Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025501 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 4.4e-59 231.1 118 100.0
CSS0016261 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 1.6e-29 132.9 120 63.3
Potri.011G145200 Populus trichocarpa HOM05D007735 ORTHO05D009638 1.8e-20 102.8 140 48.6
Cfa007115 Carpinus fangiana HOM05D007735 ORTHO05D009638 3.1e-20 102.1 132 50.8
Manes.01G157700 Manihot esculenta HOM05D007735 ORTHO05D009638 3.1e-20 102.1 129 48.8
Nn5g31061 Nelumbo nucifera HOM05D007735 ORTHO05D009638 3.1e-20 102.1 125 53.6
Thecc.01G001800 Theobroma cacao HOM05D007735 ORTHO05D009638 9.9e-19 97.1 135 50.4
Cc07_g12240 Coffea canephora HOM05D007735 ORTHO05D009638 1.7e-18 96.3 133 47.4
PGSC0003DMG400013637 Solanum tuberosum HOM05D007735 ORTHO05D009638 2.9e-18 95.5 140 47.9
Sabra11G0130300 Salix brachista HOM05D007735 ORTHO05D009638 3.8e-18 95.1 129 49.6
Sopen02g026900 Solanum pennellii HOM05D007735 ORTHO05D009638 3.8e-18 95.1 140 49.3
Solyc02g082240.1 Solanum lycopersicum HOM05D007735 ORTHO05D009638 6.4e-18 94.4 141 48.9
Glyma.01G156500 Glycine max HOM05D007735 ORTHO05D009638 1.1e-17 93.6 125 48.8
VMungo1215G0699 Vigna mungo HOM05D007735 ORTHO05D009638 1.4e-17 93.2 126 49.2
Glyma.16G114400 Glycine max HOM05D007735 ORTHO05D009638 2.4e-17 92.4 129 48.1
QL06p053348 Quercus lobata HOM05D007735 ORTHO05D009638 3.2e-17 92.0 134 44.8
TAR381G1223 Trochodendron aralioides HOM05D007735 ORTHO05D009638 4.2e-17 91.7 121 49.6
Phvul.002G119100 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 9.3e-17 90.5 125 48.0
Manes.02G117000 Manihot esculenta HOM05D007735 ORTHO05D009638 1.2e-16 90.1 133 44.4
Peaxi162Scf00918g00052 Petunia axillaris HOM05D007735 ORTHO05D009638 1.2e-16 90.1 136 43.4
RcHm_v2.0_Chr2g0096741 Rosa chinensis HOM05D007735 ORTHO05D009638 1.6e-16 89.7 127 48.0
Sabra16G0309000 Salix brachista HOM05D007735 ORTHO05D009638 1.6e-16 89.7 133 48.9
Glyma.09G195900 Glycine max HOM05D007735 ORTHO05D009638 3.5e-16 88.6 127 48.0
FAN23G3070 Fragaria x ananassa HOM05D007735 ORTHO05D009638 6.0e-16 87.8 129 46.5
Potri.001G456700 Populus trichocarpa HOM05D007735 ORTHO05D009638 6.0e-16 87.8 114 50.0
Glyma.11G088300 Glycine max HOM05D007735 ORTHO05D009638 1.3e-15 86.7 126 46.0
FvH4_1g09950 Fragaria vesca HOM05D007735 ORTHO05D009638 1.8e-15 86.3 129 45.0
FAN19G1654 Fragaria x ananassa HOM05D007735 ORTHO05D009638 1.8e-15 86.3 129 45.0
Lalb_Chr09g0324871 Lupinus albus HOM05D007735 ORTHO05D009638 2.3e-15 85.9 122 46.7
