Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025306 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D033870 1.2e-112 409.8 205 100.0
CSS0018269 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D033870 3.6e-109 398.3 205 98.0
Dinv36486 Davidia involucrata HOM05D003717 ORTHO05D004848 7.9e-40 167.9 137 65.0
CSS0041787 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D004848 1.8e-39 166.8 137 66.4
Lj7A427G45 Lonicera japonica HOM05D003717 ORTHO05D004848 3.9e-39 165.6 138 63.8
vmacro06150 Vaccinium macrocarpon HOM05D003717 ORTHO05D004848 6.7e-39 164.9 137 65.7
Rhsim01G0064300 Rhododendron simsii HOM05D003717 ORTHO05D004848 4.8e-37 158.7 141 62.4
Duzib168G1487 Durio zibethinus HOM05D003717 ORTHO05D004848 7.0e-36 154.8 137 62.8
TAR636G2912 Trochodendron aralioides HOM05D003717 ORTHO05D004848 1.5e-33 147.1 140 57.9
Cc06_g08140 Coffea canephora HOM05D003717 ORTHO05D004848 2.5e-33 146.4 139 56.1
DCAR_014898 Daucus carota HOM05D003717 ORTHO05D004848 2.5e-33 146.4 138 58.0
vmacro07715 Vaccinium macrocarpon HOM05D003717 ORTHO05D004848 4.2e-33 145.6 141 61.7
TAR625G0037 Trochodendron aralioides HOM05D003717 ORTHO05D004848 9.4e-33 144.4 137 56.2
GSVIVG01015579001 Vitis vinifera HOM05D003717 ORTHO05D004848 2.7e-32 142.9 165 52.1
COL.COLO4_35140 Corchorus olitorius HOM05D003717 ORTHO05D004848 4.7e-32 142.1 138 60.1
Prupe.7G247700 Prunus persica HOM05D003717 ORTHO05D004848 8.0e-32 141.4 137 57.7
Solyc12g009610.2 Solanum lycopersicum HOM05D003717 ORTHO05D004848 2.3e-31 139.8 137 54.0
Haze_25522 Corylus avellana HOM05D003717 ORTHO05D004848 3.0e-31 139.4 139 59.0
QL02p089699 Quercus lobata HOM05D003717 ORTHO05D004848 2.0e-30 136.7 137 57.7
Duzib187G1288 Durio zibethinus HOM05D003717 ORTHO05D004848 3.3e-30 136.0 140 55.0
Manes.06G048400 Manihot esculenta HOM05D003717 ORTHO05D004848 3.3e-30 136.0 137 56.9
MD02G1027400 Malus domestica HOM05D003717 ORTHO05D004848 7.5e-30 134.8 137 56.2
CAN.G551.81 Capsicum annuum HOM05D003717 ORTHO05D004848 1.3e-29 134.0 137 52.6
Peaxi162Scf00313g00819 Petunia axillaris HOM05D003717 ORTHO05D004848 1.7e-29 133.7 137 54.0
Cfa003414 Carpinus fangiana HOM05D003717 ORTHO05D004848 2.2e-29 133.3 137 56.9
Gohir.D06G053000 Gossypium hirsutum HOM05D003717 ORTHO05D004848 2.8e-29 132.9 137 57.7
Gorai.010G061900 Gossypium raimondii HOM05D003717 ORTHO05D004848 2.8e-29 132.9 137 57.7
CiPaw.03G247500 Carya illinoinensis HOM05D003717 ORTHO05D004848 8.2e-29 131.3 138 55.1
Sopen12g004600 Solanum pennellii HOM05D003717 ORTHO05D004848 1.1e-28 131.0 137 51.8
Ciclev10007683m.g Citrus clementina HOM05D003717 ORTHO05D004848 1.4e-28 130.6 137 55.5
Atru.chr7.1107 Acer truncatum HOM05D003717 ORTHO05D004848 2.4e-28 129.8 137 58.4
Gohir.A06G054000 Gossypium hirsutum HOM05D003717 ORTHO05D004848 4.1e-28 129.0 137 56.2
Oeu055968.1 Olea europaea HOM05D003717 ORTHO05D004848 1.6e-27 127.1 146 51.4
Gohir.A08G238200 Gossypium hirsutum HOM05D003717 ORTHO05D004848 2.0e-27 126.7 137 54.7
