Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 3.9e-76 288.1 153 100.0
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 2.7e-61 238.8 155 85.2
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 5.9e-56 221.1 154 79.2
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 3.8e-47 191.8 155 69.7
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 6.5e-47 191.0 159 69.2
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 1.1e-46 190.3 152 70.4
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 1.1e-46 190.3 156 69.2
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.9e-46 189.5 160 68.8
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 2.7e-45 185.7 149 67.1
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 3.6e-45 185.3 151 68.2
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 3.0e-44 182.2 141 70.9
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 8.8e-44 180.6 153 66.0
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 1.2e-43 180.3 152 65.8
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 1.5e-43 179.9 141 67.4
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 2.0e-43 179.5 142 68.3
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 2.0e-43 179.5 144 67.4
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 2.0e-43 179.5 152 63.2
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 4.4e-43 178.3 156 64.7
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 4.4e-43 178.3 154 64.3
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 4.4e-43 178.3 151 65.6
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 5.7e-43 177.9 141 67.4
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 9.8e-43 177.2 151 63.6
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 1.7e-42 176.4 151 65.6
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 2.2e-42 176.0 157 65.6
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 2.2e-42 176.0 142 64.1
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 2.2e-42 176.0 152 63.2
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 2.8e-42 175.6 153 64.7
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 3.7e-42 175.3 147 66.7
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 4.9e-42 174.9 141 63.8
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 6.3e-42 174.5 152 61.8
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 6.3e-42 174.5 158 62.7
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 6.3e-42 174.5 158 62.7
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 6.3e-42 174.5 141 65.2
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 8.3e-42 174.1 154 61.0
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 1.4e-41 173.3 155 61.3
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 1.4e-41 173.3 151 62.3
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 3.1e-41 172.2 143 64.3
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 3.1e-41 172.2 141 66.7
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 3.1e-41 172.2 151 61.6
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 4.1e-41 171.8 153 60.8
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 4.1e-41 171.8 152 60.5
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 4.1e-41 171.8 153 64.1
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 4.1e-41 171.8 141 65.2
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 4.1e-41 171.8 153 62.7
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 7.0e-41 171.0 151 62.9
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 9.2e-41 170.6 149 61.7
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 9.2e-41 170.6 141 65.2
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 9.2e-41 170.6 141 63.8
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 1.2e-40 170.2 145 62.8
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 1.2e-40 170.2 153 63.4
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 1.2e-40 170.2 157 61.8
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 1.6e-40 169.9 153 60.1
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 1.6e-40 169.9 151 60.9
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 2.7e-40 169.1 141 63.1
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 4.5e-40 168.3 141 65.2
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 5.9e-40 167.9 161 58.4
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 5.9e-40 167.9 139 67.6
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 5.9e-40 167.9 153 60.1
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 7.7e-40 167.5 153 60.8
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 1.3e-39 166.8 151 61.6
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 1.3e-39 166.8 149 61.1
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 1.7e-39 166.4 149 61.7
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 3.8e-39 165.2 147 63.3
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 5.0e-39 164.9 152 61.2
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 6.6e-39 164.5 154 60.4
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 1.1e-38 163.7 154 59.7
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 1.1e-38 163.7 143 62.9
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 1.5e-38 163.3 150 57.3
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 1.5e-38 163.3 142 62.0
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 1.9e-38 162.9 148 59.5
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 1.9e-38 162.9 149 59.7
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 2.5e-38 162.5 145 62.8
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 3.3e-38 162.2 141 62.4
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 3.3e-38 162.2 141 62.4
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 3.3e-38 162.2 149 58.4
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 4.3e-38 161.8 146 65.1
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 5.6e-38 161.4 146 65.1
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 9.5e-38 160.6 143 60.1
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 1.2e-37 160.2 157 56.7
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 1.2e-37 160.2 149 59.7
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 2.8e-37 159.1 157 63.1
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 6.1e-37 157.9 149 57.7
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 1.0e-36 157.1 151 57.6
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 1.8e-36 156.4 151 58.9
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 6.8e-36 154.5 145 62.8
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 8.9e-36 154.1 139 64.0
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 3.4e-35 152.1 152 59.2
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 9.8e-35 150.6 150 56.7
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 9.8e-35 150.6 150 56.7
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 3.7e-34 148.7 145 58.6
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 4.9e-34 148.3 153 58.8
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 1.4e-33 146.7 149 56.4
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 9.2e-33 144.1 149 55.7
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 1.2e-32 143.7 141 58.2
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 1.3e-31 140.2 144 56.9
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 3.9e-31 138.7 151 54.3
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 8.6e-31 137.5 151 54.3
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 1.1e-30 137.1 158 51.9
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 1.1e-30 137.1 133 60.9
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 3.3e-30 135.6 141 56.0
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 3.3e-30 135.6 148 54.7
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 2.8e-29 132.5 158 49.4
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 4.7e-29 131.7 84 77.4
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 8.0e-29 131.0 149 56.4
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 2.2e-26 122.9 151 51.7
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 3.3e-22 109.0 153 47.7
ClCG03G010310 Citrullus lanatus HOM05D005786 ORTHO05D006946 2.1e-21 106.3 114 58.8
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 2.3e-20 102.8 151 43.0
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 2.3e-20 102.8 75 66.7
Oeu040717.1 Olea europaea HOM05D005786 ORTHO05D006946 2.0e-19 99.8 98 64.3
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 4.4e-19 98.6 57 86.0
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 2.2e-18 96.3 86 58.1
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 6.4e-18 94.7 147 41.5
CARHR216470 Cardamine hirsuta HOM05D005786 ORTHO05D006946 1.2e-16 90.5 85 58.8
Ah.04g159110 Amaranthus hybridus HOM05D005786 ORTHO05D006946 8.6e-15 84.3 93 53.8
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 7.3e-14 81.3 83 51.8
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 1.6e-13 80.1 57 63.2
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 2.1e-13 79.7 147 36.7
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 4.7e-13 78.6 149 34.9
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 3.1e-12 75.9 154 32.5
BolC2t08267H Brassica oleracea HOM05D005786 ORTHO05D006946 2.0e-11 73.2 76 55.3
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 1.9e-09 66.6 48 62.5
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 6.6e-07 58.2 62 50.0


User provided reference genes

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