Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025559 Camellia sinensis var. sinensis HOM05D001089 ORTHO05D000920 6.4e-55 217.2 115 100.0
CSS0000980 Camellia sinensis var. sinensis HOM05D001089 ORTHO05D000920 2.4e-54 215.3 115 99.1
CSS0037744 Camellia sinensis var. sinensis HOM05D001089 ORTHO05D000920 8.1e-42 173.7 115 81.7
GSVIVG01026493001 Vitis vinifera HOM05D001089 ORTHO05D000920 2.7e-29 132.1 113 62.8
Dinv24348 Davidia involucrata HOM05D001089 ORTHO05D000920 1.0e-28 130.2 100 69.0
Dinv00316 Davidia involucrata HOM05D001089 ORTHO05D000920 1.8e-28 129.4 104 68.3
Dinv06074 Davidia involucrata HOM05D001089 ORTHO05D000920 1.8e-28 129.4 104 68.3
Actinidia06627 Actinidia chinensis HOM05D001089 ORTHO05D000920 1.5e-27 126.3 109 64.2
Hma1.2p1_0476F.1_g160890 Hydrangea macrophylla HOM05D001089 ORTHO05D000920 2.5e-27 125.6 108 60.2
DCAR_001343 Daucus carota HOM05D001089 ORTHO05D000920 4.8e-26 121.3 101 61.4
PGSC0003DMG400028664 Solanum tuberosum HOM05D001089 ORTHO05D000920 8.2e-26 120.6 99 62.6
Migut.H00726 Erythranthe guttata HOM05D001089 ORTHO05D000920 1.4e-25 119.8 107 59.8
Solyc11g005950.2 Solanum lycopersicum HOM05D001089 ORTHO05D000920 3.1e-25 118.6 99 61.6
Sopen11g001890 Solanum pennellii HOM05D001089 ORTHO05D000920 1.2e-24 116.7 99 60.6
SalBow1G1293 Salvia bowleyana HOM05D001089 ORTHO05D000920 1.5e-24 116.3 106 57.5
Rhsim08G0003000 Rhododendron simsii HOM05D001089 ORTHO05D000920 2.0e-24 115.9 100 62.0
Haze_25224 Corylus avellana HOM05D001089 ORTHO05D000920 3.4e-24 115.2 113 56.6
Lj2A605T66 Lonicera japonica HOM05D001089 ORTHO05D000920 7.6e-24 114.0 114 57.9
TAR625G0745 Trochodendron aralioides HOM05D001089 ORTHO05D000920 7.6e-24 114.0 109 56.0
CiPaw.03G122500 Carya illinoinensis HOM05D001089 ORTHO05D000920 2.9e-23 112.1 111 55.0
QL06p028744 Quercus lobata HOM05D001089 ORTHO05D000920 6.5e-23 110.9 123 54.5
Hund07258 Selenicereus undatus HOM05D001089 ORTHO05D000920 6.5e-23 110.9 98 59.2
vmacro18665 Vaccinium macrocarpon HOM05D001089 ORTHO05D000920 6.5e-23 110.9 92 62.0
Eucgr.I00209 Eucalyptus grandis HOM05D001089 ORTHO05D000920 1.4e-22 109.8 116 54.3
Nitab4.5_0000856g0030 Nicotiana tabacum HOM05D001089 ORTHO05D000920 1.4e-22 109.8 99 57.6
TAR381G1408 Trochodendron aralioides HOM05D001089 ORTHO05D000920 1.4e-22 109.8 110 55.5
MSTRG.2658 Avicennia marina HOM05D001089 ORTHO05D000920 1.9e-22 109.4 113 52.2
CiPaw.04G082900 Carya illinoinensis HOM05D001089 ORTHO05D000920 1.9e-22 109.4 113 55.8
SGA_v2.0_scaffold370G50128 Striga asiatica HOM05D001089 ORTHO05D000920 1.9e-22 109.4 102 57.8
Aqoxy6G00353 Aquilegia oxysepala HOM05D001089 ORTHO05D000920 2.5e-22 109.0 109 52.3
FAN23G0235 Fragaria x ananassa HOM05D001089 ORTHO05D000920 2.5e-22 109.0 106 56.6
FAN23G1912 Fragaria x ananassa HOM05D001089 ORTHO05D000920 2.5e-22 109.0 106 56.6
Nn1g06255 Nelumbo nucifera HOM05D001089 ORTHO05D000920 3.2e-22 108.6 105 55.2
Nn5g28573 Nelumbo nucifera HOM05D001089 ORTHO05D000920 3.2e-22 108.6 94 61.7
CAN.G652.10 Capsicum annuum HOM05D001089 ORTHO05D000920 5.5e-22 107.8 105 55.2
Psat0s145g0080 Pisum sativum HOM05D001089 ORTHO05D000920 7.2e-22 107.5 110 54.5
FAN19G0489 Fragaria x ananassa HOM05D001089 ORTHO05D000920 9.3e-22 107.1 106 55.7
