Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025373 Camellia sinensis var. sinensis HOM05D000272 ORTHO05D000164 9.1e-108 393.7 210 100.0
vmacro11397 Vaccinium macrocarpon HOM05D000272 ORTHO05D000164 2.5e-65 252.7 220 69.1
Rhsim02G0234600 Rhododendron simsii HOM05D000272 ORTHO05D000164 3.6e-64 248.8 221 72.4
Ciclev10019130m.g Citrus clementina HOM05D000272 ORTHO05D000164 1.2e-62 243.8 222 65.3
CiPaw.12G090400 Carya illinoinensis HOM05D000272 ORTHO05D000164 3.8e-61 238.8 220 64.5
Potri.003G131300 Populus trichocarpa HOM05D000272 ORTHO05D000164 6.4e-61 238.0 219 63.9
Dinv38913 Davidia involucrata HOM05D000272 ORTHO05D000164 8.4e-61 237.7 219 68.0
CiPaw.11G132000 Carya illinoinensis HOM05D000272 ORTHO05D000164 2.4e-60 236.1 216 63.4
Prupe.5G104600 Prunus persica HOM05D000272 ORTHO05D000164 4.2e-60 235.3 230 63.0
Duzib205G0394 Durio zibethinus HOM05D000272 ORTHO05D000164 7.1e-60 234.6 218 63.8
QL12p032253 Quercus lobata HOM05D000272 ORTHO05D000164 1.2e-59 233.8 222 64.9
Sabra01G0075700 Salix brachista HOM05D000272 ORTHO05D000164 1.6e-59 233.4 219 63.0
Manes.01G058700 Manihot esculenta HOM05D000272 ORTHO05D000164 2.1e-59 233.0 218 63.3
Potri.001G100800 Populus trichocarpa HOM05D000272 ORTHO05D000164 4.6e-59 231.9 219 64.8
MD06G1088700 Malus domestica HOM05D000272 ORTHO05D000164 1.0e-58 230.7 221 63.3
Thecc.03G284000 Theobroma cacao HOM05D000272 ORTHO05D000164 2.3e-58 229.6 218 61.5
Manes.02G018700 Manihot esculenta HOM05D000272 ORTHO05D000164 3.0e-58 229.2 220 62.3
MD14G1109800 Malus domestica HOM05D000272 ORTHO05D000164 1.5e-57 226.9 221 61.1
Dinv37612 Davidia involucrata HOM05D000272 ORTHO05D000164 2.8e-56 222.6 222 65.3
TAR636G0981 Trochodendron aralioides HOM05D000272 ORTHO05D000164 6.2e-56 221.5 223 58.7
Duzib068G0644 Durio zibethinus HOM05D000272 ORTHO05D000164 8.1e-56 221.1 217 60.8
RcHm_v2.0_Chr7g0196921 Rosa chinensis HOM05D000272 ORTHO05D000164 4.0e-55 218.8 226 60.2
Gorai.008G248900 Gossypium raimondii HOM05D000272 ORTHO05D000164 2.6e-54 216.1 220 63.2
TAR629G1753 Trochodendron aralioides HOM05D000272 ORTHO05D000164 7.6e-54 214.5 223 62.8
Cfa012196 Carpinus fangiana HOM05D000272 ORTHO05D000164 2.2e-53 213.0 228 61.4
Haze_08821 Corylus avellana HOM05D000272 ORTHO05D000164 2.2e-53 213.0 230 64.8
Duzib084G0181 Durio zibethinus HOM05D000272 ORTHO05D000164 2.2e-53 213.0 218 60.1
Gohir.D12G232600 Gossypium hirsutum HOM05D000272 ORTHO05D000164 2.9e-53 212.6 220 62.7
PGR031G2387 Punica granatum HOM05D000272 ORTHO05D000164 3.8e-53 212.2 231 57.1
Gohir.A12G234500 Gossypium hirsutum HOM05D000272 ORTHO05D000164 4.9e-53 211.8 220 62.3
Sabra03G0093500 Salix brachista HOM05D000272 ORTHO05D000164 3.2e-52 209.1 220 59.5
Gorai.004G139300 Gossypium raimondii HOM05D000272 ORTHO05D000164 2.1e-51 206.5 223 58.3
Gohir.D08G136100 Gossypium hirsutum HOM05D000272 ORTHO05D000164 6.0e-51 204.9 223 57.8
FvH4_5g02960 Fragaria vesca HOM05D000272 ORTHO05D000164 8.7e-50 201.1 224 57.6
