Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025541 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 1.5e-212 742.7 382 100.0
Actinidia24004 Actinidia chinensis HOM05D006342 ORTHO05D008155 2.5e-156 555.8 394 75.6
Rhsim11G0137800 Rhododendron simsii HOM05D006342 ORTHO05D008155 6.4e-152 541.2 412 72.6
RhsimUnG0187900 Rhododendron simsii HOM05D006342 ORTHO05D008155 3.2e-151 538.9 412 72.3
Lj9A350G66 Lonicera japonica HOM05D006342 ORTHO05D008155 3.1e-138 495.7 365 75.1
QL11p022820 Quercus lobata HOM05D006342 ORTHO05D008155 4.5e-137 491.9 390 67.9
Dinv24174 Davidia involucrata HOM05D006342 ORTHO05D008155 2.9e-136 489.2 333 76.6
Hma1.2p1_0522F.1_g171800 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 3.8e-136 488.8 346 74.6
CAN.G523.45 Capsicum annuum HOM05D006342 ORTHO05D008155 5.0e-136 488.4 316 78.8
Nitab4.5_0000863g0140 Nicotiana tabacum HOM05D006342 ORTHO05D008155 5.0e-136 488.4 389 68.6
Sopen01g047960 Solanum pennellii HOM05D006342 ORTHO05D008155 9.3e-135 484.2 397 68.3
Peaxi162Scf01060g00128 Petunia axillaris HOM05D006342 ORTHO05D008155 1.6e-134 483.4 316 78.5
Nn5g30026 Nelumbo nucifera HOM05D006342 ORTHO05D008155 6.1e-134 481.5 317 79.5
Ciclev10028615m.g Citrus clementina HOM05D006342 ORTHO05D008155 6.7e-133 478.0 350 72.0
Nitab4.5_0003959g0010 Nicotiana tabacum HOM05D006342 ORTHO05D008155 2.5e-132 476.1 338 74.6
PGSC0003DMG400012575 Solanum tuberosum HOM05D006342 ORTHO05D008155 2.5e-132 476.1 325 76.9
Psat7g100320 Pisum sativum HOM05D006342 ORTHO05D008155 3.3e-132 475.7 394 65.0
Oeu042410.2 Olea europaea HOM05D006342 ORTHO05D008155 5.7e-132 474.9 318 75.8
Prupe.8G064500 Prunus persica HOM05D006342 ORTHO05D008155 7.4e-132 474.6 392 66.8
CANSAT21G1086 Cannabis sativa HOM05D006342 ORTHO05D008155 8.2e-131 471.1 388 65.5
ECA234G3624 Erigeron canadensis HOM05D006342 ORTHO05D008155 8.2e-131 471.1 356 69.1
DCAR_003711 Daucus carota HOM05D006342 ORTHO05D008155 1.4e-130 470.3 356 69.1
Gorai.005G222500 Gossypium raimondii HOM05D006342 ORTHO05D008155 1.8e-130 469.9 308 77.9
GSVIVG01015772001 Vitis vinifera HOM05D006342 ORTHO05D008155 3.1e-130 469.2 355 72.4
TAR628G1271 Trochodendron aralioides HOM05D006342 ORTHO05D008155 4.1e-130 468.8 317 78.2
Gohir.A03G175100 Gossypium hirsutum HOM05D006342 ORTHO05D008155 1.5e-129 466.8 308 77.6
Gohir.D02G198600 Gossypium hirsutum HOM05D006342 ORTHO05D008155 2.0e-129 466.5 308 77.6
Manes.07G034700 Manihot esculenta HOM05D006342 ORTHO05D008155 2.0e-129 466.5 329 73.6
arahy.Tifrunner.gnm1.ann1.U7PRNJ Arachis hypogaea HOM05D006342 ORTHO05D008155 2.6e-129 466.1 355 68.7
Potri.017G050900 Populus trichocarpa HOM05D006342 ORTHO05D008155 3.4e-129 465.7 396 65.4
Thecc.02G134500 Theobroma cacao HOM05D006342 ORTHO05D008155 4.5e-129 465.3 333 73.6
