Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025230 Camellia sinensis var. sinensis HOM05D006599 ORTHO05D008304 6.3e-148 527.3 250 100.0
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 2.7e-130 468.8 249 86.7
GSVIVG01032932001 Vitis vinifera HOM05D006599 ORTHO05D008304 4.2e-128 461.5 250 86.8
Thecc.04G093300 Theobroma cacao HOM05D006599 ORTHO05D008304 9.4e-128 460.3 250 84.8
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 1.6e-127 459.5 248 84.3
TWI34G0408 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 2.7e-127 458.8 250 84.0
Hma1.2p1_0481F.1_g162060 Hydrangea macrophylla HOM05D006599 ORTHO05D008304 4.7e-127 458.0 251 86.1
COL.COLO4_21402 Corchorus olitorius HOM05D006599 ORTHO05D008304 2.3e-126 455.7 250 83.6
FvH4_6g47020 Fragaria vesca HOM05D006599 ORTHO05D008304 5.2e-126 454.5 250 82.8
FAN14G4927 Fragaria x ananassa HOM05D006599 ORTHO05D008304 5.2e-126 454.5 250 82.8
Nitab4.5_0000565g0260 Nicotiana tabacum HOM05D006599 ORTHO05D008304 6.8e-126 454.1 251 84.1
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 4.4e-125 451.4 250 83.2
FAN09G1977 Fragaria x ananassa HOM05D006599 ORTHO05D008304 4.4e-125 451.4 250 82.4
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 4.4e-125 451.4 250 82.4
Nitab4.5_0010051g0050 Nicotiana tabacum HOM05D006599 ORTHO05D008304 4.4e-125 451.4 251 83.3
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 7.5e-125 450.7 250 82.4
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 7.5e-125 450.7 250 82.4
TWI32G0394 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 6.3e-124 447.6 250 82.4
Cfa007654 Carpinus fangiana HOM05D006599 ORTHO05D008304 1.1e-123 446.8 250 80.8
FAN02G1129 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.4e-123 446.4 250 81.6
Peaxi162Scf00166g00058 Petunia axillaris HOM05D006599 ORTHO05D008304 1.4e-123 446.4 251 81.7
Nn3g17418 Nelumbo nucifera HOM05D006599 ORTHO05D008304 5.4e-123 444.5 250 80.4
RcHm_v2.0_Chr2g0166081 Rosa chinensis HOM05D006599 ORTHO05D008304 5.4e-123 444.5 250 82.0
Prupe.3G256500 Prunus persica HOM05D006599 ORTHO05D008304 9.2e-123 443.7 250 81.2
CAN.G206.218 Capsicum annuum HOM05D006599 ORTHO05D008304 2.7e-122 442.2 251 81.3
Manes.02G054000 Manihot esculenta HOM05D006599 ORTHO05D008304 2.7e-122 442.2 250 81.2
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 3.5e-122 441.8 250 81.2
Atru.chr8.423 Acer truncatum HOM05D006599 ORTHO05D008304 4.5e-122 441.4 250 81.6
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 7.7e-122 440.7 250 81.2
Solyc02g088730.2 Solanum lycopersicum HOM05D006599 ORTHO05D008304 1.7e-121 439.5 251 80.9
Sopen02g033440 Solanum pennellii HOM05D006599 ORTHO05D008304 2.3e-121 439.1 251 80.9
PGSC0003DMG400001449 Solanum tuberosum HOM05D006599 ORTHO05D008304 1.1e-120 436.8 251 79.7
Potri.017G092800 Populus trichocarpa HOM05D006599 ORTHO05D008304 2.5e-120 435.6 250 79.6
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 4.3e-120 434.9 250 80.8
Cc07_g04100 Coffea canephora HOM05D006599 ORTHO05D008304 8.0e-119 430.6 251 80.5
DCAR_025424 Daucus carota HOM05D006599 ORTHO05D008304 1.4e-118 429.9 250 78.8
Lsat_1_v5_gn_3_98261 Lactuca sativa HOM05D006599 ORTHO05D008304 2.3e-118 429.1 249 77.5
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 3.0e-118 428.7 250 81.2
arahy.Tifrunner.gnm1.ann1.CT2P3Y Arachis hypogaea HOM05D006599 ORTHO05D008304 8.9e-118 427.2 252 79.0
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 1.5e-117 426.4 252 78.6
Sabra17G0081900 Salix brachista HOM05D006599 ORTHO05D008304 1.3e-116 423.3 250 78.0