Phvul.003G272000 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 3.0e-15 85.5 113 46.9
FAN28G1635 Fragaria x ananassa HOM05D007735 ORTHO05D009638 5.1e-15 84.7 129 45.0
Lalb_Chr05g0214991 Lupinus albus HOM05D007735 ORTHO05D009638 5.1e-15 84.7 111 50.5
Prupe.7G187700 Prunus persica HOM05D007735 ORTHO05D009638 6.7e-15 84.3 146 45.9
VMungo0251G0553 Vigna mungo HOM05D007735 ORTHO05D009638 1.1e-14 83.6 127 44.9
Medtr8g072610 Medicago truncatula HOM05D007735 ORTHO05D009638 1.5e-14 83.2 126 46.0
TPR.G19311 Trifolium pratense HOM05D007735 ORTHO05D009638 1.5e-14 83.2 126 45.2
FAN26G0974 Fragaria x ananassa HOM05D007735 ORTHO05D009638 3.3e-14 82.0 119 47.9
Lalb_Chr16g0380221 Lupinus albus HOM05D007735 ORTHO05D009638 3.3e-14 82.0 124 44.4
ECA246G0225 Erigeron canadensis HOM05D007735 ORTHO05D009638 4.3e-14 81.6 116 47.4
Sc03g0004120 Simmondsia chinensis HOM05D007735 ORTHO05D009638 4.3e-14 81.6 97 51.5
FAN23G2983 Fragaria x ananassa HOM05D007735 ORTHO05D009638 7.4e-14 80.9 119 47.9
CsaV3_3G000130 Cucumis sativus L. HOM05D007735 ORTHO05D009638 9.6e-14 80.5 106 46.2
CsaV3_UNG155170 Cucumis sativus L. HOM05D007735 ORTHO05D009638 9.6e-14 80.5 106 46.2
Gohir.A05G393900 Gossypium hirsutum HOM05D007735 ORTHO05D009638 9.6e-14 80.5 123 46.3
Gorai.012G025100 Gossypium raimondii HOM05D007735 ORTHO05D009638 9.6e-14 80.5 123 46.3
Lalb_Chr05g0229481 Lupinus albus HOM05D007735 ORTHO05D009638 9.6e-14 80.5 116 48.3
Nitab4.5_0006309g0010 Nicotiana tabacum HOM05D007735 ORTHO05D009638 1.3e-13 80.1 119 47.1
Aqoxy6G03024 Aquilegia oxysepala HOM05D007735 ORTHO05D009638 2.1e-13 79.3 128 43.8
Eucgr.J02566 Eucalyptus grandis HOM05D007735 ORTHO05D009638 2.1e-13 79.3 152 42.8
DCAR_014121 Daucus carota HOM05D007735 ORTHO05D009638 2.8e-13 79.0 111 50.5
DCAR_014122 Daucus carota HOM05D007735 ORTHO05D009638 2.8e-13 79.0 111 50.5
Gohir.D04G020900 Gossypium hirsutum HOM05D007735 ORTHO05D009638 2.8e-13 79.0 123 44.7
LjContig00247g0020335 Lotus japonicus HOM05D007735 ORTHO05D009638 2.8e-13 79.0 125 44.8
Cpa.g.sc6.350 Carica papaya HOM05D007735 ORTHO05D009638 3.7e-13 78.6 107 49.5
Oeu045753.2 Olea europaea HOM05D007735 ORTHO05D009638 4.8e-13 78.2 126 42.1
Lsat_1_v5_gn_2_74220 Lactuca sativa HOM05D007735 ORTHO05D009638 6.2e-13 77.8 127 46.5
Nitab4.5_0004448g0030 Nicotiana tabacum HOM05D007735 ORTHO05D009638 8.1e-13 77.4 145 42.8
Nitab4.5_0000855g0160 Nicotiana tabacum HOM05D007735 ORTHO05D009638 1.8e-12 76.3 143 42.7
Oeu043409.2 Olea europaea HOM05D007735 ORTHO05D009638 1.8e-12 76.3 128 43.0
