Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025518 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D006676 1.7e-60 235.7 114 100.0
Actinidia17170 Actinidia chinensis HOM05D000290 ORTHO05D006676 3.8e-15 85.1 46 82.6
QL02p060375 Quercus lobata HOM05D000290 ORTHO05D006676 3.8e-15 85.1 83 53.0
Ciclev10019576m.g Citrus clementina HOM05D000290 ORTHO05D006676 6.4e-15 84.3 46 80.4
vmacro20482 Vaccinium macrocarpon HOM05D000290 ORTHO05D006676 1.9e-14 82.8 46 78.3
GSVIVG01035242001 Vitis vinifera HOM05D000290 ORTHO05D006676 5.4e-14 81.3 46 82.6
Manes.01G122600 Manihot esculenta HOM05D000290 ORTHO05D006676 3.5e-13 78.6 46 76.1
Atru.chr12.1226 Acer truncatum HOM05D000290 ORTHO05D006676 4.6e-13 78.2 46 78.3
CiPaw.04G048800 Carya illinoinensis HOM05D000290 ORTHO05D006676 4.6e-13 78.2 46 76.1
THA.LOC104822112 Tarenaya hassleriana HOM05D000290 ORTHO05D006676 1.3e-12 76.6 46 76.1
CANSAT01G1953 Cannabis sativa HOM05D000290 ORTHO05D006676 3.0e-12 75.5 46 73.9
Lalb_Chr04g0251481 Lupinus albus HOM05D000290 ORTHO05D006676 3.0e-12 75.5 46 73.9
Potri.004G075100 Populus trichocarpa HOM05D000290 ORTHO05D006676 3.0e-12 75.5 46 76.1
Dinv28236 Davidia involucrata HOM05D000290 ORTHO05D006676 3.9e-12 75.1 46 73.9
Carub.0002s1190 Capsella rubella HOM05D000290 ORTHO05D006676 5.1e-12 74.7 46 73.9
MELO3C023760.2 Cucumis melo HOM05D000290 ORTHO05D006676 5.1e-12 74.7 46 69.6
LjContig00141g0021713 Lotus japonicus HOM05D000290 ORTHO05D006676 5.1e-12 74.7 46 71.7
Nn4g24663 Nelumbo nucifera HOM05D000290 ORTHO05D006676 5.1e-12 74.7 46 71.7
TWI74G0971 Tripterygium wilfordii HOM05D000290 ORTHO05D006676 5.1e-12 74.7 46 73.9
TAR629G2667 Trochodendron aralioides HOM05D000290 ORTHO05D006676 5.1e-12 74.7 46 71.7
Thhalv10018274m.g Eutrema salsugineum HOM05D000290 ORTHO05D006676 6.7e-12 74.3 46 71.7
Oeu009443.1 Olea europaea HOM05D000290 ORTHO05D006676 6.7e-12 74.3 46 67.4
Aqoxy3G04138_Aqoxy3G04139 Aquilegia oxysepala HOM05D000290 ORTHO05D006676 8.7e-12 73.9 46 73.9
AL2G23430 Arabidopsis lyrata HOM05D000290 ORTHO05D006676 8.7e-12 73.9 46 69.6
CARHR057900 Cardamine hirsuta HOM05D000290 ORTHO05D006676 8.7e-12 73.9 46 69.6
BcaB03g15306 Brassica carinata HOM05D000290 ORTHO05D006676 1.1e-11 73.6 46 71.7
BcaC08g46093 Brassica carinata HOM05D000290 ORTHO05D006676 1.1e-11 73.6 46 71.7
C06p39280 Brassica napus HOM05D000290 ORTHO05D006676 1.1e-11 73.6 46 71.7
BolC6t39021H Brassica oleracea HOM05D000290 ORTHO05D006676 1.1e-11 73.6 46 71.7
Duzib138G1691 Durio zibethinus HOM05D000290 ORTHO05D006676 1.1e-11 73.6 46 71.7
CDE05G3543 Ceratophyllum demersum HOM05D000290 ORTHO05D006676 1.5e-11 73.2 46 69.6
Medtr5g077080 Medicago truncatula HOM05D000290 ORTHO05D006676 1.5e-11 73.2 46 71.7
RcHm_v2.0_Chr3g0490181 Rosa chinensis HOM05D000290 ORTHO05D006676 1.5e-11 73.2 46 73.9
Ah.10g032610 Amaranthus hybridus HOM05D000290 ORTHO05D006676 1.9e-11 72.8 49 67.3
Cfa007761 Carpinus fangiana HOM05D000290 ORTHO05D006676 1.9e-11 72.8 46 71.7
Ca_05767_v3 Cicer arietinum L. HOM05D000290 ORTHO05D006676 1.9e-11 72.8 46 71.7
CsaV3_3G020320 Cucumis sativus L. HOM05D000290 ORTHO05D006676 2.5e-11 72.4 46 67.4
Sp5g21020 Schrenkiella parvula HOM05D000290 ORTHO05D006676 2.5e-11 72.4 46 69.6