Peaxi162Scf00589g00417 Petunia axillaris HOM05D001089 ORTHO05D000920 9.3e-22 107.1 107 53.3
FAN26G1131 Fragaria x ananassa HOM05D001089 ORTHO05D000920 1.2e-21 106.7 105 55.2
MD15G1343000 Malus domestica HOM05D001089 ORTHO05D000920 1.2e-21 106.7 95 55.8
FvH4_1g24270 Fragaria vesca HOM05D001089 ORTHO05D000920 1.6e-21 106.3 100 58.0
Sed0015585 Sechium edule HOM05D001089 ORTHO05D000920 1.6e-21 106.3 101 57.4
CANSAT01G2678 Cannabis sativa HOM05D001089 ORTHO05D000920 2.7e-21 105.5 111 52.3
Oeu047693.2 Olea europaea HOM05D001089 ORTHO05D000920 2.7e-21 105.5 113 54.9
Medtr3g096160 Medicago truncatula HOM05D001089 ORTHO05D000920 3.5e-21 105.1 96 56.2
RcHm_v2.0_Chr2g0120761 Rosa chinensis HOM05D001089 ORTHO05D000920 3.5e-21 105.1 120 53.3
ClCG01G015410 Citrullus lanatus HOM05D001089 ORTHO05D000920 4.6e-21 104.8 101 56.4
Cc07_g18410 Coffea canephora HOM05D001089 ORTHO05D000920 4.6e-21 104.8 108 52.8
Sabra05G0050400 Salix brachista HOM05D001089 ORTHO05D000920 4.6e-21 104.8 125 49.6
MSTRG.23450 Avicennia marina HOM05D001089 ORTHO05D000920 6.1e-21 104.4 94 59.6
Ca_16942_v3 Cicer arietinum L. HOM05D001089 ORTHO05D000920 6.1e-21 104.4 98 54.1
Ca_16961_v3 Cicer arietinum L. HOM05D001089 ORTHO05D000920 6.1e-21 104.4 98 54.1
CsaV3_6G041630 Cucumis sativus L. HOM05D001089 ORTHO05D000920 6.1e-21 104.4 97 59.8
MELO3C008057.2 Cucumis melo HOM05D001089 ORTHO05D000920 1.0e-20 103.6 97 58.8
Oeu037815.1 Olea europaea HOM05D001089 ORTHO05D000920 1.0e-20 103.6 111 54.1
Duzib187G1565 Durio zibethinus HOM05D001089 ORTHO05D000920 2.3e-20 102.4 100 57.0
FAN28G1888 Fragaria x ananassa HOM05D001089 ORTHO05D000920 2.3e-20 102.4 101 56.4
Lj1g0012030 Lotus japonicus HOM05D001089 ORTHO05D000920 2.3e-20 102.4 93 54.8
Thecc.01G131000 Theobroma cacao HOM05D001089 ORTHO05D000920 2.3e-20 102.4 99 55.6
Sabra07G0089400 Salix brachista HOM05D001089 ORTHO05D000920 3.9e-20 101.7 121 47.9
arahy.Tifrunner.gnm1.ann1.8KPX0U Arachis hypogaea HOM05D001089 ORTHO05D000920 6.7e-20 100.9 100 52.0
Manes.12G154700 Manihot esculenta HOM05D001089 ORTHO05D000920 6.7e-20 100.9 101 52.5
Manes.13G083500 Manihot esculenta HOM05D001089 ORTHO05D000920 6.7e-20 100.9 115 47.8
arahy.Tifrunner.gnm1.ann1.DVCH10 Arachis hypogaea HOM05D001089 ORTHO05D000920 8.7e-20 100.5 100 51.0
TWI75G1424 Tripterygium wilfordii HOM05D001089 ORTHO05D000920 8.7e-20 100.5 92 57.6
Potri.007G109300 Populus trichocarpa HOM05D001089 ORTHO05D000920 1.1e-19 100.1 107 48.6
TWI79G0009 Tripterygium wilfordii HOM05D001089 ORTHO05D000920 1.1e-19 100.1 114 50.9
PSO675G2547 Papaver somniferum HOM05D001089 ORTHO05D000920 1.5e-19 99.8 109 52.3
Potri.005G058700 Populus trichocarpa HOM05D001089 ORTHO05D000920 2.5e-19 99.0 125 48.0
Duzib264G1113 Durio zibethinus HOM05D001089 ORTHO05D000920 3.3e-19 98.6 95 57.9
PSO541G3549 Papaver somniferum HOM05D001089 ORTHO05D000920 3.3e-19 98.6 112 50.9
PGR079G0003 Punica granatum HOM05D001089 ORTHO05D000920 3.3e-19 98.6 96 55.2
PGR119G0584 Punica granatum HOM05D001089 ORTHO05D000920 3.3e-19 98.6 96 55.2
Cpa.g.sc42.147 Carica papaya HOM05D001089 ORTHO05D000920 4.3e-19 98.2 111 48.6
AUR62000494 Chenopodium quinoa HOM05D001089 ORTHO05D000920 5.7e-19 97.8 116 50.9
SGA_v2.0_scaffold289G47265 Striga asiatica HOM05D001089 ORTHO05D000920 5.7e-19 97.8 108 50.0
