Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.8e-79 298.5 149 100.0
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 4.7e-42 174.9 150 61.3
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 1.2e-40 170.2 166 54.8
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 4.6e-37 158.3 159 56.0
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 4.4e-32 141.7 153 52.9
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 7.6e-32 141.0 168 50.0
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 1.3e-31 140.2 168 49.4
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 1.7e-31 139.8 168 49.4
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.4e-30 136.7 165 46.7
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.9e-30 136.3 188 43.1
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 9.2e-30 134.0 184 42.9
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 5.1e-28 128.3 166 44.6
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.8e-26 122.5 165 46.7
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 3.6e-26 122.1 172 44.2
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 3.6e-26 122.1 130 52.3
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 4.7e-26 121.7 168 47.0
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 4.0e-25 118.6 167 42.5
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 2.0e-24 116.3 165 43.6
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 2.6e-24 115.9 165 42.4
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 2.6e-24 115.9 165 42.4
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 5.8e-24 114.8 165 44.2
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 7.6e-24 114.4 165 43.6
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 1.7e-23 113.2 165 41.8
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 2.2e-23 112.8 165 43.0
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 4.9e-23 111.7 166 40.4
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 4.9e-23 111.7 165 41.8
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 6.4e-23 111.3 165 42.4
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 8.4e-23 110.9 165 41.8
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 1.1e-22 110.5 165 38.8
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.1e-22 110.5 165 40.6
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 1.1e-22 110.5 165 40.6
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 1.4e-22 110.2 165 43.0
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 1.9e-22 109.8 165 42.4
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 2.4e-22 109.4 165 42.4
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 2.4e-22 109.4 165 40.6
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 2.4e-22 109.4 165 40.6
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 2.4e-22 109.4 150 40.0
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 3.2e-22 109.0 165 41.2
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 4.2e-22 108.6 171 40.9
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 4.2e-22 108.6 171 40.9
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 7.1e-22 107.8 165 41.8
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 7.1e-22 107.8 165 40.6
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 1.2e-21 107.1 165 40.0
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 1.2e-21 107.1 165 40.6
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.6e-21 106.7 165 40.6
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 2.1e-21 106.3 165 40.0
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 2.1e-21 106.3 165 41.2
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.7e-21 105.9 165 40.0
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 2.7e-21 105.9 165 39.4
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 2.7e-21 105.9 165 39.4
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 3.5e-21 105.5 167 38.3
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 4.6e-21 105.1 165 39.4
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 4.6e-21 105.1 165 38.2
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 4.6e-21 105.1 165 38.8
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 4.6e-21 105.1 238 34.0
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 6.0e-21 104.8 165 39.4
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 6.0e-21 104.8 165 38.8
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 6.0e-21 104.8 165 39.4
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 7.8e-21 104.4 165 41.2
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 1.0e-20 104.0 165 39.4
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 1.0e-20 104.0 168 38.1
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 1.7e-20 103.2 165 39.4
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 1.7e-20 103.2 167 40.1
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.7e-20 103.2 165 37.6
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 1.7e-20 103.2 165 38.8
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 1.7e-20 103.2 155 40.0
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 3.0e-20 102.4 165 38.8
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 3.9e-20 102.1 165 41.2
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 3.9e-20 102.1 165 40.6
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 5.1e-20 101.7 167 38.9
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 1.1e-19 100.5 165 40.0
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 1.1e-19 100.5 123 48.0
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 1.1e-19 100.5 165 39.4
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.1e-19 100.5 165 38.8
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 1.1e-19 100.5 165 38.8
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 1.1e-19 100.5 165 37.0
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.5e-19 100.1 165 38.8
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 1.5e-19 100.1 165 40.0
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 1.9e-19 99.8 182 37.4
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 2.5e-19 99.4 167 38.9
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 2.5e-19 99.4 167 39.5
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 3.3e-19 99.0 167 39.5
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 4.3e-19 98.6 167 38.3
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 5.6e-19 98.2 134 44.8
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 5.6e-19 98.2 165 38.2
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 5.6e-19 98.2 113 49.6
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 5.6e-19 98.2 165 38.8
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 7.3e-19 97.8 154 40.9
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 7.3e-19 97.8 165 37.6
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.3e-18 97.1 150 40.7
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 1.6e-18 96.7 167 38.3
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 2.1e-18 96.3 165 37.0
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 2.8e-18 95.9 167 38.3
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 2.8e-18 95.9 197 36.0
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 1.1e-17 94.0 165 37.6
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 1.1e-17 94.0 167 37.7
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.8e-17 93.2 104 51.9
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 6.9e-17 91.3 165 37.6
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 6.9e-17 91.3 165 37.0
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 9.0e-17 90.9 110 50.0
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 1.2e-16 90.5 165 36.4
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 7.6e-16 87.8 165 35.8
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 1.7e-15 86.7 144 37.5
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 1.1e-14 84.0 165 34.5
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 1.1e-14 84.0 165 33.9
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 1.9e-14 83.2 104 43.3
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 9.3e-14 80.9 104 40.4
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 1.2e-13 80.5 74 59.5
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 2.1e-13 79.7 134 37.3
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.0e-12 75.9 86 45.3
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 1.5e-11 73.6 183 33.3
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 9.6e-11 70.9 83 44.6
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 1.3e-10 70.5 104 38.5
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 4.8e-10 68.6 165 31.5
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 6.2e-10 68.2 86 39.5
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 8.1e-10 67.8 84 40.5
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 8.1e-10 67.8 84 40.5
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 1.4e-09 67.0 104 40.4
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 3.1e-09 65.9 82 45.1
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.4e-08 62.4 104 36.5
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 4.5e-08 62.0 82 40.2
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.3e-07 60.5 41 68.3
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 3.8e-07 58.9 41 63.4
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.1e-06 57.4 41 63.4


User provided reference genes

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