FAN18G3703 Fragaria x ananassa HOM05D000272 ORTHO05D000164 8.7e-50 201.1 224 57.6
Nn6g33323 Nelumbo nucifera HOM05D000272 ORTHO05D000164 1.9e-49 199.9 229 57.6
TAR374G1628 Trochodendron aralioides HOM05D000272 ORTHO05D000164 1.9e-49 199.9 223 52.5
LjContig00312_ERROPOS870357g0021416 Lotus japonicus HOM05D000272 ORTHO05D000164 4.3e-49 198.7 218 56.0
FAN13G1684 Fragaria x ananassa HOM05D000272 ORTHO05D000164 5.6e-49 198.4 224 57.6
FAN08G3001 Fragaria x ananassa HOM05D000272 ORTHO05D000164 9.6e-49 197.6 226 57.1
Gohir.A08G115500 Gossypium hirsutum HOM05D000272 ORTHO05D000164 1.6e-48 196.8 223 56.1
FAN04G2733 Fragaria x ananassa HOM05D000272 ORTHO05D000164 1.8e-47 193.4 226 57.5
Eucgr.D01826 Eucalyptus grandis HOM05D000272 ORTHO05D000164 2.4e-47 193.0 224 56.2
Atru.chr9.2144 Acer truncatum HOM05D000272 ORTHO05D000164 5.3e-47 191.8 229 61.6
Nitab4.5_0006540g0040 Nicotiana tabacum HOM05D000272 ORTHO05D000164 9.0e-47 191.0 231 53.2
Gohir.A03G020200 Gossypium hirsutum HOM05D000272 ORTHO05D000164 2.6e-46 189.5 212 61.8
Nitab4.5_0002282g0030 Nicotiana tabacum HOM05D000272 ORTHO05D000164 2.6e-46 189.5 231 51.9
Gohir.D03G148500 Gossypium hirsutum HOM05D000272 ORTHO05D000164 2.2e-45 186.4 212 60.8
Gorai.003G156000 Gossypium raimondii HOM05D000272 ORTHO05D000164 8.4e-45 184.5 212 60.8
CsaV3_5G002560 Cucumis sativus L. HOM05D000272 ORTHO05D000164 1.4e-44 183.7 240 52.9
DCAR_008361 Daucus carota HOM05D000272 ORTHO05D000164 9.3e-44 181.0 229 54.6
VMungo0251G0710 Vigna mungo HOM05D000272 ORTHO05D000164 6.0e-43 178.3 210 52.4
Phvul.002G159000 Phaseolus vulgaris HOM05D000272 ORTHO05D000164 7.9e-43 177.9 227 52.4
Glyma.01G221500 Glycine max HOM05D000272 ORTHO05D000164 2.3e-42 176.4 227 51.5
Lj2A181T46 Lonicera japonica HOM05D000272 ORTHO05D000164 3.9e-42 175.6 222 58.6
Glyma.11G022200 Glycine max HOM05D000272 ORTHO05D000164 5.1e-42 175.3 228 52.6
CSS0025445 Camellia sinensis var. sinensis HOM05D000272 ORTHO05D000164 4.3e-41 172.2 215 53.0
Peaxi162Scf00074g01922 Petunia axillaris HOM05D000272 ORTHO05D000164 2.8e-40 169.5 230 54.3
Aqoxy5G04079 Aquilegia oxysepala HOM05D000272 ORTHO05D000164 3.7e-40 169.1 224 55.4
Hund11447 Selenicereus undatus HOM05D000272 ORTHO05D000164 3.7e-40 169.1 225 53.3
MSTRG.25629 Avicennia marina HOM05D000272 ORTHO05D000164 8.1e-40 167.9 227 50.7
Phvul.002G292000 Phaseolus vulgaris HOM05D000272 ORTHO05D000164 1.1e-39 167.5 211 52.6
VMungo1215G3258 Vigna mungo HOM05D000272 ORTHO05D000164 1.1e-39 167.5 227 51.5
Sed0010193 Sechium edule HOM05D000272 ORTHO05D000164 1.8e-39 166.8 235 49.4
Lalb_Chr16g0390231 Lupinus albus HOM05D000272 ORTHO05D000164 2.2e-37 159.8 216 50.9
Cpa.g.sc180.21 Carica papaya HOM05D000272 ORTHO05D000164 2.9e-37 159.5 220 52.3
Glyma.08G016900 Glycine max HOM05D000272 ORTHO05D000164 2.9e-37 159.5 207 49.8
MSTRG.13856 Avicennia marina HOM05D000272 ORTHO05D000164 3.8e-37 159.1 224 47.3
Lalb_Chr09g0320881 Lupinus albus HOM05D000272 ORTHO05D000164 1.4e-36 157.1 228 47.4
ClCG01G002450 Citrullus lanatus HOM05D000272 ORTHO05D000164 4.2e-36 155.6 241 47.7
