Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025382 Camellia sinensis var. sinensis HOM05D012118 ORTHO05D009908 0.0e+00 1286.6 627 100.0
Rhsim01G0207900 Rhododendron simsii HOM05D012118 ORTHO05D009908 1.7e-32 145.2 205 38.5
Dinv01242 Davidia involucrata HOM05D010363 ORTHO05D008693 2.4e-31 141.4 303 29.7
Hma1.2p1_0359F.1_g135000 Hydrangea macrophylla HOM05D000455 ORTHO05D000434 5.4e-31 140.2 339 27.7
Rhsim04G0161400 Rhododendron simsii HOM05D012118 ORTHO05D009908 4.6e-30 137.1 206 36.9
QL08p032772 Quercus lobata HOM05D022192 ORTHO05D009908 9.6e-20 102.8 183 33.3
Dinv06297 Davidia involucrata HOM05D010363 ORTHO05D008693 1.3e-19 102.4 469 25.4
QL10p051876 Quercus lobata HOM05D022192 ORTHO05D009908 8.1e-19 99.8 183 32.8
Rhsim03G0056000 Rhododendron simsii HOM05D012118 ORTHO05D009908 2.0e-17 95.1 141 37.6
QL09p039396 Quercus lobata HOM05D022192 ORTHO05D009908 4.5e-17 94.0 158 34.2
RhsimUnG0161200 Rhododendron simsii HOM05D012118 ORTHO05D009908 1.7e-16 92.0 136 37.5
RhsimUnG0178300 Rhododendron simsii HOM05D012118 ORTHO05D009908 1.7e-16 92.0 136 37.5
CSS0020947 Camellia sinensis var. sinensis HOM05D024541 ORTHO05D024705 2.2e-16 91.7 201 29.4
SGA_v2.0_scaffold74G24629 Striga asiatica HOM05D017631 ORTHO05D009908 6.4e-16 90.1 176 28.4
SGA_v2.0_scaffold540G52806 Striga asiatica HOM05D017631 ORTHO05D009908 1.9e-15 88.6 137 33.6
CSS0040705 Camellia sinensis var. sinensis HOM05D024541 ORTHO05D024705 3.2e-15 87.8 168 29.2
SGA_v2.0_scaffold81G26003 Striga asiatica HOM05D017631 ORTHO05D009908 2.7e-14 84.7 137 32.8
CSS0045207 Camellia sinensis var. sinensis HOM05D024541 ORTHO05D024705 2.3e-13 81.6 201 27.9
SGA_v2.0_scaffold142G35697 Striga asiatica HOM05D017631 ORTHO05D009908 3.0e-13 81.3 157 29.3
COL.COLO4_20373 Corchorus olitorius HOM05D007993 ORTHO05D000898 5.6e-12 77.0 537 21.0
Thecc.04G055800 Theobroma cacao HOM05D008451 ORTHO05D009908 1.6e-11 75.5 149 29.5
CANSAT64G0311 Cannabis sativa HOM05D009769 ORTHO05D010823 6.9e-10 70.1 179 27.4
RhsimUnG0173500 Rhododendron simsii HOM05D012118 ORTHO05D009908 6.9e-10 70.1 91 41.8
CANSAT01G0411 Cannabis sativa HOM05D009769 ORTHO05D010823 1.5e-09 68.9 178 27.0
GSVIVG01018225001 Vitis vinifera HOM05D008451 ORTHO05D009908 2.0e-09 68.6 150 24.0
GSVIVG01037305001 Vitis vinifera HOM05D008451 ORTHO05D009908 2.6e-09 68.2 150 24.0
GSVIVG01000313001 Vitis vinifera HOM05D008451 ORTHO05D009908 3.4e-09 67.8 149 24.2
GSVIVG01005673001 Vitis vinifera HOM05D008451 ORTHO05D009908 3.4e-09 67.8 150 24.0
GSVIVG01000319001 Vitis vinifera HOM05D008451 ORTHO05D009908 5.8e-09 67.0 150 23.3
GSVIVG01012273001 Vitis vinifera HOM05D008451 ORTHO05D009908 1.0e-08 66.2 151 23.8
CANSAT21G2496 Cannabis sativa HOM05D009769 ORTHO05D010823 1.3e-08 65.9 179 26.8
CANSAT78G1808 Cannabis sativa HOM05D009769 ORTHO05D010823 1.7e-08 65.5 192 26.0
Medtr5g022270 Medicago truncatula HOM05D009725 ORTHO05D007788 1.7e-08 65.5 180 30.0
GSVIVG01023574001 Vitis vinifera HOM05D008451 ORTHO05D009908 2.2e-08 65.1 150 23.3
GSVIVG01030359001 Vitis vinifera HOM05D008451 ORTHO05D009908 2.2e-08 65.1 150 23.3
GSVIVG01021857001 Vitis vinifera HOM05D008451 ORTHO05D009908 2.9e-08 64.7 151 23.8
GSVIVG01025899001 Vitis vinifera HOM05D008451 ORTHO05D009908 2.9e-08 64.7 154 23.4
Medtr4g040020 Medicago truncatula HOM05D009725 ORTHO05D007788 3.8e-08 64.3 191 28.3
