Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025274 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 8.6e-75 283.5 136 100.0
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 4.8e-25 118.2 61 90.2
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 1.1e-16 90.5 61 70.5
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 6.9e-16 87.8 73 54.8
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 2.6e-15 85.9 75 57.3
Lj9C311G18 Lonicera japonica HOM05D002759 ORTHO05D003290 4.5e-15 85.1 69 58.0
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 7.7e-15 84.3 61 63.9
Actinidia00220 Actinidia chinensis HOM05D002759 ORTHO05D003290 3.8e-14 82.0 112 43.8
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 8.5e-14 80.9 61 67.2
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 1.1e-13 80.5 64 59.4
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 2.5e-13 79.3 61 57.4
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 4.2e-13 78.6 61 57.4
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 3.6e-12 75.5 61 55.7
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 4.7e-12 75.1 61 57.4
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 6.1e-12 74.7 61 55.7
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 2.3e-11 72.8 61 55.7
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 2.3e-11 72.8 61 55.7
unitig_26.g9018 Utricularia gibba HOM05D002759 ORTHO05D003290 6.7e-11 71.2 80 47.5
MD15G1418900 Malus domestica HOM05D002759 ORTHO05D003290 1.1e-10 70.5 61 57.4
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 1.1e-10 70.5 61 52.5
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 2.0e-10 69.7 60 56.7
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 2.6e-10 69.3 61 52.5
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 3.3e-10 68.9 61 54.1
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 4.4e-10 68.6 61 50.8
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 5.7e-10 68.2 74 47.3
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 5.7e-10 68.2 61 49.2
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 7.4e-10 67.8 60 51.7
MD08G1225900 Malus domestica HOM05D002759 ORTHO05D003290 7.4e-10 67.8 54 61.1
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 9.7e-10 67.4 74 48.6
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 1.3e-09 67.0 61 47.5
vmacro01778 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 1.3e-09 67.0 50 66.0
Cpa.g.sc148.29 Carica papaya HOM05D002759 ORTHO05D003290 2.2e-09 66.2 61 52.5
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 2.2e-09 66.2 62 45.2
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 2.8e-09 65.9 61 52.5
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 4.8e-09 65.1 60 51.7
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 4.8e-09 65.1 60 51.7
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 8.2e-09 64.3 74 43.2
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 8.2e-09 64.3 74 43.2
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 1.1e-08 63.9 61 45.9
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 1.1e-08 63.9 61 49.2
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 1.1e-08 63.9 60 41.7
CsaV3_6G032170 Cucumis sativus L. HOM05D002759 ORTHO05D003290 1.4e-08 63.5 85 41.2
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.4e-08 63.5 74 43.2
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.4e-08 63.5 74 43.2
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.8e-08 63.2 61 45.9
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 2.4e-08 62.8 61 47.5
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 2.4e-08 62.8 62 50.0
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 4.1e-08 62.0 58 46.6
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 4.1e-08 62.0 58 46.6
CARHR230020 Cardamine hirsuta HOM05D002759 ORTHO05D003290 5.3e-08 61.6 62 48.4
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 9.1e-08 60.8 77 44.2
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 9.1e-08 60.8 77 44.2
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.2e-07 60.5 61 45.9
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 1.2e-07 60.5 58 48.3
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 2.6e-07 59.3 70 44.3
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 1.0e-06 57.4 74 44.6
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 1.0e-06 57.4 74 44.6
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.0e-06 57.4 57 45.6
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 1.3e-06 57.0 62 41.9
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 1.3e-06 57.0 58 44.8
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 1.7e-06 56.6 62 46.8
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 1.7e-06 56.6 61 44.3
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 2.9e-06 55.8 61 45.9
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 3.8e-06 55.5 60 41.7
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 3.8e-06 55.5 58 43.1
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 3.8e-06 55.5 62 41.9
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 5.0e-06 55.1 62 45.2
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 8.5e-06 54.3 58 44.8


User provided reference genes

Program Settings