Ca_18366_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 7.7e-129 464.5 391 65.0
Medtr4g094100 Medicago truncatula HOM05D006342 ORTHO05D008155 1.0e-128 464.2 318 74.2
Lalb_Chr05g0217591 Lupinus albus HOM05D006342 ORTHO05D008155 2.9e-128 462.6 391 64.7
Lj4g0023834 Lotus japonicus HOM05D006342 ORTHO05D008155 6.5e-128 461.5 314 73.2
Cc02_g21250 Coffea canephora HOM05D006342 ORTHO05D008155 1.9e-127 459.9 326 74.2
RcHm_v2.0_Chr2g0143381 Rosa chinensis HOM05D006342 ORTHO05D008155 7.2e-127 458.0 389 64.5
Duzib052G0010 Durio zibethinus HOM05D006342 ORTHO05D008155 1.6e-126 456.8 362 69.1
Glyma.08G070600 Glycine max HOM05D006342 ORTHO05D008155 2.7e-126 456.1 314 74.5
Atru.chr6.1184 Acer truncatum HOM05D006342 ORTHO05D008155 3.6e-126 455.7 337 71.5
CsaV3_7G006740 Cucumis sativus L. HOM05D006342 ORTHO05D008155 4.6e-126 455.3 310 76.1
HanXRQChr10g0303621 Helianthus annuus HOM05D006342 ORTHO05D008155 6.1e-126 454.9 306 75.2
PGR042G1699 Punica granatum HOM05D006342 ORTHO05D008155 1.4e-125 453.8 351 67.5
TPR.G35344 Trifolium pratense HOM05D006342 ORTHO05D008155 2.3e-125 453.0 314 72.9
Glyma.13G042800 Glycine max HOM05D006342 ORTHO05D008155 3.9e-125 452.2 314 74.2
Eucgr.G00932 Eucalyptus grandis HOM05D006342 ORTHO05D008155 5.1e-125 451.8 390 63.6
MELO3C018621.2 Cucumis melo HOM05D006342 ORTHO05D008155 1.1e-124 450.7 310 75.5
Sabra17G0037300 Salix brachista HOM05D006342 ORTHO05D008155 2.5e-124 449.5 348 67.8
Lsat_1_v5_gn_5_108680 Lactuca sativa HOM05D006342 ORTHO05D008155 4.3e-124 448.7 306 74.8
FAN02G0548 Fragaria x ananassa HOM05D006342 ORTHO05D008155 1.7e-123 446.8 342 69.3
MD10G1052500 Malus domestica HOM05D006342 ORTHO05D008155 2.2e-123 446.4 391 62.9
VMungo0251G1514 Vigna mungo HOM05D006342 ORTHO05D008155 2.2e-123 446.4 307 73.9
PSO447G0017 Papaver somniferum HOM05D006342 ORTHO05D008155 8.2e-123 444.5 333 70.0
TWI23G0792 Tripterygium wilfordii HOM05D006342 ORTHO05D008155 1.1e-122 444.1 395 63.0
CiPaw.05G033400 Carya illinoinensis HOM05D006342 ORTHO05D008155 4.1e-122 442.2 392 63.5
FvH4_6g33511 Fragaria vesca HOM05D006342 ORTHO05D008155 1.2e-121 440.7 391 61.9
Sc15g0003050 Simmondsia chinensis HOM05D006342 ORTHO05D008155 1.2e-121 440.7 339 69.6
SGA_v2.0_scaffold83G26327 Striga asiatica HOM05D006342 ORTHO05D008155 2.0e-121 439.9 305 73.1
MSTRG.16600 Avicennia marina HOM05D006342 ORTHO05D008155 3.4e-121 439.1 372 62.6
Migut.B00584 Erythranthe guttata HOM05D006342 ORTHO05D008155 2.2e-120 436.4 314 70.4
Solyc01g105460.4 Solanum lycopersicum HOM05D006342 ORTHO05D008155 3.2e-119 432.6 283 79.2
AUR62013159 Chenopodium quinoa HOM05D006342 ORTHO05D008155 4.2e-119 432.2 366 63.7
AUR62010160 Chenopodium quinoa HOM05D006342 ORTHO05D008155 7.2e-119 431.4 324 69.8
