Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.0e-65 252.3 126 100.0
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.1e-59 232.3 147 84.4
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.0e-58 229.9 147 83.7
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.8e-58 227.3 147 82.3
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.8e-58 227.3 147 82.3
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 9.5e-52 206.8 147 73.5
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 3.6e-51 204.9 147 72.8
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.0e-51 203.8 122 85.2
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 3.4e-49 198.4 147 72.8
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 1.7e-48 196.1 147 70.7
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.2e-48 195.7 121 84.3
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 3.7e-48 194.9 146 67.8
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.4e-47 193.0 141 72.3
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.4e-47 191.0 145 68.3
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 7.0e-47 190.7 147 66.7
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 9.2e-47 190.3 147 67.3
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.2e-46 189.9 147 66.7
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.2e-46 189.9 147 67.3
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.2e-46 189.9 147 67.3
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 2.0e-46 189.1 147 65.3
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.7e-46 188.7 147 68.0
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.7e-46 188.7 146 67.1
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 2.3e-45 185.7 147 65.3
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 3.0e-45 185.3 146 65.8
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 5.0e-45 184.5 147 63.3
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 6.6e-45 184.1 147 66.0
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.1e-44 183.3 146 65.8
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.1e-44 183.3 147 63.9
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.5e-44 183.0 147 64.6
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.9e-44 182.6 122 74.6
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 2.5e-44 182.2 147 63.9
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 3.3e-44 181.8 147 61.9
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 3.3e-44 181.8 147 61.9
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 3.3e-44 181.8 147 65.3
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 4.3e-44 181.4 147 63.9
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 4.3e-44 181.4 146 64.4
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 5.6e-44 181.0 147 63.9
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 5.6e-44 181.0 147 63.9
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 5.6e-44 181.0 147 61.2
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 7.3e-44 180.6 147 66.0
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 7.3e-44 180.6 147 63.9
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 1.6e-43 179.5 147 63.3
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 1.6e-43 179.5 147 63.3
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 2.8e-43 178.7 147 63.3
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 2.8e-43 178.7 147 63.3
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.8e-43 178.7 147 63.3
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 3.6e-43 178.3 147 61.9
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 3.6e-43 178.3 147 61.9
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 3.6e-43 178.3 147 61.9
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.6e-43 178.3 147 63.3
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 3.6e-43 178.3 147 61.9
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 4.7e-43 177.9 146 63.7
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 8.1e-43 177.2 147 63.3
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 8.1e-43 177.2 145 62.1
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 8.1e-43 177.2 147 61.9
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 8.1e-43 177.2 147 61.9
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.1e-42 176.8 147 61.9
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.1e-42 176.8 147 61.9
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.1e-42 176.8 147 61.9
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.1e-42 176.8 147 61.9
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.8e-42 176.0 147 61.9
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.8e-42 176.0 147 61.2
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.3e-42 175.6 147 61.9
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 2.3e-42 175.6 147 61.2
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.1e-42 175.3 147 61.2
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 4.0e-42 174.9 147 62.6
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 4.0e-42 174.9 147 62.6
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 5.2e-42 174.5 147 61.9
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 5.2e-42 174.5 147 61.9
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 8.9e-42 173.7 147 61.2
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 1.2e-41 173.3 147 60.5
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 1.2e-41 173.3 147 60.5
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.5e-41 172.9 147 60.5
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.5e-41 172.9 147 59.2
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 2.0e-41 172.6 147 61.2
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 2.0e-41 172.6 147 61.2
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 2.0e-41 172.6 147 61.2
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 2.0e-41 172.6 147 61.2
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 3.4e-41 171.8 122 70.5
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 4.4e-41 171.4 147 60.5
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 4.4e-41 171.4 147 59.2
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 5.8e-41 171.0 147 60.5
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 7.5e-41 170.6 147 61.2
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 7.5e-41 170.6 147 59.9
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 7.5e-41 170.6 147 59.9
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 9.8e-41 170.2 147 61.2
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 9.8e-41 170.2 147 59.9
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 1.3e-40 169.9 147 60.5
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.3e-40 169.9 147 60.5
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 1.3e-40 169.9 147 60.5
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 1.7e-40 169.5 147 58.5
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 1.7e-40 169.5 147 56.5
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 1.7e-40 169.5 147 58.5
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 2.2e-40 169.1 147 61.2
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 2.9e-40 168.7 147 59.9
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 2.9e-40 168.7 147 59.2
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 4.9e-40 167.9 147 59.9
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 4.9e-40 167.9 147 58.5
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 4.9e-40 167.9 147 59.2
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 4.9e-40 167.9 147 59.2
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 4.9e-40 167.9 147 59.2
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 6.4e-40 167.5 147 59.9
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 8.3e-40 167.2 147 58.5
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 8.3e-40 167.2 147 59.9
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.1e-39 166.8 147 59.2
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 1.1e-39 166.8 147 57.8
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 1.4e-39 166.4 147 59.2
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.4e-39 165.6 146 58.2
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 3.2e-39 165.2 147 59.9
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 4.1e-39 164.9 147 56.5
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 5.4e-39 164.5 147 58.5
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 5.4e-39 164.5 147 57.1
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 5.4e-39 164.5 147 59.2
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 7.1e-39 164.1 145 58.6
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 7.1e-39 164.1 147 55.8
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.2e-38 163.3 146 58.2
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.2e-38 163.3 122 65.6
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 2.1e-38 162.5 147 57.1
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 2.1e-38 162.5 147 55.8
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 2.7e-38 162.2 147 56.5
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 3.5e-38 161.8 147 56.5
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 3.5e-38 161.8 147 57.1
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 4.6e-38 161.4 147 54.4
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 4.6e-38 161.4 146 56.2
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 1.0e-37 160.2 147 55.1
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.3e-37 159.8 127 64.6
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.3e-37 159.1 136 69.1
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 3.0e-37 158.7 147 55.1
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 3.0e-37 158.7 147 56.5
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.5e-36 156.4 147 53.7
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.3e-36 155.2 118 66.1
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 7.3e-36 154.1 120 62.5
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 9.5e-36 153.7 112 67.0
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.6e-35 152.9 147 53.7
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 2.1e-35 152.5 147 56.5
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 2.8e-35 152.1 147 55.8
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 4.7e-35 151.4 147 53.7
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 1.8e-34 149.4 122 60.7
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 7.6e-33 144.1 122 57.4
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.3e-32 143.3 122 56.6
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 2.4e-31 139.0 140 51.4
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.4e-31 137.9 68 94.1
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.2e-30 136.7 120 58.3
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.2e-30 136.7 134 57.5
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 2.1e-30 136.0 93 66.7
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 4.2e-23 111.7 117 48.7
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 1.5e-20 103.2 123 43.1
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.5e-20 103.2 129 39.5
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 9.6e-20 100.5 111 46.8
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 1.2e-17 93.6 117 41.0
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.6e-14 83.2 122 41.8
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 2.3e-13 79.3 134 34.3
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 8.1e-11 70.9 86 44.2


User provided reference genes

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