arahy.Tifrunner.gnm1.ann1.0Z2KWF Arachis hypogaea HOM05D001089 ORTHO05D000920 2.2e-18 95.9 116 50.0
arahy.Tifrunner.gnm1.ann1.1K4FZB Arachis hypogaea HOM05D001089 ORTHO05D000920 2.8e-18 95.5 116 49.1
Lalb_Chr12g0203151 Lupinus albus HOM05D001089 ORTHO05D000920 3.7e-18 95.1 103 50.5
AUR62006839 Chenopodium quinoa HOM05D001089 ORTHO05D000920 4.8e-18 94.7 116 49.1
Ciclev10000740m.g Citrus clementina HOM05D001089 ORTHO05D000920 6.3e-18 94.4 109 51.4
Glyma.04G213200 Glycine max HOM05D001089 ORTHO05D000920 6.3e-18 94.4 93 51.6
Lalb_Chr13g0296591 Lupinus albus HOM05D001089 ORTHO05D000920 1.8e-17 92.8 97 53.6
EL10Ac4g09595 Beta vulgaris HOM05D001089 ORTHO05D000920 3.1e-17 92.0 112 50.0
COL.COLO4_35730 Corchorus olitorius HOM05D001089 ORTHO05D000920 9.0e-17 90.5 92 54.3
Sopen04g023170 Solanum pennellii HOM05D002118 ORTHO05D002356 9.0e-17 90.5 84 54.8
Glyma.06G153000 Glycine max HOM05D001089 ORTHO05D000920 2.6e-16 89.0 97 52.6
Gohir.A05G385500 Gossypium hirsutum HOM05D001089 ORTHO05D000920 2.6e-16 89.0 109 51.4
Phvul.009G150200 Phaseolus vulgaris HOM05D001089 ORTHO05D000920 2.6e-16 89.0 95 52.6
unitig_736.g22682 Utricularia gibba HOM05D001089 ORTHO05D000920 3.4e-16 88.6 92 51.1
Gohir.D04G022700 Gossypium hirsutum HOM05D001089 ORTHO05D000920 4.5e-16 88.2 109 51.4
Gorai.012G034300 Gossypium raimondii HOM05D001089 ORTHO05D000920 4.5e-16 88.2 109 51.4
VMungo1309G0318 Vigna mungo HOM05D001089 ORTHO05D000920 4.5e-16 88.2 95 52.6
Carub.0003s2818 Capsella rubella HOM05D001089 ORTHO05D000920 5.9e-16 87.8 95 51.6
unitig_899.g14693 Utricularia gibba HOM05D001089 ORTHO05D000920 2.9e-15 85.5 92 50.0
BcaB03g16217 Brassica carinata HOM05D001089 ORTHO05D000920 6.5e-15 84.3 116 44.8
Aa31LG8G12340 Aethionema arabicum HOM05D001089 ORTHO05D000920 2.5e-14 82.4 114 46.5
AL3G45550 Arabidopsis lyrata HOM05D001089 ORTHO05D000920 2.5e-14 82.4 96 46.9
Ah.06g190850 Amaranthus hybridus HOM05D001089 ORTHO05D000920 7.2e-14 80.9 107 47.7
Phvul.002G271800 Phaseolus vulgaris HOM05D001089 ORTHO05D000920 9.4e-14 80.5 115 44.3
Thhalv10022633m.g Eutrema salsugineum HOM05D001089 ORTHO05D000920 1.6e-13 79.7 94 45.7
Glyma.05G191400 Glycine max HOM05D001089 ORTHO05D000920 2.1e-13 79.3 111 44.1
AT2G13690 Arabidopsis thaliana HOM05D001089 ORTHO05D000920 3.6e-13 78.6 99 45.5
THA.LOC104807158 Tarenaya hassleriana HOM05D001089 ORTHO05D000920 3.6e-13 78.6 102 45.1
CARHR104740 Cardamine hirsuta HOM05D001089 ORTHO05D000920 4.6e-13 78.2 94 46.8
VMungo0251G1012 Vigna mungo HOM05D001089 ORTHO05D000920 6.1e-13 77.8 93 47.3
CDE08G0610 Ceratophyllum demersum HOM05D001089 ORTHO05D000920 1.4e-12 76.6 92 45.7
Sp3g27080 Schrenkiella parvula HOM05D001089 ORTHO05D000920 5.7e-11 71.2 115 40.9
C07p09160 Brassica napus HOM05D001089 ORTHO05D000920 7.4e-11 70.9 94 40.4
BolC7t41328H Brassica oleracea HOM05D001089 ORTHO05D000920 7.4e-11 70.9 94 40.4
BcaC06g35996 Brassica carinata HOM05D001089 ORTHO05D000920 1.4e-06 56.6 71 43.7
Zm00001eb304710 Zea mays HOM05D001089 ORTHO05D000920 3.2e-06 55.5 107 34.6
ATR1136G097 Amborella trichopoda HOM05D001089 ORTHO05D000920 7.2e-06 54.3 94 30.9
Os04g0278000 Oryza sativa ssp. japonica HOM05D001089 ORTHO05D000920 7.2e-06 54.3 101 32.7


User provided reference genes

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