Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.8e-249 864.4 441 100.0
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.4e-206 722.2 501 77.4
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.2e-197 693.3 474 77.6
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.2e-189 666.8 423 82.3
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.5e-165 586.6 493 63.1
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 8.5e-164 580.9 488 63.1
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 1.0e-161 573.9 498 63.1
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 3.9e-161 572.0 497 62.8
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.4e-158 562.8 482 63.3
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 4.1e-158 562.0 493 62.3
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 3.8e-156 555.4 496 61.3
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 8.5e-156 554.3 508 60.6
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 2.1e-154 549.7 494 60.3
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 4.7e-154 548.5 501 59.9
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 6.1e-154 548.1 516 58.9
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 1.4e-153 547.0 501 60.1
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 2.3e-153 546.2 475 62.3
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 1.1e-152 543.9 494 61.1
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 3.3e-152 542.3 473 62.2
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 4.4e-152 542.0 488 59.2
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 1.1e-150 537.3 490 60.0
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 1.8e-150 536.6 488 59.6
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 5.3e-150 535.0 464 60.8
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 1.5e-149 533.5 493 59.0
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 2.0e-149 533.1 522 55.4
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 7.7e-149 531.2 490 59.6
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 2.9e-148 529.3 495 58.4
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 6.5e-148 528.1 491 60.3
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.4e-147 526.9 490 57.8
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 3.2e-147 525.8 486 59.9
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 1.6e-146 523.5 494 58.9
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 2.1e-146 523.1 490 57.6
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 4.7e-146 521.9 498 57.6
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 4.7e-146 521.9 490 58.0
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 6.1e-146 521.5 497 57.9
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 6.1e-146 521.5 505 56.6
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 1.8e-145 520.0 493 59.2
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 2.3e-145 519.6 503 57.7
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 2.3e-145 519.6 497 57.3
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 3.0e-145 519.2 493 58.8
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 2.0e-144 516.5 482 58.3
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 5.7e-144 515.0 503 55.1
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 7.4e-144 514.6 492 56.9
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 7.4e-144 514.6 492 56.9
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 1.7e-143 513.5 498 56.8
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 4.8e-143 511.9 497 56.7
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.1e-142 510.8 492 56.5
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 1.8e-142 510.0 505 56.6
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 3.1e-142 509.2 496 57.3
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 3.1e-142 509.2 470 59.1
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.6e-141 506.9 492 56.3
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 2.6e-141 506.1 495 56.4
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 4.5e-141 505.4 514 55.1
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 4.5e-141 505.4 493 57.2
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.9e-141 505.0 492 55.7
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 1.0e-140 504.2 501 55.9
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.0e-140 504.2 482 56.0
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 1.7e-140 503.4 480 57.1
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 2.2e-140 503.1 495 55.8
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.1e-139 500.7 493 54.2
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 1.9e-139 500.0 494 55.5
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 2.5e-139 499.6 475 58.1
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 4.2e-139 498.8 496 56.9
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 4.2e-139 498.8 465 59.4
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 5.5e-139 498.4 479 57.0
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 9.4e-139 497.7 489 55.0
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 4.7e-138 495.4 507 54.8
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 1.8e-137 493.4 500 55.2
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 3.0e-137 492.7 470 56.8
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 6.8e-137 491.5 517 52.0
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 8.8e-137 491.1 473 56.0
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.2e-136 490.7 499 55.7
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 7.5e-136 488.0 493 54.6
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 7.5e-136 488.0 493 54.6
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 1.7e-135 486.9 489 55.6
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 2.8e-135 486.1 493 54.6
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 3.7e-135 485.7 504 53.6
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 3.7e-135 485.7 496 54.6
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.3e-135 485.0 485 55.3
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 1.8e-134 483.4 494 53.8
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 1.8e-134 483.4 494 53.8
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 2.4e-134 483.0 471 56.5
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 3.1e-134 482.6 493 54.6
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 9.1e-134 481.1 494 53.2
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 2.0e-133 479.9 484 55.0
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 5.0e-132 475.3 543 51.0
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 2.7e-130 469.5 477 57.0
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 8.0e-130 468.0 425 57.4
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 3.0e-129 466.1 425 56.9
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 3.4e-128 462.6 475 52.8
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 3.7e-127 459.1 530 50.2
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 1.1e-123 447.6 541 49.5
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 2.6e-120 436.4 503 51.3
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.9e-116 422.9 376 60.9
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 1.9e-115 420.2 498 51.0
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 1.9e-115 420.2 499 48.5
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 5.6e-115 418.7 387 56.8
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 6.4e-111 405.2 462 50.2
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 6.6e-108 395.2 483 49.5
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.5e-107 394.0 485 49.1
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 8.9e-105 384.8 399 52.1
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 3.9e-100 369.4 458 46.7
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 4.0e-97 359.4 440 45.9
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.5e-96 357.5 231 75.3
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 4.4e-96 355.9 263 68.1
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 6.6e-92 342.0 356 54.8
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 5.1e-84 315.8 237 64.1
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 5.1e-84 315.8 237 64.1
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.5e-83 313.5 215 78.1
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 1.8e-81 307.4 196 74.5
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 1.8e-81 307.4 196 74.5
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 3.2e-78 296.6 278 59.4
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.3e-68 263.8 158 86.7
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.0e-68 263.5 215 67.9
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 5.3e-65 252.7 176 69.3
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 2.2e-63 247.3 201 63.2
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 2.1e-61 240.7 322 44.4
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 3.9e-60 236.5 290 50.0
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 3.3e-59 233.4 174 66.7
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 2.1e-58 230.7 309 42.4
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 1.2e-56 224.9 312 42.6
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 3.3e-51 206.8 211 55.5
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 9.4e-46 188.7 264 47.7
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 6.1e-45 186.0 203 53.2
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 3.3e-43 180.3 163 55.8
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 6.3e-42 176.0 246 45.1
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 1.4e-36 158.3 142 59.2
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.7e-34 150.2 167 50.3
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 2.4e-33 147.5 145 53.1
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 2.9e-31 140.6 403 27.8
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.3e-26 125.2 130 50.8
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.2e-23 114.4 156 44.2
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.5e-23 112.8 100 54.0
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 4.0e-20 103.6 138 43.5
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 1.4e-17 95.1 55 80.0
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 1.2e-11 75.5 79 48.1
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 2.2e-10 71.2 267 28.1
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 3.5e-08 63.9 147 33.3
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 1.7e-07 61.6 47 53.2
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 6.6e-07 59.7 45 71.1


User provided reference genes

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