Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 7.7e-138 493.8 250 100.0
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 3.1e-78 295.8 285 61.8
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 3.1e-78 295.8 285 61.8
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 2.5e-64 249.6 285 53.0
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 7.4e-64 248.1 274 55.1
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 6.9e-62 241.5 306 48.0
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 2.7e-58 229.6 305 47.5
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 4.6e-58 228.8 281 48.4
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 1.8e-57 226.9 291 48.5
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 6.7e-57 224.9 282 48.9
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 1.9e-56 223.4 282 49.3
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 5.7e-56 221.9 282 46.8
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 1.3e-55 220.7 282 49.3
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 1.4e-54 217.2 313 45.4
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 4.1e-54 215.7 281 48.0
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 4.1e-54 215.7 313 45.4
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 1.5e-53 213.8 282 47.2
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 1.0e-52 211.1 285 46.3
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 2.2e-52 209.9 282 47.5
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 1.1e-51 207.6 281 46.3
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 1.4e-51 207.2 310 42.9
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 1.9e-51 206.8 295 42.4
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 9.3e-51 204.5 310 42.6
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 1.2e-50 204.1 310 42.6
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 2.1e-50 203.4 310 42.9
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 6.7e-49 198.4 280 45.4
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 1.1e-48 197.6 281 43.1
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 4.3e-48 195.7 282 42.9
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 9.7e-48 194.5 275 45.5
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 1.6e-47 193.7 309 41.1
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 4.8e-47 192.2 293 41.3
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 6.3e-47 191.8 294 41.5
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 1.1e-46 191.0 281 41.6
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 1.4e-46 190.7 281 41.6
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 3.1e-46 189.5 286 44.8
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 5.3e-46 188.7 281 41.3
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 9.1e-46 188.0 293 41.0
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 1.5e-45 187.2 285 42.5
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 4.5e-45 185.7 284 42.6
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 5.9e-45 185.3 282 43.6
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 1.3e-44 184.1 311 39.9
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 2.2e-44 183.3 310 39.0
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 3.8e-44 182.6 288 41.3
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 5.0e-44 182.2 329 37.7
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 8.5e-44 181.4 298 40.3
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 8.5e-44 181.4 286 40.9
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 8.5e-44 181.4 286 40.9
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 1.9e-43 180.3 280 43.2
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 3.2e-43 179.5 275 42.2
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 4.2e-43 179.1 284 41.9
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 7.2e-43 178.3 286 41.3
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 1.6e-42 177.2 317 37.9
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 2.1e-42 176.8 279 39.4
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 2.1e-42 176.8 279 39.4
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 2.7e-42 176.4 275 40.0
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 3.6e-42 176.0 279 41.9
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 3.6e-42 176.0 285 41.4
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.0e-41 174.5 284 39.8
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 1.0e-41 174.5 285 40.4
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 5.1e-41 172.2 272 40.1
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 1.5e-40 170.6 282 38.7
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 2.0e-40 170.2 302 38.7
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 2.6e-40 169.9 274 39.4
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 2.6e-40 169.9 278 41.0
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 5.7e-40 168.7 284 38.0
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 2.2e-39 166.8 284 39.8
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 2.2e-39 166.8 283 38.9
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 2.8e-39 166.4 214 47.7
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 4.8e-39 165.6 302 37.4
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 8.2e-39 164.9 295 38.6
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 1.4e-38 164.1 283 37.5
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 1.8e-38 163.7 282 37.9
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 6.9e-38 161.8 287 38.0
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 1.5e-37 160.6 276 38.0
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 5.9e-37 158.7 310 38.4
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 1.3e-36 157.5 230 44.3
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 1.7e-36 157.1 281 37.7
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 1.1e-35 154.5 281 37.4
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 1.1e-35 154.5 285 39.6
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 2.5e-35 153.3 283 36.0
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 4.7e-34 149.1 233 42.1
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 1.1e-32 144.4 327 35.8
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 1.1e-32 144.4 261 37.5
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 1.5e-32 144.1 276 36.6
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 2.6e-32 143.3 271 36.9
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 5.7e-32 142.1 291 35.7
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 7.4e-32 141.7 273 37.0
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 9.7e-32 141.4 163 48.5
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 1.0e-28 131.3 264 35.2
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 1.7e-28 130.6 267 34.8
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 1.7e-28 130.6 271 34.7
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 3.8e-28 129.4 268 34.3
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 6.5e-28 128.6 271 33.9
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 8.5e-28 128.3 267 34.8
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 1.9e-27 127.1 271 33.6
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 2.5e-27 126.7 271 33.9
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 2.5e-27 126.7 264 33.7
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 4.2e-27 125.9 267 35.2
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 4.2e-27 125.9 267 35.2
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 7.2e-27 125.2 281 32.0
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 9.4e-27 124.8 263 36.5
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 1.2e-26 124.4 255 35.3
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 2.7e-26 123.2 261 34.5
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 3.0e-25 119.8 146 48.6
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 5.2e-25 119.0 256 35.2
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 2.0e-24 117.1 268 33.2
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 4.4e-24 115.9 252 34.9
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 4.4e-24 115.9 252 34.9
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 1.7e-20 104.0 269 33.1
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 2.9e-20 103.2 270 33.7
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 3.8e-20 102.8 263 32.7
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 9.1e-14 81.6 158 34.8
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 1.3e-12 77.8 87 47.1
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 3.8e-12 76.3 144 36.1
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.5e-11 73.6 66 54.5
Cpa.g.sc15.139 Carica papaya HOM05D004670 ORTHO05D022223 3.6e-10 69.7 136 36.0
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 6.1e-10 68.9 128 37.5
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 6.1e-10 68.9 128 37.5
Medtr3g108743 Medicago truncatula HOM05D030372 ORTHO05D025854 4.0e-09 66.2 68 48.5
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 1.5e-08 64.3 62 50.0
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 1.5e-08 64.3 185 31.9
Zm00001eb373330 Zea mays HOM05D000424 ORTHO05D000355 7.5e-08 62.0 221 23.5
QL02p015096 Quercus lobata HOM05D006218 ORTHO05D007338 9.8e-08 61.6 223 22.9
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 1.3e-07 61.2 60 50.0
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 1.3e-07 61.2 304 25.7
Psat5g293680 Pisum sativum HOM05D006218 ORTHO05D007338 1.7e-07 60.8 243 23.9
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 1.7e-07 60.8 159 36.5
ECA238G2420 Erigeron canadensis HOM05D006596 ORTHO05D008497 2.2e-07 60.5 251 26.7
Ca_09603_v3 Cicer arietinum L. HOM05D004670 ORTHO05D014137 4.9e-07 59.3 98 41.8
Thhalv10003177m.g Eutrema salsugineum HOM05D006218 ORTHO05D007338 4.9e-07 59.3 233 21.0
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 1.4e-06 57.8 87 40.2
MSTRG.22731 Avicennia marina HOM05D000424 ORTHO05D000355 4.1e-06 56.2 220 26.4
Cpa.g.sc103.102 Carica papaya HOM05D007937 ORTHO05D010000 4.1e-06 56.2 231 25.1
Medtr5g095780 Medicago truncatula HOM05D004670 ORTHO05D008020 5.4e-06 55.8 59 45.8


User provided reference genes

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