Gorai.004G276400 Gossypium raimondii HOM05D003717 ORTHO05D004848 2.7e-27 126.3 137 54.7
Nitab4.5_0001349g0040 Nicotiana tabacum HOM05D003717 ORTHO05D004848 2.7e-27 126.3 137 50.4
Cpa.g.sc46.33 Carica papaya HOM05D003717 ORTHO05D004848 4.5e-27 125.6 137 51.8
CiPaw.04G174300 Carya illinoinensis HOM05D003717 ORTHO05D004848 4.5e-27 125.6 135 52.6
TWI32G0090 Tripterygium wilfordii HOM05D003717 ORTHO05D004848 5.9e-27 125.2 137 54.7
Gohir.D08G258900 Gossypium hirsutum HOM05D003717 ORTHO05D004848 7.7e-27 124.8 138 54.3
MD15G1168800 Malus domestica HOM05D003717 ORTHO05D004848 1.3e-26 124.0 138 53.6
RcHm_v2.0_Chr2g0087771 Rosa chinensis HOM05D003717 ORTHO05D004848 2.2e-26 123.2 141 48.9
Thecc.09G130900 Theobroma cacao HOM05D003717 ORTHO05D004848 2.9e-26 122.9 136 53.7
DCAR_009320 Daucus carota HOM05D003717 ORTHO05D004848 5.0e-26 122.1 140 51.4
Nn2g12095 Nelumbo nucifera HOM05D003717 ORTHO05D004848 6.5e-26 121.7 140 51.4
TWI63G0928 Tripterygium wilfordii HOM05D003717 ORTHO05D004848 8.5e-26 121.3 137 55.5
CANSAT11G0921 Cannabis sativa HOM05D003717 ORTHO05D004848 1.1e-25 120.9 137 49.6
Eucgr.C01375 Eucalyptus grandis HOM05D003717 ORTHO05D004848 1.9e-25 120.2 137 54.7
Lalb_Chr07g0179131 Lupinus albus HOM05D003717 ORTHO05D004848 4.2e-25 119.0 140 53.6
Nitab4.5_0006319g0050 Nicotiana tabacum HOM05D003717 ORTHO05D004848 7.2e-25 118.2 129 51.2
Lj4g0002653 Lotus japonicus HOM05D003717 ORTHO05D004848 9.4e-25 117.9 138 52.2
PGR142G2827 Punica granatum HOM05D003717 ORTHO05D004848 1.2e-24 117.5 143 53.8
Gorai.009G016100 Gossypium raimondii HOM05D003717 ORTHO05D004848 6.1e-24 115.2 142 51.4
FAN26G2736 Fragaria x ananassa HOM05D003717 ORTHO05D004848 8.0e-24 114.8 141 48.9
Gohir.D05G016000 Gossypium hirsutum HOM05D003717 ORTHO05D004848 8.0e-24 114.8 138 52.2
FAN28G2297 Fragaria x ananassa HOM05D003717 ORTHO05D004848 1.0e-23 114.4 141 48.2
Aqoxy7G03655 Aquilegia oxysepala HOM05D003717 ORTHO05D004848 1.8e-23 113.6 140 48.6
Gohir.A05G014800 Gossypium hirsutum HOM05D003717 ORTHO05D004848 5.2e-23 112.1 138 49.3
MBI15_g08165_MAGBIO Magnolia biondii HOM05D003717 ORTHO05D004848 6.8e-23 111.7 132 50.8
Sc14g0000170 Simmondsia chinensis HOM05D003717 ORTHO05D004848 6.8e-23 111.7 138 50.0
Dinv41482 Davidia involucrata HOM05D003717 ORTHO05D004848 8.8e-23 111.3 137 48.9
Migut.J01218 Erythranthe guttata HOM05D003717 ORTHO05D004848 8.8e-23 111.3 137 50.4
HanXRQChr03g0063211 Helianthus annuus HOM05D003717 ORTHO05D004848 8.8e-23 111.3 138 51.4
PSO210G7704 Papaver somniferum HOM05D003717 ORTHO05D004848 8.8e-23 111.3 138 50.0
AUR62011169 Chenopodium quinoa HOM05D003717 ORTHO05D004848 1.2e-22 110.9 137 48.2
AUR62013315 Chenopodium quinoa HOM05D003717 ORTHO05D004848 1.2e-22 110.9 137 48.2
PGSC0003DMG400001516 Solanum tuberosum HOM05D003717 ORTHO05D004848 1.2e-22 110.9 137 46.7
TPR.G26469 Trifolium pratense HOM05D003717 ORTHO05D004848 1.2e-22 110.9 128 54.7
FAN23G0973 Fragaria x ananassa HOM05D003717 ORTHO05D004848 1.5e-22 110.5 141 46.1