EL10Ac9g21517 Beta vulgaris HOM05D006342 ORTHO05D008155 2.1e-118 429.9 338 67.5
Carub.0002s0473 Capsella rubella HOM05D006342 ORTHO05D008155 2.7e-118 429.5 317 71.3
AL2G16000 Arabidopsis lyrata HOM05D006342 ORTHO05D008155 3.6e-118 429.1 326 70.2
vmacro01839 Vaccinium macrocarpon HOM05D006342 ORTHO05D008155 1.8e-117 426.8 460 57.0
AT1G60600 Arabidopsis thaliana HOM05D006342 ORTHO05D008155 2.3e-117 426.4 332 69.3
COL.COLO4_32304 Corchorus olitorius HOM05D006342 ORTHO05D008155 1.1e-116 424.1 318 69.8
SalBow5G5605 Salvia bowleyana HOM05D006342 ORTHO05D008155 1.1e-116 424.1 337 65.9
arahy.Tifrunner.gnm1.ann1.XZGJ82 Arachis hypogaea HOM05D006342 ORTHO05D008155 2.6e-116 422.9 330 68.2
Thhalv10023528m.g Eutrema salsugineum HOM05D006342 ORTHO05D008155 1.3e-115 420.6 314 70.1
Migut.B01155 Erythranthe guttata HOM05D006342 ORTHO05D008155 2.8e-115 419.5 316 67.1
BcaB04g20275 Brassica carinata HOM05D006342 ORTHO05D008155 4.8e-115 418.7 333 68.2
Cpa.g.sc42.26 Carica papaya HOM05D006342 ORTHO05D008155 1.4e-114 417.2 281 77.6
Aa31LG2G9860 Aethionema arabicum HOM05D006342 ORTHO05D008155 1.8e-114 416.8 314 70.7
A01p29370 Brassica napus HOM05D006342 ORTHO05D008155 2.0e-113 413.3 311 71.4
unitig_0.g609 Utricularia gibba HOM05D006342 ORTHO05D008190 2.6e-113 412.9 337 63.8
BolC1t03681H Brassica oleracea HOM05D006342 ORTHO05D008155 3.5e-113 412.5 334 67.1
Sabra17G0037900 Salix brachista HOM05D006342 ORTHO05D008155 7.7e-113 411.4 383 60.8
Sabra17G0042600 Salix brachista HOM05D006342 ORTHO05D008155 1.7e-112 410.2 402 58.7
ClCG09G015650 Citrullus lanatus HOM05D006342 ORTHO05D008155 2.2e-112 409.8 310 71.0
BcaC09g49390 Brassica carinata HOM05D006342 ORTHO05D008155 5.0e-112 408.7 334 66.8
C01p37160 Brassica napus HOM05D006342 ORTHO05D008155 5.0e-112 408.7 334 66.8
BraA01t03071Z Brassica rapa HOM05D006342 ORTHO05D008155 5.0e-112 408.7 311 70.1
THA.LOC104799883 Tarenaya hassleriana HOM05D006342 ORTHO05D008155 1.4e-109 400.6 358 62.8
MSTRG.20291 Avicennia marina HOM05D006342 ORTHO05D008155 3.0e-109 399.4 315 63.8
MBI05_g05612_MAGBIO Magnolia biondii HOM05D006342 ORTHO05D008155 8.8e-109 397.9 287 73.2
Os03g0190100 Oryza sativa ssp. japonica HOM05D006342 ORTHO05D008155 1.5e-108 397.1 323 63.8
Oeu000253.3 Olea europaea HOM05D006342 ORTHO05D008155 2.7e-102 376.3 312 64.4
Hund06370 Selenicereus undatus HOM05D006342 ORTHO05D008155 6.1e-102 375.2 287 66.6
Migut.B01157 Erythranthe guttata HOM05D006342 ORTHO05D008155 4.0e-101 372.5 305 62.3
Pp3c15_22700 Physcomitrium patens HOM05D006342 ORTHO05D008155 1.8e-98 363.6 307 60.3
HPP92_019303 Vanilla planifolia HOM05D006342 ORTHO05D008155 5.9e-97 358.6 344 58.4
PSO210G1371 Papaver somniferum HOM05D006342 ORTHO05D008155 7.7e-97 358.2 246 77.6
Mapoly0112s0045 Marchantia polymorpha HOM05D006342 ORTHO05D008155 2.2e-96 356.7 307 59.6