FvH4_1g30310 Fragaria vesca HOM05D000290 ORTHO05D006676 3.3e-11 72.0 46 71.7
FAN28G0448 Fragaria x ananassa HOM05D000290 ORTHO05D006676 3.3e-11 72.0 46 71.7
TPR.G7312 Trifolium pratense HOM05D000290 ORTHO05D006676 3.3e-11 72.0 46 71.7
Psat2g043960 Pisum sativum HOM05D000290 ORTHO05D006676 4.3e-11 71.6 46 69.6
Thecc.04G000900 Theobroma cacao HOM05D000290 ORTHO05D006676 4.3e-11 71.6 46 71.7
arahy.Tifrunner.gnm1.ann1.BI36IT Arachis hypogaea HOM05D000290 ORTHO05D006676 5.6e-11 71.2 46 69.6
arahy.Tifrunner.gnm1.ann1.LY1RHD Arachis hypogaea HOM05D004310 ORTHO05D005403 5.6e-11 71.2 46 69.6
arahy.Tifrunner.gnm1.ann1.NBYX54 Arachis hypogaea HOM05D000290 ORTHO05D006676 5.6e-11 71.2 46 69.6
A07p33030 Brassica napus HOM05D000290 ORTHO05D006676 5.6e-11 71.2 46 69.6
BraA07t30931Z Brassica rapa HOM05D000290 ORTHO05D006676 5.6e-11 71.2 46 69.6
DCAR_003415 Daucus carota HOM05D000238 ORTHO05D001156 7.4e-11 70.9 46 67.4
PSO063G2011 Papaver somniferum HOM05D000290 ORTHO05D006676 7.4e-11 70.9 46 65.2
Migut.K01085 Erythranthe guttata HOM05D000290 ORTHO05D006676 9.6e-11 70.5 46 65.2
Peaxi162Scf00005g01013 Petunia axillaris HOM05D000290 ORTHO05D006676 9.6e-11 70.5 46 67.4
SalBow5G1779 Salvia bowleyana HOM05D000290 ORTHO05D006676 9.6e-11 70.5 46 65.2
SalBow5G4017 Salvia bowleyana HOM05D000290 ORTHO05D006676 9.6e-11 70.5 46 65.2
HPP92_021276 Vanilla planifolia HOM05D002023 ORTHO05D002049 9.6e-11 70.5 46 65.2
Gohir.D07G175800 Gossypium hirsutum HOM05D000290 ORTHO05D006676 1.3e-10 70.1 46 65.2
Gorai.001G196700 Gossypium raimondii HOM05D000290 ORTHO05D006676 1.3e-10 70.1 46 65.2
Prupe.3G015600 Prunus persica HOM05D000290 ORTHO05D006676 1.3e-10 70.1 46 71.7
Cc07_g12870 Coffea canephora HOM05D000290 ORTHO05D006676 1.6e-10 69.7 46 67.4
FAN19G0545 Fragaria x ananassa HOM05D000290 ORTHO05D006676 1.6e-10 69.7 46 69.6
MD17G1270600 Malus domestica HOM05D000290 ORTHO05D006676 1.6e-10 69.7 46 67.4
MSTRG.3678 Avicennia marina HOM05D000290 ORTHO05D006676 2.1e-10 69.3 46 65.2
Os11g0549635 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D006676 2.8e-10 68.9 46 67.4
Zm00001eb201710 Zea mays HOM05D000290 ORTHO05D006676 2.8e-10 68.9 46 65.2
Eucgr.J01643 Eucalyptus grandis HOM05D000290 ORTHO05D006676 3.6e-10 68.6 46 67.4
Sopen04g003420 Solanum pennellii HOM05D000290 ORTHO05D006676 3.6e-10 68.6 46 65.2
PGSC0003DMG400045947 Solanum tuberosum HOM05D000290 ORTHO05D006676 3.6e-10 68.6 46 65.2
PGSC0003DMG404029448 Solanum tuberosum HOM05D000290 ORTHO05D006676 3.6e-10 68.6 46 65.2
Gohir.A07G169400 Gossypium hirsutum HOM05D000290 ORTHO05D006676 4.8e-10 68.2 46 63.0
ATR0598G192 Amborella trichopoda HOM05D000290 ORTHO05D006676 6.2e-10 67.8 46 69.6
AT1G65950 Arabidopsis thaliana HOM05D000290 ORTHO05D006676 6.2e-10 67.8 46 65.2
ECA246G5015 Erigeron canadensis HOM05D000290 ORTHO05D006676 8.1e-10 67.4 46 73.9
PGR042G1712 Punica granatum HOM05D000290 ORTHO05D006676 8.1e-10 67.4 44 75.0
Os11g0549686 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D006676 1.1e-09 67.0 46 65.2
SEGI_19016 Sequoiadendron giganteum HOM05D000290 ORTHO05D006676 1.1e-09 67.0 49 57.1
Solyc04g008300.1 Solanum lycopersicum HOM05D000290 ORTHO05D006676 1.1e-09 67.0 46 65.2
unitig_32.g11782 Utricularia gibba HOM05D000290 ORTHO05D006676 1.1e-09 67.0 46 58.7