Potri.018G127500 Populus trichocarpa HOM05D003717 ORTHO05D004848 1.5e-22 110.5 138 49.3
ClCG11G003270 Citrullus lanatus HOM05D003717 ORTHO05D004848 2.0e-22 110.2 137 48.2
Manes.14G115300 Manihot esculenta HOM05D003717 ORTHO05D004848 4.4e-22 109.0 137 50.4
Ca_06936_v3 Cicer arietinum L. HOM05D003717 ORTHO05D004848 5.7e-22 108.6 126 54.8
Ca_30465_v3 Cicer arietinum L. HOM05D003717 ORTHO05D004848 5.7e-22 108.6 126 54.8
FvH4_1g02680 Fragaria vesca HOM05D003717 ORTHO05D004848 5.7e-22 108.6 141 46.8
FAN19G0930 Fragaria x ananassa HOM05D003717 ORTHO05D004848 5.7e-22 108.6 141 46.8
Nitab4.5_0012287g0010 Nicotiana tabacum HOM05D003717 ORTHO05D004848 5.7e-22 108.6 144 46.5
PSO210G0578 Papaver somniferum HOM05D003717 ORTHO05D004848 7.5e-22 108.2 138 49.3
Sabra06G0049200 Salix brachista HOM05D003717 ORTHO05D004848 7.5e-22 108.2 138 50.7
Nitab4.5_0000028g0040 Nicotiana tabacum HOM05D003717 ORTHO05D004848 1.3e-21 107.5 138 49.3
MSTRG.6072 Avicennia marina HOM05D003717 ORTHO05D004848 4.8e-21 105.5 150 46.0
CARHR265580 Cardamine hirsuta HOM05D003717 ORTHO05D004848 8.3e-21 104.8 155 44.5
Psat4g040040 Pisum sativum HOM05D003717 ORTHO05D004848 8.3e-21 104.8 137 49.6
CsaV3_2G003070 Cucumis sativus L. HOM05D003717 ORTHO05D004848 1.1e-20 104.4 137 43.8
HanXRQChr09g0243961 Helianthus annuus HOM05D003717 ORTHO05D004848 1.1e-20 104.4 138 48.6
Lalb_Chr12g0198081 Lupinus albus HOM05D003717 ORTHO05D004848 1.1e-20 104.4 137 49.6
Sopen07g003880 Solanum pennellii HOM05D003717 ORTHO05D004848 1.8e-20 103.6 137 44.5
ECA240G3427 Erigeron canadensis HOM05D003717 ORTHO05D004848 3.1e-20 102.8 140 49.3
SalBow6G6762 Salvia bowleyana HOM05D003717 ORTHO05D004848 5.4e-20 102.1 140 48.6
Ah.14g079450 Amaranthus hybridus HOM05D003717 ORTHO05D004848 7.0e-20 101.7 138 42.8
Glyma.13G159100 Glycine max HOM05D003717 ORTHO05D004848 7.0e-20 101.7 137 49.6
Glyma.17G112200 Glycine max HOM05D003717 ORTHO05D004848 7.0e-20 101.7 137 50.4
Phvul.003G167800 Phaseolus vulgaris HOM05D003717 ORTHO05D004848 7.0e-20 101.7 124 54.8
Medtr4g115090 Medicago truncatula HOM05D003717 ORTHO05D004848 9.1e-20 101.3 109 55.0
CAN.G778.1 Capsicum annuum HOM05D003717 ORTHO05D004848 1.2e-19 100.9 137 46.0
AL8G27060 Arabidopsis lyrata HOM05D003717 ORTHO05D004848 1.6e-19 100.5 155 43.9
BcaB08g35617 Brassica carinata HOM05D003717 ORTHO05D004848 1.6e-19 100.5 134 48.5
Thhalv10012867m.g Eutrema salsugineum HOM05D003717 ORTHO05D004848 1.6e-19 100.5 156 43.6
vmacro17235 Vaccinium macrocarpon HOM05D010755 ORTHO05D033870 3.5e-19 99.4 139 48.9
Sed0027813 Sechium edule HOM05D003717 ORTHO05D004848 4.5e-19 99.0 137 43.8
SGA_v2.0_scaffold229G43305 Striga asiatica HOM05D003717 ORTHO05D004848 5.9e-19 98.6 151 43.7
Sp6g14780 Schrenkiella parvula HOM05D003717 ORTHO05D004848 1.0e-18 97.8 156 42.9
AT5G52580 Arabidopsis thaliana HOM05D003717 ORTHO05D004848 1.3e-18 97.4 129 49.6
arahy.Tifrunner.gnm1.ann1.QEV4QV Arachis hypogaea HOM05D003717 ORTHO05D004848 1.3e-18 97.4 136 50.0