Zm00001eb006830 Zea mays HOM05D006342 ORTHO05D008155 8.5e-96 354.8 350 56.3
FAN09G1871 Fragaria x ananassa HOM05D006342 ORTHO05D003187 1.1e-95 354.4 327 60.9
SMO364G0259 Selaginella moellendorffii HOM05D006342 ORTHO05D008155 2.2e-91 340.1 281 62.6
Phvul.002G210750 Phaseolus vulgaris HOM05D006342 ORTHO05D008155 2.3e-88 330.1 217 75.6
Sed0004067 Sechium edule HOM05D006342 ORTHO05D008155 1.6e-86 323.9 223 74.4
Hma1.2p1_0522F.1_g171810 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 6.6e-80 302.0 197 79.2
SpUN0430_0010 Schrenkiella parvula HOM05D006342 ORTHO05D008155 7.3e-79 298.5 228 70.6
QL11p022738 Quercus lobata HOM05D006342 ORTHO05D008155 5.2e-77 292.4 229 69.0
Ah.01g010100 Amaranthus hybridus HOM05D006342 ORTHO05D008155 9.8e-76 288.1 212 69.3
FAN14G1047 Fragaria x ananassa HOM05D000343 ORTHO05D003187 4.6e-73 279.3 326 50.9
Haze_10585 Corylus avellana HOM05D006342 ORTHO05D008155 5.0e-72 275.8 277 57.0
AagrBONN_evm.TU.Sc2ySwM_228.424 Anthoceros agrestis HOM05D006342 ORTHO05D008155 1.9e-71 273.9 331 48.6
AagrBONN_evm.TU.Sc2ySwM_117.3744 Anthoceros agrestis HOM05D006342 ORTHO05D008155 5.1e-64 249.2 298 46.3
CBR_g45392 Chara braunii HOM05D006342 ORTHO05D008155 3.7e-59 233.0 273 48.0
PRCOL_00002739 Prasinoderma coloniale HOM05D006342 ORTHO05D008155 3.7e-59 233.0 303 47.2
SEGI_15165 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 7.3e-55 218.8 175 64.0
ATR0918G004 Amborella trichopoda HOM05D006342 ORTHO05D008155 1.4e-53 214.5 274 48.5
Cre04.g219787 Chlamydomonas reinhardtii HOM05D006342 ORTHO05D008155 2.8e-46 190.3 343 38.5
Aqoxy5G01924 Aquilegia oxysepala HOM05D006342 ORTHO05D008155 2.4e-45 187.2 128 74.2
Glyma.10G123801 Glycine max HOM05D006342 ORTHO05D008155 4.2e-34 149.8 103 71.8
Glyma.16G064700 Glycine max HOM05D006342 ORTHO05D008155 4.2e-34 149.8 103 71.8
ATR0782G112 Amborella trichopoda HOM05D006342 ORTHO05D008155 4.8e-30 136.3 94 74.5
arahy.Tifrunner.gnm1.ann1.6J847D Arachis hypogaea HOM05D006342 ORTHO05D008155 3.8e-27 126.7 99 66.7
arahy.Tifrunner.gnm1.ann1.RT43SE Arachis hypogaea HOM05D006342 ORTHO05D008155 3.8e-27 126.7 99 66.7
CSS0034348 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 8.4e-27 125.6 97 77.3
SEGI_15059 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 2.5e-26 124.0 107 61.7
arahy.Tifrunner.gnm1.ann1.2FS2S8 Arachis hypogaea HOM05D006342 ORTHO05D008155 3.2e-26 123.6 99 64.6
CARHR052370 Cardamine hirsuta HOM05D006342 ORTHO05D008155 3.7e-22 110.2 90 64.4
TAR376G0398 Trochodendron aralioides HOM05D000064 ORTHO05D001307 1.6e-14 84.7 51 80.4
arahy.Tifrunner.gnm1.ann1.P2KY5D Arachis hypogaea HOM05D006342 ORTHO05D008155 6.3e-14 82.8 79 55.7


User provided reference genes

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