Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025344 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 2.4e-82 308.9 171 100.0
CSS0032532 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 3.3e-71 271.9 173 89.6
Rhsim04G0081600 Rhododendron simsii HOM05D006899 ORTHO05D008566 6.0e-41 171.4 194 57.7
QL08p044873 Quercus lobata HOM05D006899 ORTHO05D008566 1.5e-39 166.8 195 56.9
vmacro09192 Vaccinium macrocarpon HOM05D006899 ORTHO05D008566 5.6e-39 164.9 191 56.0
Potri.005G204200 Populus trichocarpa HOM05D006899 ORTHO05D008566 1.3e-38 163.7 179 59.2
Gohir.D07G086300 Gossypium hirsutum HOM05D006899 ORTHO05D008566 1.6e-38 163.3 180 56.7
Gorai.001G092300 Gossypium raimondii HOM05D006899 ORTHO05D008566 2.1e-38 162.9 180 56.1
Gohir.A07G080700 Gossypium hirsutum HOM05D006899 ORTHO05D008566 2.8e-38 162.5 180 56.7
Nitab4.5_0001883g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 6.2e-38 161.4 191 57.1
MD09G1149700 Malus domestica HOM05D006899 ORTHO05D008566 8.1e-38 161.0 194 55.2
GSVIVG01020847001 Vitis vinifera HOM05D006899 ORTHO05D008566 1.1e-37 160.6 177 58.2
CiPaw.04G138700 Carya illinoinensis HOM05D006899 ORTHO05D008566 4.0e-37 158.7 194 57.2
Nitab4.5_0002251g0050 Nicotiana tabacum HOM05D006899 ORTHO05D008566 5.3e-37 158.3 191 56.0
MD17G1136600 Malus domestica HOM05D006899 ORTHO05D008566 6.9e-37 157.9 196 52.6
Oeu020934.1 Olea europaea HOM05D006899 ORTHO05D008566 1.5e-36 156.8 189 54.5
Oeu013822.1 Olea europaea HOM05D006899 ORTHO05D008566 2.6e-36 156.0 168 57.7
Potri.002G058000 Populus trichocarpa HOM05D006899 ORTHO05D008566 9.9e-36 154.1 195 54.9
Prupe.3G176400 Prunus persica HOM05D006899 ORTHO05D008566 1.7e-35 153.3 135 65.9
Cfa023072 Carpinus fangiana HOM05D006899 ORTHO05D008566 3.8e-35 152.1 180 56.7
TWI59G0652 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 3.8e-35 152.1 184 56.5
COL.COLO4_08896 Corchorus olitorius HOM05D006899 ORTHO05D008566 4.9e-35 151.8 164 58.5
Peaxi162Scf00111g00221 Petunia axillaris HOM05D006899 ORTHO05D008566 4.9e-35 151.8 190 55.3
PGSC0003DMG400017304 Solanum tuberosum HOM05D006899 ORTHO05D008566 2.4e-34 149.4 186 56.5
Thecc.01G170200 Theobroma cacao HOM05D006899 ORTHO05D008566 4.2e-34 148.7 176 56.2
PGR042G1005 Punica granatum HOM05D006899 ORTHO05D008566 7.1e-34 147.9 162 59.3
TAR627G0648 Trochodendron aralioides HOM05D006899 ORTHO05D008566 9.3e-34 147.5 176 52.3
Sabra02G0047300 Salix brachista HOM05D006899 ORTHO05D008566 1.6e-33 146.7 195 53.3
FAN09G4704 Fragaria x ananassa HOM05D006899 ORTHO05D008566 2.7e-33 146.0 179 54.2
Cc05_g09700 Coffea canephora HOM05D006899 ORTHO05D008566 3.5e-33 145.6 185 53.5
Ciclev10032884m.g Citrus clementina HOM05D006899 ORTHO05D008566 4.6e-33 145.2 185 51.9
Nn4g26539 Nelumbo nucifera HOM05D006899 ORTHO05D008566 6.0e-33 144.8 176 56.2
FAN05G4631 Fragaria x ananassa HOM05D006899 ORTHO05D008566 7.8e-33 144.4 178 52.8
FvH4_6g38570 Fragaria vesca HOM05D006899 ORTHO05D008566 1.7e-32 143.3 179 53.1
Eucgr.A02015 Eucalyptus grandis HOM05D006899 ORTHO05D008566 2.3e-32 142.9 151 58.3
Solyc07g056240.3 Solanum lycopersicum HOM05D006899 ORTHO05D008566 3.0e-32 142.5 187 55.1
Haze_13530 Corylus avellana HOM05D006899 ORTHO05D008566 5.1e-32 141.7 215 50.7