Eucgr.I02199 Eucalyptus grandis HOM05D007735 ORTHO05D009638 3.1e-12 75.5 151 39.1
Psat4g107200 Pisum sativum HOM05D007735 ORTHO05D009638 4.0e-12 75.1 118 44.1
Nn6g31607 Nelumbo nucifera HOM05D007735 ORTHO05D009638 1.5e-11 73.2 128 42.2
MELO3C013706.2 Cucumis melo HOM05D007735 ORTHO05D009638 2.6e-11 72.4 108 43.5
Sed0019252 Sechium edule HOM05D007735 ORTHO05D009638 1.3e-10 70.1 110 43.6
SGA_v2.0_scaffold108G30951 Striga asiatica HOM05D007735 ORTHO05D009638 1.3e-10 70.1 128 41.4
SGA_v2.0_scaffold2G00933 Striga asiatica HOM05D007735 ORTHO05D009638 1.3e-10 70.1 122 38.5
arahy.Tifrunner.gnm1.ann1.Q37N58 Arachis hypogaea HOM05D007735 ORTHO05D009638 2.9e-10 68.9 107 43.9
arahy.Tifrunner.gnm1.ann1.S9U9HD Arachis hypogaea HOM05D007735 ORTHO05D009638 2.9e-10 68.9 107 43.9
Lsat_1_v5_gn_3_69161 Lactuca sativa HOM05D007735 ORTHO05D009638 2.9e-10 68.9 120 40.8
Lj2g0017807 Lotus japonicus HOM05D007735 ORTHO05D009638 2.9e-10 68.9 130 40.8
Nitab4.5_0004507g0030 Nicotiana tabacum HOM05D007735 ORTHO05D009638 3.8e-10 68.6 118 41.5
PGSC0003DMG400018690 Solanum tuberosum HOM05D007735 ORTHO05D009638 3.8e-10 68.6 128 37.5
Lsat_1_v5_gn_8_114121 Lactuca sativa HOM05D007735 ORTHO05D009638 4.9e-10 68.2 126 40.5
Ca_25020_v3 Cicer arietinum L. HOM05D007735 ORTHO05D009638 8.4e-10 67.4 127 39.4
Atru.chr3.61 Acer truncatum HOM05D007735 ORTHO05D009638 1.1e-09 67.0 80 48.8
TPR.G33757 Trifolium pratense HOM05D001957 ORTHO05D002015 1.1e-09 67.0 130 38.5
Lsat_1_v5_gn_8_114101 Lactuca sativa HOM05D007735 ORTHO05D009638 7.1e-09 64.3 128 39.8
Medtr5g024910 Medicago truncatula HOM05D007735 ORTHO05D009638 7.1e-09 64.3 130 39.2
Psat2g147360 Pisum sativum HOM05D007735 ORTHO05D009638 7.1e-09 64.3 133 36.1
ClCG10G000110 Citrullus lanatus HOM05D007735 ORTHO05D009638 9.3e-09 63.9 108 44.4
Haze_22869 Corylus avellana HOM05D007735 ORTHO05D009638 9.3e-09 63.9 130 40.8
COL.COLO4_22568 Corchorus olitorius HOM05D007735 ORTHO05D009638 1.6e-08 63.2 117 43.6
PGSC0003DMG400015147 Solanum tuberosum HOM05D007735 ORTHO05D009638 1.6e-08 63.2 103 42.7
Migut.H02270 Erythranthe guttata HOM05D007735 ORTHO05D009638 1.8e-07 59.7 125 35.2
Nitab4.5_0000304g0050 Nicotiana tabacum HOM05D007735 ORTHO05D009638 1.1e-06 57.0 83 42.2
CiPaw.07G132500 Carya illinoinensis HOM05D007735 ORTHO05D009638 1.5e-06 56.6 129 40.3
Migut.H02268 Erythranthe guttata HOM05D007735 ORTHO05D009638 2.5e-06 55.8 122 34.4


User provided reference genes

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