Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025394 Camellia sinensis var. sinensis HOM05D002800 ORTHO05D023340 9.0e-62 240.0 112 100.0
CSS0031142 Camellia sinensis var. sinensis HOM05D002800 ORTHO05D023340 3.8e-60 234.6 112 98.2
Dinv36436 Davidia involucrata HOM05D002800 ORTHO05D008563 3.4e-37 158.3 98 79.6
Actinidia32446 Actinidia chinensis HOM05D002800 ORTHO05D023340 3.2e-35 151.8 98 74.5
Haze_16886 Corylus avellana HOM05D002800 ORTHO05D008563 4.7e-34 147.9 99 70.7
GSVIVG01016267001 Vitis vinifera HOM05D002800 ORTHO05D008563 4.7e-34 147.9 98 72.4
vmacro04868 Vaccinium macrocarpon HOM05D002800 ORTHO05D023340 1.0e-33 146.7 103 68.0
Thecc.10G075100 Theobroma cacao HOM05D002800 ORTHO05D008563 9.7e-32 140.2 98 68.4
CiPaw.01G272300 Carya illinoinensis HOM05D002800 ORTHO05D008563 8.2e-31 137.1 99 66.7
Atru.chr12.783 Acer truncatum HOM05D002800 ORTHO05D008563 6.9e-30 134.0 98 64.3
TAR369G0845 Trochodendron aralioides HOM05D002800 ORTHO05D008563 9.1e-30 133.7 99 67.7
Prupe.2G213100 Prunus persica HOM05D002800 ORTHO05D008563 4.5e-29 131.3 97 64.9
QL08p055739 Quercus lobata HOM05D002800 ORTHO05D008563 4.5e-29 131.3 97 64.9
Atru.chr12.759 Acer truncatum HOM05D002800 ORTHO05D008563 5.9e-29 131.0 96 64.6
MD01G1108200 Malus domestica HOM05D002800 ORTHO05D008563 1.7e-28 129.4 97 64.9
Gorai.011G239000 Gossypium raimondii HOM05D002800 ORTHO05D008563 5.0e-28 127.9 98 65.3
Nn2g10811 Nelumbo nucifera HOM05D002800 ORTHO05D008563 8.5e-28 127.1 98 61.2
TWI15G0073 Tripterygium wilfordii HOM05D002800 ORTHO05D008563 1.1e-27 126.7 98 65.3
CANSAT56G2733 Cannabis sativa HOM05D002800 ORTHO05D008563 1.9e-27 125.9 98 64.3
ClCG08G007530 Citrullus lanatus HOM05D002800 ORTHO05D008563 4.2e-27 124.8 98 62.2
MBI07_g26016_MAGBIO Magnolia biondii HOM05D002800 ORTHO05D008563 7.2e-27 124.0 98 60.2
FvH4_7g19370 Fragaria vesca HOM05D002800 ORTHO05D008563 1.6e-26 122.9 97 61.9
FAN06G4795 Fragaria x ananassa HOM05D002800 ORTHO05D008563 1.6e-26 122.9 97 61.9
FAN10G1943 Fragaria x ananassa HOM05D002800 ORTHO05D008563 1.6e-26 122.9 97 61.9
FAN10G3729 Fragaria x ananassa HOM05D002800 ORTHO05D008563 1.6e-26 122.9 97 61.9
RcHm_v2.0_Chr1g0363251 Rosa chinensis HOM05D002800 ORTHO05D008563 3.6e-26 121.7 97 61.9
MELO3C019799.2 Cucumis melo HOM05D002800 ORTHO05D008563 4.7e-26 121.3 98 60.2
Lj1C913T2 Lonicera japonica HOM05D002800 ORTHO05D008563 4.7e-26 121.3 100 62.0
Duzib106G1770 Durio zibethinus HOM05D002800 ORTHO05D008563 5.2e-25 117.9 98 64.3
CsaV3_6G036460 Cucumis sativus L. HOM05D002800 ORTHO05D008563 2.6e-24 115.5 98 59.2
FAN03G0883 Fragaria x ananassa HOM05D002800 ORTHO05D008563 1.7e-23 112.8 97 57.7
SalBow4G0916 Salvia bowleyana HOM05D002800 ORTHO05D008563 1.7e-23 112.8 98 57.1
SGA_v2.0_scaffold42G16019 Striga asiatica HOM05D002800 ORTHO05D023340 1.7e-23 112.8 98 58.2
Lj5g0013059 Lotus japonicus HOM05D002800 ORTHO05D008563 1.1e-22 110.2 98 58.2
Migut.F01983 Erythranthe guttata HOM05D002800 ORTHO05D008563 4.1e-22 108.2 98 58.2
Nitab4.5_0001053g0090 Nicotiana tabacum HOM05D002800 ORTHO05D008563 5.3e-22 107.8 99 57.6
Eucgr.J01084 Eucalyptus grandis HOM05D002800 ORTHO05D008563 2.0e-21 105.9 97 53.6
PGR044G1821 Punica granatum HOM05D002800 ORTHO05D008563 2.6e-21 105.5 98 57.1
Lsat_1_v5_gn_2_112341 Lactuca sativa HOM05D002800 ORTHO05D008563 4.5e-21 104.8 106 55.7
