 115 46.1
Ciclev10033184m.g Citrus clementina HOM05D004009 ORTHO05D004617 1.8e-17 92.4 54 81.5
PGSC0003DMG400017402 Solanum tuberosum HOM05D004009 ORTHO05D004617 1.8e-17 92.4 119 43.7
Migut.J01649 Erythranthe guttata HOM05D004009 ORTHO05D004617 2.4e-17 92.0 117 46.2
Eucgr.F00523 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.4e-17 92.0 97 53.6
Peaxi162Scf00131g00006 Petunia axillaris HOM05D004009 ORTHO05D004617 2.4e-17 92.0 119 45.4
Prupe.2G141100 Prunus persica HOM05D004009 ORTHO05D004617 2.4e-17 92.0 111 48.6
Sp1g06410 Schrenkiella parvula HOM05D004009 ORTHO05D004617 2.4e-17 92.0 115 46.1
BcaC04g23644 Brassica carinata HOM05D004009 ORTHO05D004617 3.1e-17 91.7 103 48.5
C02p58320 Brassica napus HOM05D004009 ORTHO05D004617 3.1e-17 91.7 115 47.0
AUR62039989 Chenopodium quinoa HOM05D004009 ORTHO05D004617 3.1e-17 91.7 115 47.0
Thhalv10005162m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 3.1e-17 91.7 115 45.2
HanXRQChr03g0090821 Helianthus annuus HOM05D004009 ORTHO05D004617 3.1e-17 91.7 120 47.5
BcaB04g19687 Brassica carinata HOM05D004009 ORTHO05D004617 4.1e-17 91.3 115 45.2
BraA02t08853Z Brassica rapa HOM05D004009 ORTHO05D004617 4.1e-17 91.3 115 46.1
MBI14_g17350_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 4.1e-17 91.3 115 45.2
BcaNung04749 Brassica carinata HOM05D004009 ORTHO05D004617 5.3e-17 90.9 115 45.2
A02p38770 Brassica napus HOM05D004009 ORTHO05D004617 5.3e-17 90.9 115 46.1
COL.COLO4_00089 Corchorus olitorius HOM05D004009 ORTHO05D004617 5.3e-17 90.9 54 85.2
COL.COLO4_10533 Corchorus olitorius HOM05D004009 ORTHO05D004617 5.3e-17 90.9 54 85.2
Os03g0694800 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 5.3e-17 90.9 115 46.1
Carub.0006s2476 Capsella rubella HOM05D004009 ORTHO05D004617 6.9e-17 90.5 115 44.3
Lalb_Chr04g0247211 Lupinus albus HOM05D004009 ORTHO05D004617 6.9e-17 90.5 115 45.2
Prupe.6G319700 Prunus persica HOM05D004009 ORTHO05D004617 6.9e-17 90.5 111 48.6
AT5G27820 Arabidopsis thaliana HOM05D004009 ORTHO05D004617 9.0e-17 90.1 115 45.2
BolC2t11896H Brassica oleracea HOM05D004009 ORTHO05D004617 1.2e-16 89.7 115 45.2
Sp2g20940 Schrenkiella parvula HOM05D004009 ORTHO05D004617 1.2e-16 89.7 115 45.2
BcaB07g34204 Brassica carinata HOM05D004009 ORTHO05D004617 2.0e-16 89.0 115 44.3
BcaC03g17808 Brassica carinata HOM05D004009 ORTHO05D004617 2.0e-16 89.0 115 46.1
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 2.0e-16 89.0 115 46.1
Lsat_1_v5_gn_5_65061 Lactuca sativa HOM05D004009 ORTHO05D004617 3.4e-16 88.2 65 70.8
Thhalv10000673m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 7.7e-16 87.0 54 74.1
Lsat_1_v5_gn_7_71720 Lactuca sativa HOM05D004009 ORTHO05D004617 1.7e-15 85.9 64 68.8
MD04G1198900 Malus domestica HOM05D004009 ORTHO05D004617 1.7e-15 85.9 54 79.6
MD12G1212100 Malus domestica HOM05D004009 ORTHO05D004617 1.7e-15 85.9 54 79.6
Nitab4.5_0010629g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 1.7e-15 85.9 116 43.1
SEGI_15227 Sequoiadendron giganteum HOM05D004009 ORTHO05D004617 2.9e-15 85.1 104 46.2
HanXRQChr11g0339871 Helianthus annuus HOM05D004009 ORTHO05D004617 3.8e-15 84.7 54 75.9
FAN03G2789 Fragaria x ananassa HOM05D004009 ORTHO05D004617 5.0e-15 84.3 54 77.8
Eucgr.F00513 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.1e-14 83.2 114 47.4
Eucgr.K01592 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.4e-14 82.8 109 47.7
MBI14_g39769_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 1.4e-14 82.8 49 79.6
Rhsim07G0190600 Rhododendron simsii HOM05D004009 ORTHO05D004617 1.4e-14 82.8 48 85.4
Solyc07g045390.3 Solanum lycopersicum HOM05D004009 ORTHO05D004617 1.4e-14 82.8 54 74.1
TAR365G0762 Trochodendron aralioides HOM05D004009 ORTHO05D004617 3.2e-14 81.6 98 50.0
Eucgr.F00518 Eucalyptus grandis HOM05D004009 ORTHO05D004617 5.5e-14 80.9 102 47.1
SHI18095 Sapria himalayana HOM05D004009 ORTHO05D004617 5.5e-14 80.9 54 70.4
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.2e-13 79.7 53 69.8
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 1.2e-13 79.7 53 69.8
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 3.6e-13 78.2 53 67.9
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 4.6e-13 77.8 49 73.5
Eucgr.F00510 Eucalyptus grandis HOM05D004009 ORTHO05D004617 4.6e-13 77.8 102 46.1
FAN09G2085 Fragaria x ananassa HOM05D004009 ORTHO05D004617 4.6e-13 77.8 53 75.5
FAN23G0674 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.4e-12 76.3 49 77.6
PGR119G0770 Punica granatum HOM05D004009 ORTHO05D004617 2.3e-12 75.5 106 44.3
Mapoly0031s0031 Marchantia polymorpha HOM05D004009 ORTHO05D004617 5.1e-12 74.3 54 66.7
EL10Ac5g12451 Beta vulgaris HOM05D004009 ORTHO05D004617 8.8e-12 73.6 96 45.8
Eucgr.F00521 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.0e-11 72.4 102 45.1
AagrBONN_evm.TU.Sc2ySwM_368.1872 Anthoceros agrestis HOM05D004009 ORTHO05D004617 5.7e-11 70.9 58 60.3
Pp3c1_22820 Physcomitrium patens HOM05D004009 ORTHO05D004617 1.8e-09 65.9 54 57.4
CARHR186300 Cardamine hirsuta HOM05D004009 ORTHO05D004617 5.3e-09 64.3 97 39.2
LjContig00081g0003615 Lotus japonicus HOM05D003043 ORTHO05D004617 5.3e-09 64.3 38 81.6
SMO352G0027 Selaginella moellendorffii HOM05D004009 ORTHO05D004617 2.6e-08 62.0 55 54.5
FAN02G3567 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.9e-07 58.5 39 76.9


User provided reference genes

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