HanXRQChr17g0546571 Helianthus annuus HOM05D006599 ORTHO05D008304 2.9e-116 422.2 250 79.2
CiPaw.03G089500 Carya illinoinensis HOM05D006599 ORTHO05D008304 4.9e-116 421.4 250 79.6
Ca_04338_v3 Cicer arietinum L. HOM05D006599 ORTHO05D008304 9.2e-115 417.2 252 76.2
ClCG07G007400 Citrullus lanatus HOM05D006599 ORTHO05D008304 2.0e-114 416.0 250 76.0
MD09G1064500 Malus domestica HOM05D006599 ORTHO05D008304 4.6e-114 414.8 250 78.4
Sc14g0006220 Simmondsia chinensis HOM05D006599 ORTHO05D008304 4.6e-114 414.8 250 76.0
Migut.H00636 Erythranthe guttata HOM05D006599 ORTHO05D008304 3.0e-113 412.1 250 74.0
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 5.0e-113 411.4 254 75.2
MELO3C013909.2 Cucumis melo HOM05D006599 ORTHO05D008304 1.5e-112 409.8 250 74.0
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 1.5e-112 409.8 250 74.0
MSTRG.23889 Avicennia marina HOM05D006599 ORTHO05D008304 4.3e-112 408.3 250 74.8
Glyma.18G265500 Glycine max HOM05D006599 ORTHO05D008304 7.3e-112 407.5 252 75.0
Psat3g201440 Pisum sativum HOM05D006599 ORTHO05D008304 9.5e-112 407.1 252 72.6
Lalb_Chr17g0337021 Lupinus albus HOM05D006599 ORTHO05D008304 1.6e-111 406.4 252 75.0
Oeu047780.1 Olea europaea HOM05D006599 ORTHO05D008304 2.1e-111 406.0 250 75.6
Gohir.D09G009200 Gossypium hirsutum HOM05D006599 ORTHO05D008304 4.7e-111 404.8 250 74.0
CsaV3_3G002390 Cucumis sativus L. HOM05D006599 ORTHO05D008304 8.0e-111 404.1 250 73.6
Lj1g0001712 Lotus japonicus HOM05D006599 ORTHO05D008304 1.4e-110 403.3 252 73.4
Gohir.A09G010100 Gossypium hirsutum HOM05D006599 ORTHO05D008304 1.8e-110 402.9 250 74.0
Gorai.006G010900 Gossypium raimondii HOM05D006599 ORTHO05D008304 1.8e-110 402.9 250 73.6
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 4.0e-110 401.7 252 73.0
Phvul.008G034600 Phaseolus vulgaris HOM05D006599 ORTHO05D008304 4.0e-110 401.7 252 73.8
VMungo1383G0637 Vigna mungo HOM05D006599 ORTHO05D008304 8.9e-110 400.6 252 73.4
Aqoxy3G00501 Aquilegia oxysepala HOM05D006599 ORTHO05D008304 2.6e-109 399.1 250 72.8
Oeu035439.1 Olea europaea HOM05D006599 ORTHO05D008304 7.5e-109 397.5 250 74.4
Sed0027615 Sechium edule HOM05D006599 ORTHO05D008304 1.3e-108 396.7 250 71.6
Manes.01G097300 Manihot esculenta HOM05D006599 ORTHO05D008304 1.9e-107 392.9 228 79.8
Eucgr.J01379 Eucalyptus grandis HOM05D006599 ORTHO05D008304 7.0e-107 391.0 250 71.6
Thecc.04G093200 Theobroma cacao HOM05D006599 ORTHO05D008304 2.0e-106 389.4 250 74.8
TPR.G33427 Trifolium pratense HOM05D006599 ORTHO05D008304 2.0e-106 389.4 252 71.4
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 7.8e-106 387.5 250 75.2
AUR62029230 Chenopodium quinoa HOM05D006599 ORTHO05D008304 1.5e-104 383.3 244 73.0
ECA232G1145 Erigeron canadensis HOM05D006599 ORTHO05D008304 1.5e-104 383.3 250 71.2
HanXRQChr17g0551751 Helianthus annuus HOM05D006599 ORTHO05D008304 7.3e-104 380.9 250 69.6
AUR62022778 Chenopodium quinoa HOM05D006599 ORTHO05D008304 1.6e-103 379.8 244 73.4
THA.LOC104823890 Tarenaya hassleriana HOM05D006599 ORTHO05D008304 1.6e-103 379.8 251 69.3
Thhalv10027896m.g Eutrema salsugineum HOM05D006599 ORTHO05D008304 1.5e-101 373.2 252 67.5
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 2.0e-101 372.9 250 68.0
A04p11970 Brassica napus HOM05D006599 ORTHO05D008304 9.8e-101 370.5 252 67.1
C04p45620 Brassica napus HOM05D006599 ORTHO05D008304 9.8e-101 370.5 252 67.1
BolC4t26144H Brassica oleracea HOM05D006599 ORTHO05D008304 9.8e-101 370.5 252 67.1
BraA04t16862Z Brassica rapa HOM05D006599 ORTHO05D008304 9.8e-101 370.5 252 67.1