Oeu031346.1 Olea europaea HOM05D002800 ORTHO05D008563 4.5e-21 104.8 96 55.2
ECA238G0500 Erigeron canadensis HOM05D002800 ORTHO05D008563 1.7e-20 102.8 94 58.5
Aqoxy1G01227 Aquilegia oxysepala HOM05D002800 ORTHO05D008563 2.2e-20 102.4 98 54.1
AUR62006403 Chenopodium quinoa HOM05D002800 ORTHO05D008563 2.2e-20 102.4 98 54.1
EL10Ac7g17090 Beta vulgaris HOM05D002800 ORTHO05D008563 5.0e-20 101.3 98 55.1
Hund20229 Selenicereus undatus HOM05D002800 ORTHO05D008563 1.1e-19 100.1 98 53.1
PGSC0003DMG400001912 Solanum tuberosum HOM05D002800 ORTHO05D008563 1.2e-18 96.7 98 54.1
arahy.Tifrunner.gnm1.ann1.681S5P Arachis hypogaea HOM05D002800 ORTHO05D008563 1.6e-18 96.3 117 51.3
Psat6g183400 Pisum sativum HOM05D002800 ORTHO05D008563 2.7e-18 95.5 98 49.0
Solyc04g005030.4 Solanum lycopersicum HOM05D002800 ORTHO05D008563 4.7e-18 94.7 98 53.1
TPR.G1920 Trifolium pratense HOM05D002800 ORTHO05D008563 4.7e-18 94.7 98 52.0
Cpa.g.sc53.86 Carica papaya HOM05D002800 ORTHO05D008563 8.0e-18 94.0 63 69.8
arahy.Tifrunner.gnm1.ann1.KPC10E Arachis hypogaea HOM05D002800 ORTHO05D008563 1.0e-17 93.6 101 52.5
Nitab4.5_0002524g0030 Nicotiana tabacum HOM05D002800 ORTHO05D008563 1.4e-17 93.2 97 52.6
HanXRQChr14g0456851 Helianthus annuus HOM05D002800 ORTHO05D008563 2.3e-17 92.4 98 52.0
Peaxi162Scf01011g00005 Petunia axillaris HOM05D002800 ORTHO05D008563 3.0e-17 92.0 99 51.5
CAN.G839.3 Capsicum annuum HOM05D002800 ORTHO05D008563 4.0e-17 91.7 98 51.0
Cc02_g11310 Coffea canephora HOM05D002800 ORTHO05D008563 4.0e-17 91.7 98 52.0
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 5.2e-17 91.3 98 52.0
Lalb_Chr02g0142211 Lupinus albus HOM05D002800 ORTHO05D008563 6.7e-17 90.9 99 51.5
Medtr1g094980 Medicago truncatula HOM05D002800 ORTHO05D008563 8.8e-17 90.5 98 50.0
THA.LOC104799379 Tarenaya hassleriana HOM05D002800 ORTHO05D008563 1.4e-14 83.2 96 47.9
Carub.0006s1576 Capsella rubella HOM05D002800 ORTHO05D008563 4.1e-14 81.6 97 45.4
ATR0048G007 Amborella trichopoda HOM05D002800 ORTHO05D008563 1.2e-13 80.1 73 53.4
Thhalv10012819m.g Eutrema salsugineum HOM05D002800 ORTHO05D008563 1.6e-13 79.7 107 43.0
Sp6g26690 Schrenkiella parvula HOM05D002800 ORTHO05D008563 4.5e-13 78.2 98 44.9
PSO339G3461 Papaver somniferum HOM05D002800 ORTHO05D008563 3.8e-12 75.1 102 47.1
CARHR195660 Cardamine hirsuta HOM05D002800 ORTHO05D008563 6.5e-12 74.3 99 43.4
Potri.010G223000 Populus trichocarpa HOM05D002800 ORTHO05D008563 6.5e-12 74.3 104 51.0
PSO384G1174 Papaver somniferum HOM05D002800 ORTHO05D008563 4.2e-11 71.6 104 47.1
BolC2t06825H Brassica oleracea HOM05D002800 ORTHO05D008563 8.0e-10 67.4 100 43.0
Glyma.10G210700 Glycine max HOM05D002800 ORTHO05D008563 8.0e-10 67.4 100 45.0
A02p04250 Brassica napus HOM05D002800 ORTHO05D008563 4.0e-09 65.1 97 40.2
BraA02t05388Z Brassica rapa HOM05D002800 ORTHO05D008563 4.0e-09 65.1 97 40.2
VMungo0720G2543 Vigna mungo HOM05D002800 ORTHO05D008563 5.2e-09 64.7 104 48.1
BcaC03g13525 Brassica carinata HOM05D002800 ORTHO05D008563 5.7e-08 61.2 100 41.0
C02p09130 Brassica napus HOM05D002800 ORTHO05D008563 1.3e-07 60.1 101 39.6
AL6G28620 Arabidopsis lyrata HOM05D002800 ORTHO05D008563 6.3e-07 57.8 63 47.6
Sabra10G0172400 Salix brachista HOM05D002800 ORTHO05D008563 1.1e-06 57.0 120 40.8


User provided reference genes

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