Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.6e-214 748.4 379 100.0
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.3e-207 724.2 368 99.5
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.7e-202 707.2 379 95.3
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.6e-198 696.0 379 93.9
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.1e-191 671.8 379 92.1
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.8e-183 646.0 383 89.3
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.4e-159 564.7 413 76.8
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.8e-158 560.8 379 80.5
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.9e-151 539.7 413 70.9
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 8.9e-146 520.8 416 67.8
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.2e-144 516.2 386 74.9
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 4.6e-142 508.4 413 67.8
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 5.1e-141 505.0 413 65.6
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.1e-138 497.3 409 65.5
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 1.5e-137 493.4 412 64.6
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.6e-137 492.7 374 74.1
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 3.4e-137 492.3 411 64.5
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 7.6e-137 491.1 412 64.1
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.9e-135 486.5 411 63.3
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 2.4e-135 486.1 416 61.8
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 3.2e-135 485.7 509 55.2
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 3.5e-134 482.3 365 71.5
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 3.5e-134 482.3 365 71.5
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 5.1e-133 478.4 408 63.7
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 5.1e-133 478.4 413 62.2
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 5.6e-132 474.9 413 62.5
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 9.6e-132 474.2 416 61.5
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 4.8e-131 471.9 413 63.0
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 2.6e-129 466.1 413 62.0
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 4.9e-128 461.8 412 60.9
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 4.9e-128 461.8 412 60.7
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.9e-127 459.9 411 59.9
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 3.2e-127 459.1 412 60.2
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 7.9e-126 454.5 411 61.1
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 7.4e-124 448.0 411 60.8
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 2.1e-123 446.4 416 60.3
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 3.7e-123 445.7 413 58.4
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 6.2e-123 444.9 411 60.8
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 1.8e-122 443.4 412 58.7
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 4.0e-122 442.2 412 58.5
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 6.9e-122 441.4 413 58.6
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 9.0e-122 441.0 413 59.1
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 9.0e-122 441.0 407 57.2
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 9.0e-122 441.0 415 57.1
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 2.6e-121 439.5 367 66.2
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 1.7e-120 436.8 411 58.2
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 2.2e-120 436.4 373 62.7
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 2.2e-120 436.4 407 56.0
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 8.4e-120 434.5 412 57.0
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 1.1e-119 434.1 411 58.6
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 1.4e-119 433.7 407 55.5
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 3.2e-119 432.6 408 56.4
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 4.2e-119 432.2 427 55.5
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 9.3e-119 431.0 413 56.9
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 1.6e-118 430.3 415 55.7
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 2.1e-118 429.9 411 57.2
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 7.9e-118 427.9 410 56.3
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 1.3e-117 427.2 412 55.8
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 1.8e-117 426.8 409 55.5
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 2.3e-117 426.4 413 56.9
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 2.3e-117 426.4 413 55.4
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 2.3e-117 426.4 410 56.1
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 6.7e-117 424.9 413 56.7
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 1.1e-116 424.1 407 54.3
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 1.9e-116 423.3 412 57.3
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 4.3e-116 422.2 412 57.3
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.3e-115 420.6 412 56.8
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 1.3e-115 420.6 376 59.3
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 1.6e-115 420.2 409 56.2
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 2.8e-115 419.5 413 56.7
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 2.8e-115 419.5 400 58.0
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 3.7e-115 419.1 416 56.7
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 3.7e-115 419.1 453 52.1
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 4.8e-115 418.7 407 55.3
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 1.8e-114 416.8 413 55.9
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 4.0e-114 415.6 413 55.9
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 1.2e-113 414.1 411 55.2
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 2.0e-113 413.3 414 55.6
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 2.9e-112 409.5 412 54.9
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 6.5e-112 408.3 412 54.9
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 8.4e-112 407.9 416 55.0
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 1.1e-111 407.5 412 55.3
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 1.9e-111 406.8 416 54.3
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 7.1e-111 404.8 413 53.5
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 1.6e-110 403.7 412 53.9
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 3.5e-110 402.5 412 53.6
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 4.6e-110 402.1 373 58.2
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 5.1e-109 398.7 374 57.8
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 1.9e-108 396.7 407 52.6
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.9e-108 396.7 411 52.8
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 3.3e-108 396.0 407 52.6
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 3.3e-108 396.0 407 52.8
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 1.6e-107 393.7 423 52.5
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 6.3e-107 391.7 414 53.9
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 6.3e-107 391.7 420 52.9
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 8.2e-107 391.3 411 53.5
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.4e-103 380.6 416 53.1
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 9.3e-103 377.9 416 52.2
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 3.0e-101 372.9 440 49.3
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 1.5e-100 370.5 440 49.1
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 2.5e-100 369.8 413 51.6
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 5.7e-100 368.6 413 51.3
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.6e-97 359.8 420 50.2
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 7.2e-95 351.7 413 49.9
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 6.1e-94 348.6 430 48.6
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 1.8e-93 347.1 272 66.5
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 3.9e-93 345.9 367 51.2
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 3.9e-93 345.9 380 51.6
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 8.8e-93 344.7 404 50.5
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 4.4e-92 342.4 371 49.6
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 4.1e-90 335.9 374 50.5
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.5e-89 334.0 421 45.4
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 2.6e-89 333.2 366 48.9
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 4.2e-87 325.9 325 52.6
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 1.5e-84 317.4 266 62.4
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 4.8e-83 312.4 338 52.7
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 1.2e-81 307.8 413 46.0
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 3.0e-69 266.5 243 57.6
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.1e-62 243.8 225 59.1
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 1.4e-61 241.1 235 54.5
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 5.7e-60 235.7 225 58.2
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 2.4e-58 230.3 252 51.6
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 3.0e-53 213.4 206 57.8
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 3.2e-50 203.4 234 49.1
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 5.2e-45 186.0 238 45.4
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 2.0e-44 184.1 363 31.7
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 4.4e-44 183.0 412 33.0
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 5.4e-42 176.0 356 31.2
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.7e-35 154.5 135 64.4
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.9e-34 151.0 97 74.2
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 8.1e-30 135.6 239 31.0
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 1.8e-29 134.4 174 46.6
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 4.4e-28 129.8 397 26.2
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 3.8e-27 126.7 89 70.8
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 4.9e-27 126.3 141 47.5
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 1.2e-22 111.7 148 45.9
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 8.1e-22 109.0 289 26.3
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 9.9e-20 102.1 121 50.4
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 3.2e-18 97.1 107 48.6
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 5.8e-12 76.3 85 44.7
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 7.6e-12 75.9 96 39.6
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.4e-10 71.6 65 53.8
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.0e-08 65.5 43 67.4
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.0e-08 65.5 43 67.4
Gohir.D12G165066 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.9e-08 63.5 55 54.5
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 6.7e-08 62.8 68 47.1
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 6.7e-08 62.8 68 47.1
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 7.4e-07 59.3 68 45.6
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 7.4e-07 59.3 37 75.7
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 1.3e-06 58.5 93 39.8


User provided reference genes

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