SGA_v2.0_scaffold45G17125 Striga asiatica HOM05D000290 ORTHO05D006676 1.4e-09 66.6 46 63.0
Lsat_1_v5_gn_8_112060 Lactuca sativa HOM05D000290 ORTHO05D006676 3.1e-09 65.5 44 68.2
CAN.G966.4 Capsicum annuum HOM05D000290 ORTHO05D006676 5.3e-09 64.7 46 63.0
VMungo0647G0176 Vigna mungo HOM05D000290 ORTHO05D006676 6.9e-09 64.3 46 60.9
Glyma.02G241300 Glycine max HOM05D000290 ORTHO05D006676 9.0e-09 63.9 46 60.9
Sed0027292 Sechium edule HOM05D000290 ORTHO05D006676 9.0e-09 63.9 42 64.3
Haze_14311 Corylus avellana HOM05D000290 ORTHO05D006676 1.5e-08 63.2 46 69.6
Sc14g0006520 Simmondsia chinensis HOM05D000290 ORTHO05D006676 1.5e-08 63.2 46 65.2
HanXRQChr09g0259791 Helianthus annuus HOM05D000290 ORTHO05D006676 2.0e-08 62.8 44 68.2
Phvul.008G239800 Phaseolus vulgaris HOM05D000290 ORTHO05D006676 4.5e-08 61.6 46 60.9
Pp3c13_6150 Physcomitrium patens HOM05D000290 ORTHO05D006676 6.4e-07 57.8 50 50.0
unitig_0.g1736 Utricularia gibba HOM05D000290 ORTHO05D002418 3.2e-06 55.5 46 54.3
ATR0564G333 Amborella trichopoda HOM05D000290 ORTHO05D002418 4.2e-06 55.1 46 56.5
Nn5g28931 Nelumbo nucifera HOM05D000290 ORTHO05D002418 4.2e-06 55.1 46 54.3
AL8G42440 Arabidopsis lyrata HOM05D000290 ORTHO05D002418 5.5e-06 54.7 46 54.3
EL10Ac6g14732 Beta vulgaris HOM05D000290 ORTHO05D002418 5.5e-06 54.7 46 54.3
BcaC01g02725 Brassica carinata HOM05D000290 ORTHO05D002418 5.5e-06 54.7 46 54.3
A06p31730 Brassica napus HOM05D000290 ORTHO05D002418 5.5e-06 54.7 46 54.3
C03p61250 Brassica napus HOM05D000290 ORTHO05D002418 5.5e-06 54.7 46 54.3
BolC3t18386H Brassica oleracea HOM05D000290 ORTHO05D002418 5.5e-06 54.7 46 54.3
BraA06t26106Z Brassica rapa HOM05D000290 ORTHO05D002418 5.5e-06 54.7 46 54.3
CARHR293830 Cardamine hirsuta HOM05D000290 ORTHO05D002418 5.5e-06 54.7 46 54.3
CiPaw.03G135100 Carya illinoinensis HOM05D000290 ORTHO05D002418 5.5e-06 54.7 46 54.3
CDE05G1393 Ceratophyllum demersum HOM05D001902 ORTHO05D002418 5.5e-06 54.7 55 47.3
Haze_25028 Corylus avellana HOM05D000290 ORTHO05D002418 5.5e-06 54.7 46 54.3
Thhalv10003690m.g Eutrema salsugineum HOM05D000290 ORTHO05D002418 5.5e-06 54.7 46 54.3
Sp2g28020 Schrenkiella parvula HOM05D000290 ORTHO05D002418 5.5e-06 54.7 46 54.3
Hund03547 Selenicereus undatus HOM05D000290 ORTHO05D002418 5.5e-06 54.7 46 54.3
AUR62003319 Chenopodium quinoa HOM05D000290 ORTHO05D002418 7.1e-06 54.3 46 50.0
AUR62016263 Chenopodium quinoa HOM05D000290 ORTHO05D002418 7.1e-06 54.3 46 50.0
ClCG01G019260 Citrullus lanatus HOM05D000290 ORTHO05D002418 7.1e-06 54.3 46 52.2
Migut.H02416 Erythranthe guttata HOM05D000290 ORTHO05D002418 7.1e-06 54.3 46 54.3
PSO541G1439 Papaver somniferum HOM05D000290 ORTHO05D002418 7.1e-06 54.3 60 45.0
PSO675G0113 Papaver somniferum HOM05D000290 ORTHO05D002418 7.1e-06 54.3 60 45.0
SMO365G0022 Selaginella moellendorffii HOM05D000290 ORTHO05D006676 7.1e-06 54.3 46 50.0
MSTRG.3805 Avicennia marina HOM05D000290 ORTHO05D002418 9.3e-06 53.9 46 50.0
Nitab4.5_0005469g0010 Nicotiana tabacum HOM05D000290 ORTHO05D006676 9.3e-06 53.9 42 61.9
SalBow5G0667 Salvia bowleyana HOM05D000290 ORTHO05D002418 9.3e-06 53.9 46 50.0


User provided reference genes

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