Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.3e-243 845.1 418 100.0
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.6e-175 619.8 409 77.3
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 4.3e-165 585.1 385 75.3
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 9.5e-165 583.9 354 80.2
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 7.5e-162 574.3 386 73.3
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 2.7e-159 565.8 355 76.6
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 3.5e-159 565.5 363 74.9
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 4.6e-159 565.1 363 73.8
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 1.0e-158 563.9 384 72.9
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 1.5e-157 560.1 396 70.7
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 1.9e-157 559.7 409 68.7
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 4.3e-157 558.5 407 69.8
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 6.2e-156 554.7 350 77.1
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 1.0e-155 553.9 360 74.7
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 1.4e-155 553.5 429 68.3
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 3.1e-155 552.4 349 75.4
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 6.8e-155 551.2 350 76.3
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 8.9e-155 550.8 350 76.6
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.5e-154 550.1 350 76.3
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 7.5e-154 547.7 349 75.6
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 3.7e-153 545.4 352 75.9
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 3.7e-153 545.4 402 67.9
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 8.3e-153 544.3 408 67.4
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 8.3e-153 544.3 382 70.2
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.1e-152 543.9 408 67.4
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 1.6e-151 540.0 347 74.9
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 2.7e-151 539.3 349 73.9
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 3.5e-151 538.9 365 73.4
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 6.0e-151 538.1 414 67.4
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 7.8e-151 537.7 349 73.6
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 1.3e-150 537.0 351 74.9
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 1.7e-150 536.6 346 74.9
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 1.7e-150 536.6 405 67.7
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 2.3e-150 536.2 402 67.7
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 3.9e-150 535.4 412 67.2
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 3.9e-150 535.4 399 68.2
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 5.0e-150 535.0 349 74.8
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 5.0e-150 535.0 352 73.6
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 5.0e-150 535.0 431 63.6
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 5.0e-150 535.0 363 71.3
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 8.6e-150 534.3 361 71.2
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 2.5e-149 532.7 361 73.4
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 2.5e-149 532.7 355 73.0
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.5e-149 532.7 355 73.0
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 3.6e-148 528.9 361 72.3
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.8e-147 526.6 355 72.4
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 3.1e-147 525.8 354 72.6
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 4.0e-147 525.4 387 67.2
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 6.8e-147 524.6 354 74.0
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 8.9e-147 524.2 383 71.5
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 7.5e-146 521.2 352 73.0
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 9.8e-146 520.8 303 82.5
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 9.8e-146 520.8 332 74.1
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 1.3e-145 520.4 446 61.4
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 2.9e-145 519.2 388 68.3
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 1.1e-144 517.3 356 70.8
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 1.4e-144 516.9 375 67.7
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 3.2e-144 515.8 351 72.6
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 1.6e-143 513.5 422 63.7
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 2.1e-143 513.1 351 71.8
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 4.6e-143 511.9 424 62.3
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 1.7e-142 510.0 365 67.7
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 2.3e-142 509.6 351 70.7
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 6.6e-142 508.1 356 71.6
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 6.6e-142 508.1 412 62.6
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 1.5e-141 506.9 341 73.0
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 9.5e-141 504.2 351 70.4
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.2e-140 503.8 356 71.6
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.1e-140 503.1 408 63.7
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 8.1e-140 501.1 306 78.4
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 2.3e-139 499.6 421 60.6
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.4e-138 495.4 303 79.2
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 4.4e-138 495.4 434 59.9
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 7.6e-138 494.6 352 67.3
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 9.9e-138 494.2 418 61.0
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 1.3e-137 493.8 368 68.2
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 1.7e-137 493.4 349 69.1
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 2.9e-137 492.7 303 76.6
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.9e-137 491.9 335 73.4
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 1.4e-136 490.3 425 60.9
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 1.4e-136 490.3 349 69.3
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 1.9e-136 490.0 372 65.1
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.4e-136 489.6 334 72.8
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 1.2e-135 487.3 418 60.0
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.1e-135 486.5 414 60.6
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 3.5e-135 485.7 352 67.9
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 3.5e-135 485.7 349 67.0
