Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 6.3e-102 374.0 177 100.0
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 9.4e-90 333.6 172 87.2
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 1.8e-88 329.3 175 87.4
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 2.4e-85 318.9 175 86.3
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 1.2e-84 316.6 175 83.4
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 7.7e-84 313.9 205 73.2
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 1.0e-83 313.5 176 82.4
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 1.3e-83 313.2 174 82.2
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.7e-83 312.8 161 88.8
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.7e-83 312.8 174 84.5
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 7.2e-82 307.4 172 83.1
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 1.6e-81 306.2 167 82.0
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 2.1e-81 305.8 170 82.4
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 2.1e-81 305.8 175 81.1
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 2.8e-81 305.4 174 82.2
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 2.8e-81 305.4 173 80.9
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 4.7e-81 304.7 172 80.8
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 8.0e-81 303.9 171 81.3
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 1.0e-80 303.5 173 80.3
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 1.8e-80 302.8 174 78.7
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 2.3e-80 302.4 169 81.7
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 2.3e-80 302.4 173 79.8
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 2.3e-80 302.4 173 80.3
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 5.2e-80 301.2 170 81.2
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 6.8e-80 300.8 169 81.7
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 6.8e-80 300.8 169 81.7
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 8.9e-80 300.4 170 81.2
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 8.9e-80 300.4 170 79.4
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 1.5e-79 299.7 174 77.0
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 2.0e-79 299.3 167 81.4
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 4.4e-79 298.1 175 78.9
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 4.4e-79 298.1 172 77.9
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 4.4e-79 298.1 167 80.2
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 5.7e-79 297.7 175 78.3
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 5.7e-79 297.7 170 77.1
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 5.7e-79 297.7 179 77.7
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 7.5e-79 297.4 233 63.5
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 9.8e-79 297.0 166 79.5
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 9.8e-79 297.0 171 79.5
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 1.3e-78 296.6 170 79.4
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 1.3e-78 296.6 177 78.5
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 1.3e-78 296.6 168 79.8
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 1.7e-78 296.2 173 78.6
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 1.7e-78 296.2 172 77.3
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 1.7e-78 296.2 170 79.4
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 1.7e-78 296.2 181 75.1
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.7e-78 296.2 170 77.6
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 2.2e-78 295.8 168 79.8
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 4.9e-78 294.7 170 77.1
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 8.3e-78 293.9 172 77.3
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 8.3e-78 293.9 166 80.1
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 8.3e-78 293.9 168 79.8
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 1.1e-77 293.5 167 79.6
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 1.1e-77 293.5 168 78.6
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.1e-77 293.5 168 78.6
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 1.4e-77 293.1 173 78.6
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 1.4e-77 293.1 168 77.4
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 1.8e-77 292.7 162 83.3
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.4e-77 292.4 168 78.6
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 3.2e-77 292.0 170 78.2
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 3.2e-77 292.0 166 78.9
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 3.2e-77 292.0 166 78.9
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 3.2e-77 292.0 169 78.7
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 4.1e-77 291.6 168 78.6
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 7.0e-77 290.8 168 78.0
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 7.0e-77 290.8 173 78.6
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 9.2e-77 290.4 172 75.6
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 9.2e-77 290.4 170 76.5
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.6e-76 289.7 168 78.0
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 2.7e-76 288.9 166 79.5
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 3.5e-76 288.5 171 74.9
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 3.5e-76 288.5 171 76.6
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 4.5e-76 288.1 170 77.1
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 7.8e-76 287.3 171 73.7
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 7.8e-76 287.3 180 75.0
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.0e-75 287.0 177 74.6
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 1.0e-75 287.0 174 74.7
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 1.3e-75 286.6 181 74.0
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.7e-75 286.2 177 74.6
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 2.9e-75 285.4 174 73.6
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 2.9e-75 285.4 170 74.7
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 2.9e-75 285.4 169 76.3
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 2.9e-75 285.4 166 77.7