BcaC02g09687 Brassica carinata HOM05D006599 ORTHO05D008304 1.7e-100 369.8 252 67.1
Aa31LG9G16680 Aethionema arabicum HOM05D006599 ORTHO05D008304 8.3e-100 367.5 252 66.7
AT5G39250 Arabidopsis thaliana HOM05D006599 ORTHO05D008304 1.4e-99 366.7 253 68.0
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 1.4e-99 366.7 251 66.5
Glyma.08G243300 Glycine max HOM05D006599 ORTHO05D008304 1.9e-99 366.3 262 66.0
Peaxi162Scf00451g00012 Petunia axillaris HOM05D006599 ORTHO05D008304 9.2e-99 364.0 238 71.4
BcaB06g27283 Brassica carinata HOM05D006599 ORTHO05D008304 1.6e-98 363.2 252 65.5
SGA_v2.0_scaffold52G19170 Striga asiatica HOM05D006599 ORTHO05D008304 1.3e-97 360.1 251 66.5
Sp7g02740 Schrenkiella parvula HOM05D006599 ORTHO05D008304 1.7e-97 359.8 252 65.1
AL7G51210 Arabidopsis lyrata HOM05D006599 ORTHO05D008304 5.1e-97 358.2 252 65.5
Carub.0007s3667 Capsella rubella HOM05D006599 ORTHO05D008304 3.3e-96 355.5 252 64.7
CARHR263160 Cardamine hirsuta HOM05D006599 ORTHO05D008304 4.3e-96 355.1 252 63.9
ATR0064G081 Amborella trichopoda HOM05D006599 ORTHO05D008304 5.6e-96 354.8 249 64.3
Haze_14439 Corylus avellana HOM05D006599 ORTHO05D008304 2.8e-95 352.4 203 77.8
unitig_744.g23984 Utricularia gibba HOM05D006599 ORTHO05D008304 1.7e-92 343.2 250 63.2
CDE10G0620 Ceratophyllum demersum HOM05D006599 ORTHO05D008304 2.9e-92 342.4 240 62.1
SHI25645 Sapria himalayana HOM05D006599 ORTHO05D008304 3.5e-82 308.9 245 60.8
Zm00001eb020180 Zea mays HOM05D006599 ORTHO05D008304 4.8e-79 298.5 248 57.3
Os03g0423000 Oryza sativa ssp. japonica HOM05D006599 ORTHO05D008304 3.1e-78 295.8 247 56.3
HPP92_009527 Vanilla planifolia HOM05D006599 ORTHO05D008304 1.2e-77 293.9 247 57.1
HPP92_009554 Vanilla planifolia HOM05D006599 ORTHO05D008304 3.4e-77 292.4 247 56.7
Pp3c13_10960 Physcomitrium patens HOM05D006599 ORTHO05D008304 3.5e-74 282.3 250 53.6
FAN05G2816 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.5e-72 276.9 154 77.9
Dinv34953 Davidia involucrata HOM05D006599 ORTHO05D008304 9.9e-69 264.2 139 92.8
SMO347G0158 Selaginella moellendorffii HOM05D006599 ORTHO05D008304 3.0e-65 252.7 267 47.6
Mapoly0038s0100 Marchantia polymorpha HOM05D006599 ORTHO05D008304 1.5e-64 250.4 251 47.8
Lsat_1_v5_gn_7_2780 Lactuca sativa HOM05D006599 ORTHO05D008304 1.4e-59 233.8 258 52.3
Peaxi162Scf00451g00005 Petunia axillaris HOM05D006599 ORTHO05D008304 2.1e-58 229.9 286 49.0
Lj4E117T1 Lonicera japonica HOM05D006599 ORTHO05D008304 6.5e-52 208.4 111 84.7
Dinv33823 Davidia involucrata HOM05D006599 ORTHO05D008304 2.2e-47 193.4 99 94.9
Lalb_Chr10g0093051 Lupinus albus HOM05D006599 ORTHO05D008304 1.6e-34 150.6 95 73.7
PGSC0003DMG400031200 Solanum tuberosum HOM05D006599 ORTHO05D008304 2.6e-32 143.3 100 74.0
EL10Ac9g22551 Beta vulgaris HOM05D006599 ORTHO05D008304 3.8e-28 129.4 71 78.9
Peaxi162Scf00270g00422 Petunia axillaris HOM05D006599 ORTHO05D008304 3.0e-25 119.8 153 50.3
Lalb_Chr10g0093041 Lupinus albus HOM05D006599 ORTHO05D008304 1.9e-19 100.5 54 75.9
MD17G1057800 Malus domestica HOM05D006599 ORTHO05D008304 6.8e-17 92.0 52 67.3
TPR.G10380 Trifolium pratense HOM05D006599 ORTHO05D008304 1.1e-11 74.7 45 68.9
Mapoly0033s0071 Marchantia polymorpha HOM05D006599 ORTHO05D008304 2.1e-10 70.5 186 25.3
Sabra16G0305200 Salix brachista HOM05D001305 ORTHO05D007147 5.4e-06 55.8 113 30.1
Potri.001G452000 Populus trichocarpa HOM05D001305 ORTHO05D007147 7.0e-06 55.5 122 28.7
FAN07G2804 Fragaria x ananassa HOM05D007529 ORTHO05D007451 9.2e-06 55.1 117 28.2


User provided reference genes

Program Settings