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 7.8e-135 484.6 352 65.9
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 1.0e-134 484.2 351 66.7
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 1.3e-134 483.8 345 67.8
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 3.9e-134 482.3 278 82.7
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 5.1e-134 481.9 353 66.0
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 1.1e-133 480.7 352 66.2
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 3.3e-133 479.2 316 74.1
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 6.9e-131 471.5 348 65.2
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.2e-130 470.7 355 66.5
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 2.6e-130 469.5 352 63.6
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 4.4e-130 468.8 351 64.4
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 1.7e-129 466.8 351 63.8
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.7e-129 466.8 349 63.9
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 2.9e-129 466.1 348 64.1
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 4.9e-129 465.3 352 63.6
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 7.1e-128 461.5 331 70.1
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.6e-127 460.3 312 72.1
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 1.6e-127 460.3 308 72.4
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 7.8e-127 458.0 392 59.2
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 6.6e-126 454.9 430 57.2
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 6.2e-124 448.4 322 68.0
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 8.1e-124 448.0 322 68.6
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 4.0e-123 445.7 356 62.4
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 9.0e-123 444.5 329 69.0
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 9.9e-122 441.0 350 63.7
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.3e-118 429.9 266 77.4
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 2.5e-117 426.4 343 61.5
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 9.3e-112 407.9 219 88.6
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 2.1e-111 406.8 322 63.0
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 6.9e-107 391.7 240 77.9
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 1.5e-106 390.6 246 76.8
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 7.6e-106 388.3 379 55.7
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 4.2e-104 382.5 317 63.1
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 5.5e-104 382.1 279 72.0
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 7.1e-104 381.7 364 56.0
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 2.7e-103 379.8 278 66.9
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 4.6e-103 379.0 254 70.9
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 6.0e-103 378.6 380 51.8
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 2.5e-101 373.2 251 68.5
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 4.3e-101 372.5 341 56.0
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 1.2e-98 364.4 324 59.0
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 4.2e-96 355.9 292 61.0
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 4.2e-96 355.9 383 49.3
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 2.3e-94 350.1 378 53.2
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 5.1e-94 349.0 301 60.1
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.3e-93 346.3 405 48.4
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 5.3e-91 339.0 244 65.2
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 3.2e-88 329.7 210 73.8
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 5.7e-85 318.9 209 74.6
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.2e-84 317.0 194 78.9
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 2.2e-81 307.0 364 45.9
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 2.9e-81 306.6 243 65.4
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 1.1e-80 304.7 278 57.2
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 7.2e-80 302.0 308 48.4
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.1e-77 294.7 194 75.3
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 5.3e-75 285.8 302 53.6
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 7.7e-74 282.0 192 68.2
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 2.7e-71 273.5 330 50.0
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 5.7e-69 265.8 280 47.1
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.4e-67 260.4 194 66.0
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 4.0e-62 243.0 135 82.2
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 7.2e-56 222.2 159 67.9
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.3e-46 190.7 339 41.3
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 4.9e-44 183.0 116 75.0
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 6.4e-44 182.6 235 47.7
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.1e-43 181.8 126 70.6
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 2.2e-36 157.5 89 78.7
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 2.2e-36 157.5 338 37.9
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 2.4e-35 154.1 433 28.4
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 1.6e-34 151.4 200 38.0
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 2.1e-31 141.0 158 47.5
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 2.8e-31 140.6 302 27.8
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 2.0e-21 107.8 128 50.8
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.1e-19 102.1 219 28.8
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 7.1e-19 99.4 69 63.8
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 1.6e-18 98.2 69 63.8
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.3e-17 95.1 74 62.2
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 2.6e-13 80.9 44 84.1
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 4.6e-10 70.1 60 56.7
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.3e-09 68.6 55 60.0
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.3e-09 67.8 71 53.5
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 3.9e-09 67.0 55 58.2
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.1e-08 65.5 40 72.5
MD15G1096200 Malus domestica HOM05D004081 ORTHO05D025646 2.8e-07 60.8 46 65.2
MBI18_g30531_MAGBIO Magnolia biondii HOM05D001007 ORTHO05D036465 1.8e-06 58.2 36 72.2
Hund03407 Selenicereus undatus HOM05D004081 ORTHO05D025646 5.3e-06 56.6 51 51.0
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 9.0e-06 55.8 39 61.5


User provided reference genes

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