Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.2e-149 533.1 267 100.0
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.0e-148 530.0 267 99.6
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 1.2e-136 490.0 267 90.3
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 3.2e-134 481.9 267 88.8
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 3.2e-134 481.9 266 89.5
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.6e-133 479.6 267 89.5
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 8.0e-133 477.2 267 86.5
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.0e-132 476.9 268 88.8
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 9.8e-131 470.3 267 86.1
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 2.8e-130 468.8 267 86.9
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 2.8e-130 468.8 268 86.9
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 3.7e-130 468.4 267 86.1
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 4.8e-130 468.0 267 85.8
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 8.3e-130 467.2 267 85.8
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 3.1e-129 465.3 267 85.4
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 4.1e-129 464.9 267 85.0
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 1.6e-128 463.0 267 85.8
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 1.6e-128 463.0 267 85.8
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 2.7e-128 462.2 267 83.9
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 1.3e-127 459.9 268 85.4
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 1.7e-127 459.5 267 83.9
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 2.2e-127 459.1 267 83.5
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 5.0e-127 458.0 267 83.9
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 8.5e-127 457.2 264 83.7
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 8.5e-127 457.2 262 85.1
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 1.9e-126 456.1 268 84.7
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.9e-126 456.1 269 83.3
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 7.2e-126 454.1 259 84.9
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 9.4e-126 453.8 267 82.0
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 9.4e-126 453.8 250 90.0
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 3.6e-125 451.8 264 85.6
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 8.0e-125 450.7 267 84.3
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.4e-124 449.9 264 83.3
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.8e-124 449.5 255 89.0
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 1.8e-124 449.5 267 83.1
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.8e-124 449.5 262 83.2
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.3e-124 449.1 267 83.9
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.0e-124 448.7 264 82.2
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 3.0e-124 448.7 262 83.2
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 4.0e-124 448.4 267 83.5
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 4.0e-124 448.4 267 82.8
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 8.8e-124 447.2 264 83.7
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.5e-123 446.4 269 84.4
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 2.6e-123 445.7 274 82.1
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 3.4e-123 445.3 265 84.5
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 4.4e-123 444.9 268 84.0
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 5.7e-123 444.5 267 82.4
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.7e-123 444.5 267 81.6
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.7e-123 444.5 267 82.0
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 7.5e-123 444.1 267 82.0
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 9.8e-123 443.7 267 82.8
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 2.2e-122 442.6 267 83.1
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 2.8e-122 442.2 267 81.3
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 2.8e-122 442.2 267 81.3
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 4.9e-122 441.4 259 83.0
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 4.9e-122 441.4 268 82.5
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 6.3e-122 441.0 251 86.1
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.1e-121 440.3 268 81.0
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 1.1e-121 440.3 275 81.1
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 3.1e-121 438.7 261 84.3
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 7.0e-121 437.6 270 81.5
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 9.1e-121 437.2 267 81.3
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.6e-120 436.4 267 82.8
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 3.5e-120 435.3 266 82.3
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 7.7e-120 434.1 265 81.5
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.0e-119 433.7 262 81.7
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 1.3e-119 433.3 268 83.6
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 1.7e-119 433.0 267 81.6
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 2.9e-119 432.2 267 80.1
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.8e-119 431.8 267 80.1
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 6.6e-119 431.0 264 79.9
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 6.6e-119 431.0 267 80.1
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.5e-118 429.9 267 79.8
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 1.5e-118 429.9 268 81.3
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 1.9e-118 429.5 267 81.3
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 2.5e-118 429.1 268 81.3
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 4.2e-118 428.3 267 81.3
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 7.2e-118 427.6 264 79.2
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 7.2e-118 427.6 261 80.8
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 1.2e-117 426.8 267 79.0
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.6e-117 425.2 267 79.8
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 3.6e-117 425.2 255 83.9
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.4e-116 423.3 264 78.4
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 4.0e-116 421.8 250 82.8
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 1.2e-115 420.2 250 82.0
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 3.4e-115 418.7 294 74.5