GSVIVG01019399001 Vitis vinifera HOM05D000272 ORTHO05D000164 1.2e-35 154.1 210 47.1
EL10Ac5g12812 Beta vulgaris HOM05D000272 ORTHO05D000164 3.5e-35 152.5 238 48.7
HanXRQChr13g0394741 Helianthus annuus HOM05D000272 ORTHO05D000164 4.6e-35 152.1 221 53.8
PSO170G1489 Papaver somniferum HOM05D000272 ORTHO05D000164 1.3e-34 150.6 229 50.2
Medtr8g098815 Medicago truncatula HOM05D000272 ORTHO05D000164 2.3e-34 149.8 226 47.8
unitig_46.g18545 Utricularia gibba HOM05D000272 ORTHO05D000164 2.3e-34 149.8 217 48.8
Lsat_1_v5_gn_6_4901 Lactuca sativa HOM05D000272 ORTHO05D000164 5.1e-34 148.7 216 52.3
Glyma.05G210300 Glycine max HOM05D000272 ORTHO05D000164 8.7e-34 147.9 209 47.8
Lalb_Chr05g0224591 Lupinus albus HOM05D000272 ORTHO05D000164 1.1e-33 147.5 221 46.2
AUR62019727 Chenopodium quinoa HOM05D000272 ORTHO05D000164 1.9e-33 146.7 238 49.2
unitig_37.g12241 Utricularia gibba HOM05D000272 ORTHO05D000164 1.9e-33 146.7 223 48.0
arahy.Tifrunner.gnm1.ann1.J72J6Q Arachis hypogaea HOM05D000272 ORTHO05D000164 7.4e-33 144.8 226 48.7
Oeu039156.1 Olea europaea HOM05D000272 ORTHO05D000164 7.4e-33 144.8 214 49.5
Actinidia14585 Actinidia chinensis HOM05D003450 ORTHO05D004150 9.6e-33 144.4 162 58.6
Lj4g0017369 Lotus japonicus HOM05D000272 ORTHO05D000164 1.3e-32 144.1 235 46.8
Lsat_1_v5_gn_3_6961 Lactuca sativa HOM05D000272 ORTHO05D000164 2.1e-32 143.3 217 49.3
TWI60G1542 Tripterygium wilfordii HOM05D000272 ORTHO05D000164 2.1e-32 143.3 226 49.1
PSO063G2877 Papaver somniferum HOM05D000272 ORTHO05D000164 8.2e-32 141.4 229 49.3
Sed0018584 Sechium edule HOM05D000272 ORTHO05D000164 8.2e-32 141.4 236 47.0
Sc22g0005400 Simmondsia chinensis HOM05D000272 ORTHO05D000164 1.4e-31 140.6 231 48.1
TWI81G0072 Tripterygium wilfordii HOM05D000272 ORTHO05D000164 1.4e-31 140.6 237 48.5
MSTRG.1850 Avicennia marina HOM05D000272 ORTHO05D000164 3.1e-31 139.4 224 44.6
ECA233G5462 Erigeron canadensis HOM05D000272 ORTHO05D000164 9.0e-31 137.9 220 50.9
SalBow8G3177 Salvia bowleyana HOM05D000272 ORTHO05D000164 1.2e-30 137.5 212 48.1
CANSAT21G1257 Cannabis sativa HOM05D000272 ORTHO05D000164 1.0e-29 134.4 252 46.0
Oeu031428.1 Olea europaea HOM05D000272 ORTHO05D000164 1.0e-29 134.4 121 64.5
Lalb_Chr05g0211721 Lupinus albus HOM05D000272 ORTHO05D000164 1.3e-29 134.0 225 44.4
SalBow8G1745 Salvia bowleyana HOM05D000272 ORTHO05D000164 2.9e-29 132.9 213 46.9
arahy.Tifrunner.gnm1.ann1.A5442N Arachis hypogaea HOM05D000272 ORTHO05D000164 6.5e-29 131.7 227 42.7
arahy.Tifrunner.gnm1.ann1.RDQ7NL Arachis hypogaea HOM05D000272 ORTHO05D000164 2.5e-28 129.8 226 48.7
Actinidia28360 Actinidia chinensis HOM05D000272 ORTHO05D000164 3.2e-28 129.4 146 55.5
Psat7g031320 Pisum sativum HOM05D000272 ORTHO05D000164 7.1e-28 128.3 230 47.8
CAN.G532.14 Capsicum annuum HOM05D000272 ORTHO05D000164 2.1e-27 126.7 226 46.0
arahy.Tifrunner.gnm1.ann1.RFW3PD Arachis hypogaea HOM05D000272 ORTHO05D000164 2.7e-27 126.3 226 41.6
Solyc08g081400.4 Solanum lycopersicum HOM05D000272 ORTHO05D000164 6.1e-27 125.2 229 46.7