arahy.Tifrunner.gnm1.ann1.ZHFU2E Arachis hypogaea HOM05D003717 ORTHO05D004848 1.3e-18 97.4 136 50.0
Potri.006G066300 Populus trichocarpa HOM05D003717 ORTHO05D004848 1.3e-18 97.4 138 47.8
Hund26546 Selenicereus undatus HOM05D003717 ORTHO05D004848 1.3e-18 97.4 145 44.8
Carub.0008s1272 Capsella rubella HOM05D003717 ORTHO05D004848 2.3e-18 96.7 156 42.9
MELO3C004462.2 Cucumis melo HOM05D003717 ORTHO05D004848 5.0e-18 95.5 137 41.6
VMungo1215G1390 Vigna mungo HOM05D003717 ORTHO05D004848 6.5e-18 95.1 137 48.9
ATR0724G026 Amborella trichopoda HOM05D003717 ORTHO05D004848 8.6e-18 94.7 139 46.8
Aa31sc200G80 Aethionema arabicum HOM05D003717 ORTHO05D004848 1.1e-17 94.4 156 43.6
A02p11700 Brassica napus HOM05D003717 ORTHO05D004848 1.5e-17 94.0 154 42.9
Lsat_1_v5_gn_7_44181 Lactuca sativa HOM05D003717 ORTHO05D004848 1.5e-17 94.0 156 44.9
Sed0019028 Sechium edule HOM05D003717 ORTHO05D004848 2.5e-17 93.2 144 43.1
CDE06G0531 Ceratophyllum demersum HOM05D003717 ORTHO05D004848 3.2e-17 92.8 137 40.9
Peaxi162Scf00088g01619 Petunia axillaris HOM05D003717 ORTHO05D004848 5.5e-17 92.0 137 43.1
FAN06G0971 Fragaria x ananassa HOM05D003717 ORTHO05D004848 7.2e-17 91.7 125 47.2
BcaC03g14516 Brassica carinata HOM05D003717 ORTHO05D004848 1.6e-16 90.5 157 41.4
BNapus_Darmor_BZH_scaffold_232p00030 Brassica napus HOM05D003717 ORTHO05D004848 1.6e-16 90.5 157 41.4
BolC2t08086H Brassica oleracea HOM05D003717 ORTHO05D004848 2.8e-16 89.7 157 40.8
BraA02t06235Z Brassica rapa HOM05D003717 ORTHO05D004848 4.7e-16 89.0 157 41.4
THA.LOC104826549 Tarenaya hassleriana HOM05D003717 ORTHO05D004848 4.7e-16 89.0 155 40.0
Aqoxy7G02295 Aquilegia oxysepala HOM05D003717 ORTHO05D004848 1.0e-15 87.8 137 40.1
Sabra18G0108200 Salix brachista HOM05D003717 ORTHO05D004848 1.8e-15 87.0 171 41.5
Hund09277 Selenicereus undatus HOM05D003717 ORTHO05D004848 3.0e-15 86.3 141 43.3
Actinidia26376 Actinidia chinensis HOM05D003717 ORTHO05D004848 2.0e-14 83.6 138 39.9
FAN10G3828 Fragaria x ananassa HOM05D003717 ORTHO05D004848 1.7e-13 80.5 128 43.8
FAN03G2184 Fragaria x ananassa HOM05D003717 ORTHO05D004848 2.8e-13 79.7 128 43.8
SHI28847 Sapria himalayana HOM05D003717 ORTHO05D004848 3.7e-13 79.3 142 41.5
Lsat_1_v5_gn_8_62521 Lactuca sativa HOM05D003717 ORTHO05D004848 4.1e-12 75.9 138 40.6
FvH4_7g25820 Fragaria vesca HOM05D003717 ORTHO05D004848 9.2e-12 74.7 91 49.5
Zm00001eb188660 Zea mays HOM05D003717 ORTHO05D004848 5.9e-11 72.0 104 37.5
unitig_60.g25513 Utricularia gibba HOM05D003717 ORTHO05D004848 1.3e-10 70.9 110 42.7
HPP92_010898 Vanilla planifolia HOM05D003717 ORTHO05D004848 8.6e-10 68.2 118 39.0
vmacro06151 Vaccinium macrocarpon HOM05D003717 ORTHO05D004848 1.1e-09 67.8 61 62.3
Os02g0709800 Oryza sativa ssp. japonica HOM05D003717 ORTHO05D004848 3.3e-09 66.2 95 38.9
SEGI_13709 Sequoiadendron giganteum HOM05D003717 ORTHO05D004848 1.4e-07 60.8 97 44.3


User provided reference genes

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