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 1.3e-114 416.8 238 84.5
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 2.2e-114 416.0 267 78.3
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 6.3e-114 414.5 254 79.9
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 8.3e-114 414.1 291 74.6
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 1.1e-113 413.7 267 77.9
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 9.2e-113 410.6 261 77.4
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 1.2e-112 410.2 308 70.1
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 1.6e-112 409.8 280 76.1
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.3e-111 406.8 264 76.9
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 3.9e-111 405.2 259 78.0
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 6.6e-111 404.4 270 75.6
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 8.6e-111 404.1 284 75.4
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 1.1e-110 403.7 320 67.8
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 1.5e-110 403.3 265 76.6
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 1.6e-109 399.8 269 75.5
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.8e-109 399.1 263 76.8
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 8.9e-108 394.0 268 73.1
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 4.9e-106 388.3 252 77.4
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 8.3e-106 387.5 256 76.6
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.1e-105 387.1 250 77.6
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 2.4e-105 386.0 266 74.1
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 3.2e-105 385.6 268 72.4
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 7.0e-105 384.4 260 74.6
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 9.2e-105 384.0 257 73.9
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 9.2e-105 384.0 257 73.9
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 1.2e-104 383.6 275 73.5
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 9.5e-102 374.0 265 70.9
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 2.8e-101 372.5 266 72.6
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 8.9e-100 367.5 262 71.4
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 2.0e-99 366.3 268 70.9
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 2.0e-99 366.3 257 72.0
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 2.6e-99 365.9 262 71.4
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 3.4e-99 365.5 262 71.4
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.4e-99 365.2 227 80.2
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 7.5e-99 364.4 262 70.6
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 9.8e-99 364.0 262 69.8
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 9.8e-99 364.0 262 71.0
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.9e-98 362.5 263 70.3
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 3.7e-98 362.1 262 70.2
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 4.9e-98 361.7 262 70.6
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 8.3e-98 360.9 262 71.4
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 8.3e-98 360.9 262 71.4
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 5.4e-97 358.2 262 70.6
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 7.1e-97 357.8 267 71.5
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.2e-96 357.1 253 71.1
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.2e-96 357.1 262 72.5
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 1.2e-96 357.1 257 70.8
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 3.5e-96 355.5 235 75.3
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 1.0e-95 354.0 281 67.6
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.7e-95 353.2 260 69.6
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 8.6e-95 350.9 262 69.8
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 4.3e-94 348.6 261 68.6
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 5.4e-89 331.6 206 81.6
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.2e-88 330.5 199 81.9
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 6.0e-88 328.2 261 65.5
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 2.3e-87 326.2 266 64.3
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 3.0e-87 325.9 264 63.3
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 6.2e-85 318.2 262 63.4
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 3.1e-84 315.8 198 78.8
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 4.0e-84 315.5 266 62.8
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 2.9e-82 309.3 241 69.3
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 6.4e-82 308.1 263 62.0
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 5.4e-81 305.1 262 60.3
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 4.2e-73 278.9 189 74.6
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 6.0e-72 275.0 173 77.5
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-68 264.2 144 88.9
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 2.5e-49 199.9 121 83.5
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 6.9e-44 181.8 212 50.5
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 4.2e-41 172.6 107 79.4
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 2.1e-40 170.2 242 43.4
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 3.9e-39 166.0 147 60.5
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 2.8e-37 159.8 193 45.1
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.8e-31 140.6 93 74.2
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.7e-29 134.0 74 90.5
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-27 127.1 238 39.5
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.0e-26 124.8 76 81.6
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 2.7e-19 100.1 92 57.6
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 3.5e-19 99.8 186 38.7
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 3.8e-18 96.3 150 36.7
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 1.6e-16 90.9 124 50.0
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.4e-14 82.8 40 97.5
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 5.4e-12 75.9 144 36.8
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.9e-10 70.1 41 75.6
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 8.5e-10 68.6 138 36.2
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 1.1e-09 68.2 43 67.4
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 1.8e-07 60.8 86 36.0


User provided reference genes

Program Settings