Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 9.8e-64 246.5 114 100.0
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 8.4e-31 137.1 121 59.5
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.7e-29 132.1 118 61.9
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.7e-29 132.1 118 61.9
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 6.4e-23 110.9 103 56.3
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 4.6e-21 104.8 116 51.7
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 7.8e-21 104.0 116 51.7
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 1.3e-20 103.2 122 49.2
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 6.6e-20 100.9 114 51.8
Rhsim11G0014800 Rhododendron simsii HOM05D006292 ORTHO05D006110 1.5e-19 99.8 121 49.6
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 1.9e-19 99.4 109 54.1
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 2.5e-19 99.0 116 50.0
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 4.3e-19 98.2 109 55.0
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 5.6e-19 97.8 109 52.3
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 3.6e-18 95.1 109 52.3
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 3.6e-18 95.1 112 46.4
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 4.8e-18 94.7 111 49.5
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 5.3e-17 91.3 104 48.1
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 1.5e-16 89.7 95 50.5
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 2.9e-15 85.5 110 44.5
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 2.9e-15 85.5 106 40.6
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 4.9e-15 84.7 105 44.8
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 8.4e-15 84.0 118 46.6
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 3.2e-14 82.0 114 40.4
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 5.4e-14 81.3 115 47.0
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 9.3e-14 80.5 113 43.4
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 1.2e-13 80.1 114 44.7
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 1.2e-13 80.1 121 43.0
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 2.1e-13 79.3 119 41.2
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 3.5e-13 78.6 112 44.6
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 4.6e-13 78.2 116 43.1
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 4.6e-13 78.2 105 46.7
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 7.9e-13 77.4 120 41.7
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 1.0e-12 77.0 122 43.4
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 1.3e-12 76.6 102 41.2
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 1.8e-12 76.3 135 41.5
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 3.0e-12 75.5 119 38.7
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 3.0e-12 75.5 119 38.7
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 5.1e-12 74.7 109 42.2
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 6.7e-12 74.3 125 41.6
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 6.7e-12 74.3 112 42.0
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 8.7e-12 73.9 115 40.9
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 8.7e-12 73.9 101 45.5
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 8.7e-12 73.9 112 42.0
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 1.1e-11 73.6 137 37.2
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 1.1e-11 73.6 117 42.7
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.9e-11 72.8 125 40.8
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 1.9e-11 72.8 106 38.7
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 1.9e-11 72.8 105 40.0
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 1.9e-11 72.8 104 45.2
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 2.5e-11 72.4 129 39.5
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 2.5e-11 72.4 103 45.6
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 2.5e-11 72.4 112 41.1
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 4.3e-11 71.6 114 40.4
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 5.6e-11 71.2 114 39.5
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 5.6e-11 71.2 109 41.3
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 7.4e-11 70.9 138 38.4
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 7.4e-11 70.9 125 40.0
QL12p005176 Quercus lobata HOM05D006292 ORTHO05D006110 9.6e-11 70.5 115 38.3
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 1.3e-10 70.1 111 42.3
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 1.6e-10 69.7 117 40.2
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 1.6e-10 69.7 110 40.9
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 2.1e-10 69.3 107 40.2
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 2.1e-10 69.3 112 41.1
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 2.1e-10 69.3 113 41.6
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 2.8e-10 68.9 137 35.8
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 2.8e-10 68.9 125 37.6
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 2.8e-10 68.9 109 41.3
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 3.6e-10 68.6 115 37.4
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 3.6e-10 68.6 115 36.5
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 4.8e-10 68.2 115 36.5
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 4.8e-10 68.2 110 39.1
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 6.2e-10 67.8 114 39.5
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 6.2e-10 67.8 117 38.5
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 2.4e-09 65.9 113 40.7
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 2.4e-09 65.9 121 37.2
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 2.4e-09 65.9 121 35.5
Sp2g11580 Schrenkiella parvula HOM05D011808 ORTHO05D006110 2.4e-09 65.9 118 37.3
SpUn0036_0030 Schrenkiella parvula HOM05D011808 ORTHO05D006110 2.4e-09 65.9 118 37.3
Sed0013806 Sechium edule HOM05D011808 ORTHO05D006110 3.1e-09 65.5 122 35.2
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 4.0e-09 65.1 113 39.8
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 5.3e-09 64.7 112 40.2
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 6.9e-09 64.3 114 41.2
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 6.9e-09 64.3 130 39.2
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 6.9e-09 64.3 79 44.3
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 6.9e-09 64.3 79 44.3
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 6.9e-09 64.3 79 44.3
Gohir.A03G000800 Gossypium hirsutum HOM05D006292 ORTHO05D006110 6.9e-09 64.3 123 36.6
Oeu017028.1 Olea europaea HOM05D006292 ORTHO05D006110 6.9e-09 64.3 113 41.6
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 9.0e-09 63.9 126 35.7
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 9.0e-09 63.9 121 37.2
Nn6g33587 Nelumbo nucifera HOM05D006292 ORTHO05D006110 9.0e-09 63.9 72 44.4
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 1.2e-08 63.5 110 38.2
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 1.2e-08 63.5 110 37.3
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 1.2e-08 63.5 110 38.2
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 1.2e-08 63.5 110 37.3
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 1.5e-08 63.2 110 37.3
VMungo1215G0846 Vigna mungo HOM05D006292 ORTHO05D006110 1.5e-08 63.2 122 34.4
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 2.6e-08 62.4 111 39.6
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 2.6e-08 62.4 110 38.2
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 3.4e-08 62.0 110 37.3
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 3.4e-08 62.0 110 37.3
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 3.4e-08 62.0 110 37.3
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.4e-08 62.0 119 39.5
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 4.5e-08 61.6 131 39.7
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 4.5e-08 61.6 131 39.7
Gohir.D03G171400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 4.5e-08 61.6 123 38.2
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 4.5e-08 61.6 119 38.7
Gorai.003G182000 Gossypium raimondii HOM05D006292 ORTHO05D006110 4.5e-08 61.6 123 38.2
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 4.5e-08 61.6 119 38.7
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 5.8e-08 61.2 131 38.2
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 5.8e-08 61.2 110 36.4
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 5.8e-08 61.2 131 38.2
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 5.8e-08 61.2 110 36.4
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 5.8e-08 61.2 131 38.2
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 5.8e-08 61.2 110 36.4
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 1.3e-07 60.1 110 36.4
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 1.3e-07 60.1 110 38.2
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 1.7e-07 59.7 107 39.3
Ah.07g200350 Amaranthus hybridus HOM05D006292 ORTHO05D006110 2.9e-07 58.9 125 36.0
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 2.9e-07 58.9 110 35.5
CiPaw.11G093500 Carya illinoinensis HOM05D006292 ORTHO05D006110 2.9e-07 58.9 114 39.5
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 3.8e-07 58.5 128 35.2
Nitab4.5_0007310g0030 Nicotiana tabacum HOM05D034794 ORTHO05D006110 4.9e-07 58.2 85 40.0
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 8.4e-07 57.4 111 36.9
HPP92_025449 Vanilla planifolia HOM05D006292 ORTHO05D006110 1.1e-06 57.0 122 34.4
Lsat_1_v5_gn_3_17800 Lactuca sativa HOM05D048333 ORTHO05D045263 1.4e-06 56.6 103 36.9
TPR.G28248 Trifolium pratense HOM05D006292 ORTHO05D006110 1.9e-06 56.2 109 37.6
Nitab4.5_0000256g0330 Nicotiana tabacum HOM05D034794 ORTHO05D006110 2.4e-06 55.8 81 39.5


User provided reference genes

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