HPP92_025627 Vanilla planifolia HOM05D000272 ORTHO05D000164 7.9e-27 124.8 217 42.9
PGSC0003DMG400012329 Solanum tuberosum HOM05D000272 ORTHO05D000164 1.8e-26 123.6 225 45.3
Sopen08g029720 Solanum pennellii HOM05D000272 ORTHO05D000164 6.7e-26 121.7 228 45.6
Ah.07g196530 Amaranthus hybridus HOM05D000272 ORTHO05D000164 9.7e-25 117.9 220 43.6
Ca_10941_v3 Cicer arietinum L. HOM05D000272 ORTHO05D000164 4.8e-24 115.5 221 41.2
SGA_v2.0_scaffold173G39152 Striga asiatica HOM05D000272 ORTHO05D000164 1.4e-23 114.0 217 42.9
Hma1.2p1_0216F.1_g090910 Hydrangea macrophylla HOM05D000272 ORTHO05D000164 5.3e-23 112.1 60 90.0
AUR62010720 Chenopodium quinoa HOM05D000272 ORTHO05D000164 1.0e-21 107.8 125 57.6
HanXRQChr06g0165981 Helianthus annuus HOM05D000272 ORTHO05D000164 1.0e-21 107.8 220 44.1
Aa31LG9G540 Aethionema arabicum HOM05D000272 ORTHO05D000164 3.8e-21 105.9 225 37.3
ECA246G0001 Erigeron canadensis HOM05D000272 ORTHO05D000164 1.9e-20 103.6 240 42.9
THA.LOC104817855 Tarenaya hassleriana HOM05D000272 ORTHO05D000164 4.2e-20 102.4 213 40.8
Migut.A00750 Erythranthe guttata HOM05D000272 ORTHO05D000164 7.2e-20 101.7 234 42.3
AT5G41410 Arabidopsis thaliana HOM05D000272 ORTHO05D000164 1.6e-19 100.5 215 40.5
THA.LOC104823595 Tarenaya hassleriana HOM05D000272 ORTHO05D000164 4.6e-19 99.0 216 39.8
AL7G48000 Arabidopsis lyrata HOM05D000272 ORTHO05D000164 7.9e-19 98.2 215 40.0
Thhalv10027690m.g Eutrema salsugineum HOM05D000272 ORTHO05D000164 1.5e-17 94.0 210 39.5
SHI07121 Sapria himalayana HOM05D000272 ORTHO05D000164 3.3e-17 92.8 228 39.0
CARHR212910 Cardamine hirsuta HOM05D000272 ORTHO05D000164 9.7e-17 91.3 214 40.7
Sp7g00540 Schrenkiella parvula HOM05D000272 ORTHO05D000164 4.1e-15 85.9 210 38.6
SpUn0010_0010 Schrenkiella parvula HOM05D000272 ORTHO05D000164 4.1e-15 85.9 210 38.6
Carub.0007s3407 Capsella rubella HOM05D000272 ORTHO05D000164 1.5e-14 84.0 227 38.3
BcaC02g08959 Brassica carinata HOM05D000272 ORTHO05D000164 2.6e-14 83.2 211 36.0
A04p14540 Brassica napus HOM05D000272 ORTHO05D000164 1.7e-13 80.5 210 34.8
BraA04t17099Z Brassica rapa HOM05D000272 ORTHO05D000164 1.7e-13 80.5 210 34.8
C04p48450 Brassica napus HOM05D000272 ORTHO05D000164 2.2e-13 80.1 210 34.8
BolC4t26437H Brassica oleracea HOM05D000272 ORTHO05D000164 2.2e-13 80.1 210 34.8
BcaB06g27622 Brassica carinata HOM05D000272 ORTHO05D000164 1.1e-12 77.8 210 35.7
BcaB02g07893 Brassica carinata HOM05D000272 ORTHO05D000164 4.2e-12 75.9 210 35.7
Oeu059563.1 Olea europaea HOM05D000272 ORTHO05D000164 3.9e-10 69.3 214 30.4
SGA_v2.0_scaffold521G52693 Striga asiatica HOM05D000272 ORTHO05D000164 7.4e-09 65.1 210 31.4
BcaC08g44530 Brassica carinata HOM05D000272 ORTHO05D000164 1.1e-07 61.2 210 31.9
arahy.Tifrunner.gnm1.ann1.H5T6QL Arachis hypogaea HOM05D000272 ORTHO05D000164 4.1e-07 59.3 72 50.0
arahy.Tifrunner.gnm1.ann1.PZI7WX Arachis hypogaea HOM05D000263 ORTHO05D009363 5.9e-06 55.5 76 50.0


User provided reference genes

Program Settings