Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 3.9e-79 298.1 157 100.0
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 6.7e-39 164.5 154 64.3
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 9.7e-38 160.6 155 65.2
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 4.8e-37 158.3 151 67.5
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 4.1e-36 155.2 154 63.0
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 4.1e-36 155.2 139 67.6
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.5e-30 136.7 155 60.0
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 2.0e-30 136.3 149 59.7
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 4.1e-28 128.6 154 55.8
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 2.7e-27 125.9 152 54.6
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 3.5e-27 125.6 152 53.3
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 4.5e-27 125.2 105 66.7
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 5.9e-27 124.8 154 55.8
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 1.3e-26 123.6 157 51.6
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 2.2e-26 122.9 150 57.3
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 5.0e-26 121.7 154 54.5
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 6.5e-26 121.3 152 55.9
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 8.5e-26 120.9 157 52.9
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 1.5e-25 120.2 157 52.2
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.9e-25 119.8 155 56.1
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 3.2e-25 119.0 150 54.0
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 4.2e-25 118.6 150 53.3
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 5.5e-25 118.2 151 55.0
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 7.2e-25 117.9 152 52.0
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 9.4e-25 117.5 150 53.3
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 1.2e-24 117.1 150 56.0
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.2e-24 117.1 158 53.8
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 1.6e-24 116.7 149 53.0
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 1.6e-24 116.7 157 51.0
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 2.1e-24 116.3 142 53.5
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 2.1e-24 116.3 150 52.7
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 2.7e-24 115.9 157 52.2
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 4.7e-24 115.2 151 53.6
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 1.0e-23 114.0 151 49.7
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.0e-23 114.0 161 52.2
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 1.4e-23 113.6 150 50.7
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 1.4e-23 113.6 83 74.7
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 1.8e-23 113.2 153 52.9
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.3e-23 112.8 153 51.0
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 4.0e-23 112.1 153 52.9
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 4.0e-23 112.1 158 51.3
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 5.2e-23 111.7 150 49.3
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 5.2e-23 111.7 153 51.0
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 8.8e-23 110.9 76 78.9
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 1.2e-22 110.5 149 53.0
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.5e-22 110.2 150 49.3
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 1.5e-22 110.2 153 52.9
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 2.0e-22 109.8 132 55.3
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 2.0e-22 109.8 77 74.0
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.6e-22 109.4 153 50.3
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.6e-22 109.4 153 51.0
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.6e-22 109.4 150 49.3
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 5.7e-22 108.2 150 48.7
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 7.5e-22 107.8 151 51.0
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 7.5e-22 107.8 150 50.7
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 9.8e-22 107.5 151 51.7
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 1.3e-21 107.1 150 50.7
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 1.3e-21 107.1 149 52.3
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 2.2e-21 106.3 161 47.2
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 3.7e-21 105.5 142 50.0
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 4.8e-21 105.1 76 73.7
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 8.3e-21 104.4 168 47.0
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 1.4e-20 103.6 144 48.6
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 1.8e-20 103.2 126 48.4
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 1.8e-20 103.2 136 50.7
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 2.4e-20 102.8 153 47.7
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 9.1e-20 100.9 125 52.8
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 9.1e-20 100.9 158 48.1
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 9.1e-20 100.9 180 45.6
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 1.6e-19 100.1 153 47.7
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 1.6e-19 100.1 149 47.0
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 1.6e-19 100.1 102 57.8
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 2.0e-19 99.8 151 47.7
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 2.0e-19 99.8 77 71.4
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 3.5e-19 99.0 155 47.7
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 3.5e-19 99.0 76 72.4
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 3.5e-19 99.0 150 48.7
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 3.5e-19 99.0 91 60.4
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 4.5e-19 98.6 152 46.1
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 4.5e-19 98.6 92 62.0
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 5.9e-19 98.2 137 48.2
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 1.0e-18 97.4 151 47.0
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 1.3e-18 97.1 152 48.7
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 1.3e-18 97.1 150 48.7
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 2.3e-18 96.3 104 57.7
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 2.3e-18 96.3 91 59.3
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 2.9e-18 95.9 153 48.4
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 5.0e-18 95.1 150 48.0
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 1.5e-17 93.6 97 55.7
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 1.9e-17 93.2 93 58.1
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 3.3e-17 92.4 72 70.8
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 4.2e-17 92.0 82 62.2
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 4.2e-17 92.0 140 48.6
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 5.5e-17 91.7 155 45.2
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 7.2e-17 91.3 68 75.0
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 1.2e-16 90.5 153 45.8
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.6e-16 90.1 97 58.8
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.6e-16 90.1 98 57.1
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 2.1e-16 89.7 95 58.9
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 2.8e-16 89.4 97 55.7
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 2.8e-16 89.4 77 64.9
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 1.0e-15 87.4 150 46.0
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 1.4e-15 87.0 77 63.6
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 1.8e-15 86.7 97 54.6
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 3.0e-15 85.9 81 60.5
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 3.0e-15 85.9 97 50.5
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 4.0e-15 85.5 76 64.5
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 5.2e-15 85.1 153 45.1
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 5.2e-15 85.1 97 51.5
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 6.8e-15 84.7 86 59.3
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 1.3e-13 80.5 67 65.7
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 3.7e-13 79.0 90 52.2
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 6.3e-13 78.2 97 51.5
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 2.4e-12 76.3 138 42.0
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 3.1e-12 75.9 82 58.5
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 3.1e-12 75.9 89 53.9
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 3.1e-12 75.9 82 58.5
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 4.1e-12 75.5 66 63.6
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 4.1e-12 75.5 82 57.3
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 4.1e-12 75.5 82 57.3
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 4.1e-12 75.5 91 53.8
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 4.1e-12 75.5 82 57.3
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 7.0e-12 74.7 68 60.3
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 7.0e-12 74.7 82 57.3
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 2.0e-11 73.2 96 46.9
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 2.7e-11 72.8 150 42.0
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 3.5e-11 72.4 90 51.1
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 1.3e-10 70.5 79 51.9
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 1.3e-10 70.5 59 64.4
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 2.9e-10 69.3 155 41.9
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 2.5e-09 66.2 96 42.7
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 9.5e-09 64.3 104 47.1
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 3.6e-08 62.4 153 35.3
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 3.6e-08 62.4 87 48.3
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 2.3e-07 59.7 81 48.1
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 8.9e-07 57.8 68 54.4


User provided reference genes

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