Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 4.6e-97 357.8 176 100.0
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 3.8e-91 338.2 176 92.0
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 3.0e-88 328.6 176 89.8
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 1.1e-85 320.1 176 88.6
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 1.4e-85 319.7 176 87.5
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 1.4e-85 319.7 176 87.5
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 1.4e-85 319.7 176 87.5
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 1.8e-85 319.3 176 87.5
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.6e-84 316.2 176 86.9
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 2.0e-84 315.8 176 86.4
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 1.0e-83 313.5 176 85.2
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 1.0e-83 313.5 176 86.4
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 2.2e-83 312.4 176 85.8
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 3.8e-83 311.6 176 83.5
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 5.0e-83 311.2 176 85.2
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 1.1e-82 310.1 176 85.2
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.9e-82 309.3 176 82.4
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 1.2e-81 306.6 167 86.8
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 1.6e-81 306.2 172 85.5
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 3.0e-80 302.0 166 87.3
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 4.0e-80 301.6 176 81.8
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 4.0e-80 301.6 176 80.7
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 4.0e-80 301.6 177 83.1
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 1.2e-79 300.1 177 81.9
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 2.0e-79 299.3 176 81.8
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 2.6e-79 298.9 176 83.0
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 3.3e-79 298.5 176 82.4
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 3.3e-79 298.5 177 82.5
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 4.4e-79 298.1 177 82.5
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 5.7e-79 297.7 176 81.2
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 7.5e-79 297.4 167 85.6
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 7.5e-79 297.4 177 81.9
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 7.5e-79 297.4 176 80.1
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 9.7e-79 297.0 176 82.4
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 1.3e-78 296.6 176 83.5
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 2.2e-78 295.8 175 81.1
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.8e-78 295.4 176 81.8
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.8e-78 295.4 176 81.8
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 2.8e-78 295.4 177 80.8
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 4.8e-78 294.7 176 80.7
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 4.8e-78 294.7 177 81.9
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 4.8e-78 294.7 166 85.5
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 4.8e-78 294.7 176 80.7
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 4.8e-78 294.7 168 83.3
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 6.3e-78 294.3 176 83.0
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 6.3e-78 294.3 176 83.0
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 6.3e-78 294.3 164 85.4
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 8.2e-78 293.9 176 82.4
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.1e-77 293.5 176 80.1
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 1.1e-77 293.5 177 81.9
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 1.8e-77 292.7 177 80.2
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 2.4e-77 292.4 170 80.6
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 3.1e-77 292.0 177 81.4
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 4.1e-77 291.6 177 80.8
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 5.3e-77 291.2 177 80.2
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 7.0e-77 290.8 176 80.1
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 9.1e-77 290.4 176 79.5
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 9.1e-77 290.4 176 78.4
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 1.2e-76 290.0 181 78.5
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 1.6e-76 289.7 178 80.3
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 2.0e-76 289.3 154 89.6
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 2.0e-76 289.3 176 80.1
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 3.5e-76 288.5 176 79.0
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 4.5e-76 288.1 176 79.0
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 5.9e-76 287.7 177 78.5
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 5.9e-76 287.7 176 79.0
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 7.7e-76 287.3 179 79.3
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 1.3e-75 286.6 179 79.3
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.7e-75 286.2 176 80.1
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 2.2e-75 285.8 176 79.0
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 3.8e-75 285.0 167 83.2
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 3.8e-75 285.0 176 76.1
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 6.5e-75 284.3 167 84.4
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 1.5e-74 283.1 183 78.1
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 1.5e-74 283.1 176 77.3
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.9e-74 282.7 178 79.2
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.5e-74 282.3 171 81.3
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 1.6e-73 279.6 176 77.8
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.1e-73 279.3 175 76.0
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.7e-73 278.9 175 76.0
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 3.6e-73 278.5 175 76.0
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 4.7e-73 278.1 170 78.8
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.7e-73 278.1 175 75.4
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 1.0e-72 276.9 176 76.7
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.4e-72 276.6 175 78.3
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 1.8e-72 276.2 166 78.3
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 1.8e-72 276.2 169 78.1
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 1.8e-72 276.2 169 78.1
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 1.8e-72 276.2 169 78.1
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 1.8e-72 276.2 176 77.8
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 1.8e-72 276.2 168 81.0
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 3.0e-72 275.4 169 78.1
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 3.0e-72 275.4 174 75.9
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 4.0e-72 275.0 169 77.5
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 5.2e-72 274.6 228 63.6
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 8.8e-72 273.9 168 78.0
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 1.2e-71 273.5 177 76.3
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 1.5e-71 273.1 167 78.4
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.0e-71 272.7 169 75.7
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 2.6e-71 272.3 174 74.1
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 2.6e-71 272.3 176 76.1
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 3.4e-71 271.9 161 82.6
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 4.4e-71 271.6 164 79.9
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 5.7e-71 271.2 175 75.4
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 7.5e-71 270.8 164 79.9
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 9.8e-71 270.4 176 71.6
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 4.8e-70 268.1 178 73.0
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 6.3e-70 267.7 168 76.8
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 8.3e-70 267.3 166 77.7
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.1e-69 266.9 171 74.3
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.1e-69 266.9 176 71.6
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 1.1e-69 266.9 172 72.7
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 2.4e-69 265.8 175 74.3
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 4.1e-69 265.0 178 71.9
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 9.1e-69 263.8 175 72.6
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.2e-68 263.5 167 75.4
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 1.2e-68 263.5 172 71.5
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.7e-68 262.3 167 74.9
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 7.7e-68 260.8 169 76.3
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 1.0e-67 260.4 165 78.2
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 2.3e-67 259.2 177 71.8
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 8.6e-67 257.3 177 71.8
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 1.1e-66 256.9 174 71.3
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 4.2e-66 255.0 176 68.8
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 2.1e-65 252.7 177 66.7
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 8.0e-65 250.8 156 78.2
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 1.0e-64 250.4 170 71.2
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 2.3e-64 249.2 157 75.8
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 8.8e-64 247.3 158 74.7
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 2.6e-63 245.7 166 72.3
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 3.7e-62 241.9 174 66.7
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 8.3e-62 240.7 167 67.7
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.4e-61 239.2 174 64.9
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 2.3e-56 222.6 167 65.9
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 6.8e-56 221.1 123 85.4
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 6.8e-56 221.1 123 85.4
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 3.4e-55 218.8 167 65.3
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 3.7e-54 215.3 138 76.8
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.2e-52 210.3 123 82.1
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 3.9e-51 205.3 124 80.6
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 4.7e-49 198.4 114 81.6
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.7e-46 189.9 123 74.8
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 4.1e-45 185.3 191 48.2
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 4.1e-45 185.3 116 79.3
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 1.5e-42 176.8 86 96.5
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 4.0e-40 168.7 174 52.3
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 9.2e-37 157.5 98 74.5
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.7e-36 156.0 105 70.5
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 6.0e-36 154.8 102 71.6
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 1.3e-30 137.1 95 71.6
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 1.2e-23 114.0 60 85.0
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 2.2e-22 109.8 184 36.4
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 3.8e-22 109.0 109 54.1
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 5.4e-21 105.1 116 46.6
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.6e-20 103.6 117 50.4
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.0e-19 100.9 141 41.1
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 3.0e-19 99.4 54 87.0
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 3.3e-18 95.9 162 36.4
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-17 94.0 97 48.5
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 2.8e-17 92.8 52 86.5
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.2e-15 87.4 48 85.4
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 2.6e-15 86.3 50 84.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 6.7e-11 71.6 63 61.9
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 2.6e-07 59.7 35 77.1


User provided reference genes

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