Potri.017G018801 Populus trichocarpa HOM05D000455 ORTHO05D050471 3.8e-08 64.3 140 29.3
Rhsim02G0127200 Rhododendron simsii HOM05D011344 ORTHO05D016379 3.8e-08 64.3 149 29.5
GSVIVG01003489001 Vitis vinifera HOM05D008451 ORTHO05D009908 3.8e-08 64.3 150 23.3
GSVIVG01032145001 Vitis vinifera HOM05D008451 ORTHO05D009908 3.8e-08 64.3 151 23.2
MBI19_g36960_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 4.9e-08 63.9 107 29.9
Rhsim01G0048300 Rhododendron simsii HOM05D012118 ORTHO05D009908 4.9e-08 63.9 75 42.7
GSVIVG01034661001 Vitis vinifera HOM05D008451 ORTHO05D009908 4.9e-08 63.9 148 25.0
CANSAT25G3518 Cannabis sativa HOM05D009769 ORTHO05D010823 6.5e-08 63.5 179 25.7
GSVIVG01001944001 Vitis vinifera HOM05D008451 ORTHO05D009908 6.5e-08 63.5 150 23.3
Lj4g0026673 Lotus japonicus HOM05D011457 ORTHO05D007788 8.4e-08 63.2 94 34.0
Medtr2g022080 Medicago truncatula HOM05D009725 ORTHO05D007788 8.4e-08 63.2 180 29.4
Sabra17G0002200 Salix brachista HOM05D000063 ORTHO05D050471 8.4e-08 63.2 180 26.1
Dinv14202 Davidia involucrata HOM05D010363 ORTHO05D008693 1.1e-07 62.8 357 25.5
MBI13_g33565_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 1.1e-07 62.8 107 30.8
Dinv12717 Davidia involucrata HOM05D010363 ORTHO05D008693 1.9e-07 62.0 63 50.8
Lj2g0027504 Lotus japonicus HOM05D009725 ORTHO05D007788 1.9e-07 62.0 90 33.3
GSVIVG01038481001 Vitis vinifera HOM05D008451 ORTHO05D009908 1.9e-07 62.0 151 22.5
MBI17_g28664_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 2.5e-07 61.6 108 29.6
Thhalv10025061m.g Eutrema salsugineum HOM05D002639 ORTHO05D003094 3.2e-07 61.2 268 23.5
FAN05G1903 Fragaria x ananassa HOM05D017852 ORTHO05D010823 4.2e-07 60.8 146 28.8
MBI02_g32907_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 4.2e-07 60.8 105 31.4
MBI14_g18539_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 5.5e-07 60.5 107 31.8
MBI14_g41773_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 5.5e-07 60.5 138 29.7
GSVIVG01010705001 Vitis vinifera HOM05D008451 ORTHO05D009908 5.5e-07 60.5 150 23.3
GSVIVG01022672001 Vitis vinifera HOM05D008451 ORTHO05D009908 5.5e-07 60.5 151 21.9
GSVIVG01024189001 Vitis vinifera HOM05D008451 ORTHO05D009908 7.1e-07 60.1 151 22.5
MBI05_g05140_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 9.3e-07 59.7 107 30.8
MBI05_g10657_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 9.3e-07 59.7 80 31.2
GSVIVG01030778001 Vitis vinifera HOM05D008451 ORTHO05D009908 9.3e-07 59.7 148 23.0
Medtr4g007830 Medicago truncatula HOM05D011457 ORTHO05D007788 1.2e-06 59.3 188 23.9
Peaxi162Scf00498g00738 Petunia axillaris HOM05D002639 ORTHO05D003094 1.6e-06 58.9 277 20.9
Rhsim11G0015600 Rhododendron simsii HOM05D011344 ORTHO05D016379 1.6e-06 58.9 206 25.2
Lj5g0015857 Lotus japonicus HOM05D009725 ORTHO05D007788 2.1e-06 58.5 90 32.2
MBI15_g38814_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 2.7e-06 58.2 107 28.0
Rhsim04G0142500 Rhododendron simsii HOM05D012118 ORTHO05D009908 2.7e-06 58.2 65 43.1
CANSAT35G0260 Cannabis sativa HOM05D019351 ORTHO05D018844 4.6e-06 57.4 174 25.9
Solyc01g066830.3 Solanum lycopersicum HOM05D002639 ORTHO05D003094 4.6e-06 57.4 290 22.8
FAN27G2266 Fragaria x ananassa HOM05D017852 ORTHO05D010823 7.9e-06 56.6 180 24.4
Sopen01g028430 Solanum pennellii HOM05D002639 ORTHO05D003094 7.9e-06 56.6 290 22.8


User provided reference genes

Program Settings