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 3.9e-75 285.0 174 73.6
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 6.6e-75 284.3 171 73.7
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 6.6e-75 284.3 162 79.0
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 6.6e-75 284.3 173 77.5
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 1.5e-74 283.1 176 73.3
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 1.5e-74 283.1 166 77.1
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 2.5e-74 282.3 168 73.2
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 2.5e-74 282.3 166 77.1
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 3.3e-74 282.0 171 72.5
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 7.3e-74 280.8 174 73.0
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 9.5e-74 280.4 174 71.8
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 2.1e-73 279.3 171 72.5
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 2.1e-73 279.3 170 74.7
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 3.6e-73 278.5 170 74.7
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 4.7e-73 278.1 172 73.8
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 6.1e-73 277.7 171 71.3
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 8.0e-73 277.3 171 71.3
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 8.0e-73 277.3 171 71.9
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 8.0e-73 277.3 154 82.5
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 1.8e-72 276.2 171 71.9
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 3.1e-72 275.4 171 71.9
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 3.1e-72 275.4 167 76.0
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 6.8e-72 274.2 171 69.6
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 1.2e-71 273.5 169 72.2
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 1.2e-71 273.5 162 77.2
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 1.5e-71 273.1 171 69.6
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 2.6e-71 272.3 162 80.2
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 2.6e-71 272.3 173 71.1
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 4.4e-71 271.6 179 70.4
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 4.4e-71 271.6 179 70.4
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 1.3e-70 270.0 171 70.8
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 4.9e-70 268.1 168 69.6
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 6.4e-70 267.7 168 73.8
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 8.3e-70 267.3 171 71.3
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 1.1e-69 266.9 177 68.9
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 2.4e-69 265.8 168 73.2
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 4.1e-69 265.0 175 68.6
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 2.7e-68 262.3 175 68.0
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.7e-67 259.6 175 74.3
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 6.6e-67 257.7 163 69.3
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 1.9e-66 256.1 168 66.7
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 4.3e-66 255.0 151 77.5
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 7.3e-66 254.2 174 64.4
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 4.4e-63 245.0 181 63.5
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 1.7e-62 243.0 170 64.7
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 2.2e-62 242.7 169 68.6
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 1.1e-61 240.4 166 65.7
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 7.1e-61 237.7 169 63.3
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 1.1e-58 230.3 167 61.7
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 7.3e-58 227.6 169 59.2
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 1.5e-55 219.9 172 57.0
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 3.0e-51 205.7 172 52.3
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 4.3e-50 201.8 113 80.5
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 2.1e-49 199.5 102 90.2
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.8e-48 196.4 115 81.7
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 3.4e-47 192.2 111 73.0
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 9.9e-47 190.7 122 70.5
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 2.4e-45 186.0 106 80.2
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 3.0e-43 179.1 101 77.2
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 8.7e-43 177.6 170 47.6
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 7.3e-42 174.5 101 76.2
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 2.1e-41 172.9 171 52.0
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.1e-40 170.6 110 71.8
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 2.4e-40 169.5 172 55.2
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 6.9e-40 167.9 103 72.8
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 2.2e-38 162.9 108 65.7
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 2.2e-38 162.9 108 65.7
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 2.4e-37 159.5 85 85.9
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 5.3e-32 141.7 173 46.2
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 9.3e-29 131.0 157 38.2
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.8e-27 126.7 79 74.7
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 2.3e-27 126.3 144 52.8
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 9.6e-26 120.9 123 51.2
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 4.2e-21 105.5 63 74.6
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 3.3e-18 95.9 66 71.2
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 2.6e-15 86.3 188 27.7
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 5.0e-14 82.0 62 59.7
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 7.2e-13 78.2 79 46.8
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 9.3e-13 77.8 62 58.1
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 2.1e-12 76.6 61 60.7
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 3.0e-11 72.8 35 88.6
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 2.2e-09 66.6 48 68.8


User provided reference genes

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