Sopen07g029600 Solanum pennellii HOM05D006899 ORTHO05D008566 6.6e-32 141.4 141 63.1
Duzib138G0065 Durio zibethinus HOM05D006899 ORTHO05D008566 3.3e-31 139.0 185 53.0
SGA_v2.0_scaffold4G02123 Striga asiatica HOM05D006899 ORTHO05D008566 3.3e-31 139.0 148 56.1
VMungo0647G1903 Vigna mungo HOM05D006899 ORTHO05D008566 3.3e-31 139.0 187 50.3
Glyma.02G285100 Glycine max HOM05D006899 ORTHO05D008566 5.6e-31 138.3 189 51.9
Phvul.008G193700 Phaseolus vulgaris HOM05D006899 ORTHO05D008566 5.6e-31 138.3 188 50.5
arahy.Tifrunner.gnm1.ann1.226PX6 Arachis hypogaea HOM05D006899 ORTHO05D008566 7.3e-31 137.9 190 52.1
MSTRG.12841 Avicennia marina HOM05D006899 ORTHO05D008566 7.3e-31 137.9 189 50.3
Manes.10G088300 Manihot esculenta HOM05D006899 ORTHO05D008566 1.3e-30 137.1 196 51.5
Actinidia03641 Actinidia chinensis HOM05D006899 ORTHO05D008566 1.6e-30 136.7 126 68.3
FAN02G3475 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.6e-30 136.7 125 61.6
FAN14G2046 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.6e-30 136.7 125 61.6
LjContig00049g0021241 Lotus japonicus HOM05D006899 ORTHO05D008566 2.1e-30 136.3 188 51.1
Sp4g25100 Schrenkiella parvula HOM05D006899 ORTHO05D008566 2.1e-30 136.3 146 61.0
TPR.G12679 Trifolium pratense HOM05D006899 ORTHO05D008566 2.1e-30 136.3 148 58.1
arahy.Tifrunner.gnm1.ann1.SNQ1P9 Arachis hypogaea HOM05D006899 ORTHO05D008566 3.6e-30 135.6 190 51.1
Cpa.g.sc50.104 Carica papaya HOM05D006899 ORTHO05D008566 3.6e-30 135.6 131 63.4
Aa31LG1G24750 Aethionema arabicum HOM05D006899 ORTHO05D008566 4.8e-30 135.2 135 60.0
SalBow7G1887 Salvia bowleyana HOM05D006899 ORTHO05D008566 6.2e-30 134.8 192 49.5
Atru.chr6.2058 Acer truncatum HOM05D006899 ORTHO05D008566 8.1e-30 134.4 185 48.1
Glyma.14G029700 Glycine max HOM05D006899 ORTHO05D008566 8.1e-30 134.4 173 53.2
Sed0025977 Sechium edule HOM05D006899 ORTHO05D008566 8.1e-30 134.4 148 56.1
MELO3C026968.2 Cucumis melo HOM05D006899 ORTHO05D008566 1.1e-29 134.0 138 59.4
BcaC02g07213 Brassica carinata HOM05D006899 ORTHO05D008566 2.4e-29 132.9 145 57.2
C04p70000 Brassica napus HOM05D006899 ORTHO05D008566 2.4e-29 132.9 145 57.2
BolC4t28500H Brassica oleracea HOM05D006899 ORTHO05D008566 2.4e-29 132.9 145 57.2
CsaV3_4G031920 Cucumis sativus L. HOM05D006899 ORTHO05D008566 2.4e-29 132.9 138 58.7
RcHm_v2.0_Chr2g0151981 Rosa chinensis HOM05D006899 ORTHO05D008566 6.9e-29 131.3 167 52.7
Medtr5g091190 Medicago truncatula HOM05D006899 ORTHO05D008566 9.0e-29 131.0 148 57.4
CANSAT64G2357 Cannabis sativa HOM05D006899 ORTHO05D008566 1.2e-28 130.6 141 57.4
AT2G42975 Arabidopsis thaliana HOM05D006899 ORTHO05D008566 3.4e-28 129.0 121 65.3
Dinv09142 Davidia involucrata HOM05D006899 ORTHO05D008566 7.6e-28 127.9 168 52.4
BraA04t18701Z Brassica rapa HOM05D006899 ORTHO05D008566 9.9e-28 127.5 151 55.6
CARHR138030 Cardamine hirsuta HOM05D006899 ORTHO05D008566 3.8e-27 125.6 131 59.5
ClCG11G016470 Citrullus lanatus HOM05D006899 ORTHO05D008566 3.8e-27 125.6 148 52.0
AL4G41610 Arabidopsis lyrata HOM05D006899 ORTHO05D008566 4.9e-27 125.2 121 62.8
Migut.E01772 Erythranthe guttata HOM05D006899 ORTHO05D008566 4.9e-27 125.2 190 47.9
Thhalv10017256m.g Eutrema salsugineum HOM05D006899 ORTHO05D008566 8.4e-27 124.4 123 62.6
Sc13g0007020 Simmondsia chinensis HOM05D006899 ORTHO05D008566 1.9e-26 123.2 151 55.0
THA.LOC104802283 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 1.9e-26 123.2 143 51.7
Carub.0004s2544 Capsella rubella HOM05D006899 ORTHO05D008566 3.2e-26 122.5 123 61.8
Hund24233 Selenicereus undatus HOM05D006899 ORTHO05D008566 3.2e-26 122.5 197 44.7
THA.LOC104803370 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 3.2e-26 122.5 138 55.8
BcaB06g29274 Brassica carinata HOM05D006899 ORTHO05D008566 4.2e-26 122.1 124 61.3
BNapus_Darmor_BZH_scaffold_64p00160 Brassica napus HOM05D006899 ORTHO05D008566 5.4e-26 121.7 122 62.3
MBI10_g21113_MAGBIO Magnolia biondii HOM05D006899 ORTHO05D008566 4.6e-25 118.6 130 58.5
Aqoxy1G02918 Aquilegia oxysepala HOM05D006899 ORTHO05D008566 2.3e-24 116.3 140 57.1
ECA233G0523 Erigeron canadensis HOM05D006899 ORTHO05D008566 2.3e-24 116.3 123 56.1
HanXRQChr17g0554721 Helianthus annuus HOM05D006899 ORTHO05D008566 1.5e-23 113.6 134 52.2
EL10Ac9g22843 Beta vulgaris HOM05D006899 ORTHO05D008566 2.5e-23 112.8 154 53.9
AUR62015134 Chenopodium quinoa HOM05D006899 ORTHO05D008566 3.3e-23 112.5 155 53.5
Duzib133G1045 Durio zibethinus HOM05D006899 ORTHO05D008566 1.6e-22 110.2 172 44.8
Lsat_1_v5_gn_8_137860 Lactuca sativa HOM05D006899 ORTHO05D008566 1.6e-22 110.2 140 49.3
AUR62017595 Chenopodium quinoa HOM05D006899 ORTHO05D008566 1.5e-20 103.6 157 50.3
Lalb_Chr04g0248871 Lupinus albus HOM05D006899 ORTHO05D008566 4.5e-20 102.1 98 59.2
Ah.01g013620 Amaranthus hybridus HOM05D006899 ORTHO05D008566 1.7e-19 100.1 102 60.8
CDE05G0801 Ceratophyllum demersum HOM05D006899 ORTHO05D008566 2.9e-19 99.4 124 51.6
Os01g0666600 Oryza sativa ssp. japonica HOM05D006899 ORTHO05D008566 6.5e-19 98.2 128 49.2
Lj1P601T16 Lonicera japonica HOM05D006899 ORTHO05D008566 8.4e-19 97.8 87 62.1
TWI23G0441 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 2.5e-18 96.3 121 55.4
PSO478G1301 Papaver somniferum HOM05D006899 ORTHO05D008566 7.1e-18 94.7 149 48.3
PSO675G8667 Papaver somniferum HOM05D006899 ORTHO05D008566 7.1e-18 94.7 149 48.3
Zm00001eb157430 Zea mays HOM05D006899 ORTHO05D008566 3.5e-17 92.4 132 44.7
Nitab4.5_0002251g0080 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.3e-16 90.5 84 60.7
ATR0585G139 Amborella trichopoda HOM05D006899 ORTHO05D008566 3.3e-15 85.9 123 48.0
HPP92_010055 Vanilla planifolia HOM05D006899 ORTHO05D008566 1.6e-14 83.6 121 47.1
PSO541G6147 Papaver somniferum HOM05D006899 ORTHO05D008566 1.8e-13 80.1 125 49.6
unitig_60.g25592 Utricularia gibba HOM05D006899 ORTHO05D008566 3.1e-13 79.3 143 44.1
Hund24244 Selenicereus undatus HOM05D006899 ORTHO05D008566 7.1e-10 68.2 85 50.6
Nitab4.5_0004243g0030 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.6e-09 67.0 82 51.2
Mapoly0120s0054 Marchantia polymorpha HOM05D006899 ORTHO05D008566 1.8e-08 63.5 139 37.4
Pp3c13_6560 Physcomitrium patens HOM05D006899 ORTHO05D008566 1.5e-07 60.5 148 33.1
Nitab4.5_0004950g0010 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.9e-07 60.1 80 50.0
Nitab4.5_0009604g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.9e-07 60.1 80 50.0
Medtr7g035145 Medicago truncatula HOM05D006899 ORTHO05D008566 4.8e-06 55.5 37 64.9


User provided reference genes

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