Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025204 Camellia sinensis var. sinensis HOM05D000778 ORTHO05D000601 1.8e-73 279.3 151 100.0
CSS0021475 Camellia sinensis var. sinensis HOM05D000778 ORTHO05D000601 1.1e-49 200.3 140 80.0
Actinidia22345 Actinidia chinensis HOM05D000778 ORTHO05D000601 1.6e-42 176.4 140 73.6
Actinidia13235 Actinidia chinensis HOM05D000778 ORTHO05D000601 3.7e-42 175.3 135 74.8
Actinidia14604 Actinidia chinensis HOM05D000778 ORTHO05D000601 5.7e-35 151.4 153 66.0
vmacro05178 Vaccinium macrocarpon HOM05D000778 ORTHO05D000601 1.4e-33 146.7 143 62.9
Dinv08651 Davidia involucrata HOM05D000778 ORTHO05D000601 5.3e-33 144.8 170 55.9
Hma1.2p1_0000F.1_g000070 Hydrangea macrophylla HOM05D000778 ORTHO05D000601 5.3e-33 144.8 147 62.6
Actinidia15672 Actinidia chinensis HOM05D000778 ORTHO05D000601 2.6e-32 142.5 154 63.0
Dinv30140 Davidia involucrata HOM05D000778 ORTHO05D000601 4.5e-32 141.7 171 56.1
Rhsim07G0157700 Rhododendron simsii HOM05D000778 ORTHO05D000601 5.5e-30 134.8 143 60.8
Oeu043030.1 Olea europaea HOM05D000778 ORTHO05D000601 6.7e-28 127.9 153 55.6
Lj7A722G43 Lonicera japonica HOM05D000778 ORTHO05D000601 3.3e-27 125.6 146 56.2
vmacro11171 Vaccinium macrocarpon HOM05D000778 ORTHO05D000601 3.3e-27 125.6 131 61.1
Hma1.2p1_0043F.1_g025780 Hydrangea macrophylla HOM05D000778 ORTHO05D000601 2.2e-26 122.9 145 54.5
GSVIVG01035857001 Vitis vinifera HOM05D000778 ORTHO05D000601 2.8e-26 122.5 139 59.0
Rhsim02G0200700 Rhododendron simsii HOM05D000778 ORTHO05D000601 1.8e-25 119.8 120 61.7
Prupe.1G480800 Prunus persica HOM05D000778 ORTHO05D000601 9.1e-25 117.5 160 51.2
TAR636G1713 Trochodendron aralioides HOM05D000778 ORTHO05D000601 1.3e-23 113.6 130 55.4
Manes.03G014900 Manihot esculenta HOM05D000778 ORTHO05D000601 2.2e-23 112.8 145 56.6
Lj8C706T3 Lonicera japonica HOM05D000778 ORTHO05D000601 6.5e-23 111.3 152 50.0
Atru.chr7.2424 Acer truncatum HOM05D000778 ORTHO05D000601 8.5e-23 110.9 148 51.4
MD08G1150300 Malus domestica HOM05D000778 ORTHO05D000601 1.9e-22 109.8 160 51.9
SalBow1G2267 Salvia bowleyana HOM05D000778 ORTHO05D000601 4.2e-22 108.6 154 48.7
RcHm_v2.0_Chr6g0297971 Rosa chinensis HOM05D000778 ORTHO05D000601 5.5e-22 108.2 165 49.1
TAR625G1344 Trochodendron aralioides HOM05D000778 ORTHO05D000601 7.2e-22 107.8 135 53.3
TWI32G1045 Tripterygium wilfordii HOM05D000778 ORTHO05D000601 9.4e-22 107.5 149 50.3
MSTRG.26006 Avicennia marina HOM05D000778 ORTHO05D000601 2.1e-21 106.3 152 49.3
Potri.006G254400 Populus trichocarpa HOM05D000778 ORTHO05D000601 2.7e-21 105.9 143 51.0
MSTRG.11618 Avicennia marina HOM05D000778 ORTHO05D000601 3.9e-20 102.1 153 47.7
Ciclev10008326m.g Citrus clementina HOM05D000778 ORTHO05D000601 5.2e-20 101.7 150 51.3
Duzib150G1013 Durio zibethinus HOM05D000778 ORTHO05D000601 8.8e-20 100.9 170 44.7
Potri.018G027500 Populus trichocarpa HOM05D000778 ORTHO05D000601 8.8e-20 100.9 151 51.0
Sabra06G0198800 Salix brachista HOM05D000778 ORTHO05D000601 8.8e-20 100.9 145 50.3
FvH4_2g29090 Fragaria vesca HOM05D000778 ORTHO05D000601 1.5e-19 100.1 175 43.4
FAN15G3123 Fragaria x ananassa HOM05D000778 ORTHO05D000601 1.5e-19 100.1 175 43.4
FAN24G1223 Fragaria x ananassa HOM05D000778 ORTHO05D000601 1.5e-19 100.1 175 43.4
Oeu051867.1 Olea europaea HOM05D000778 ORTHO05D000601 1.5e-19 100.1 149 49.7
TWI34G1143 Tripterygium wilfordii HOM05D000778 ORTHO05D000601 1.5e-19 100.1 149 47.7
Hund04530 Selenicereus undatus HOM05D000778 ORTHO05D000601 2.6e-19 99.4 146 46.6
Glyma.04G066800 Glycine max HOM05D000778 ORTHO05D000601 5.7e-19 98.2 172 45.9
FAN20G1702 Fragaria x ananassa HOM05D000778 ORTHO05D000601 1.3e-18 97.1 175 41.1
COL.COLO4_18857 Corchorus olitorius HOM05D000778 ORTHO05D000601 1.7e-18 96.7 173 43.4
FAN27G0799 Fragaria x ananassa HOM05D000778 ORTHO05D000601 1.7e-18 96.7 175 41.7
Nitab4.5_0000109g0300 Nicotiana tabacum HOM05D000778 ORTHO05D000601 1.7e-18 96.7 164 47.0
Gohir.D06G100200 Gossypium hirsutum HOM05D000778 ORTHO05D000601 2.2e-18 96.3 165 41.8
Migut.E01800 Erythranthe guttata HOM05D000778 ORTHO05D000601 2.8e-18 95.9 135 49.6
Gorai.010G115100 Gossypium raimondii HOM05D000778 ORTHO05D000601 2.8e-18 95.9 165 41.8
Glyma.06G068300 Glycine max HOM05D000778 ORTHO05D000601 3.7e-18 95.5 162 47.5
Phvul.009G093100 Phaseolus vulgaris HOM05D000778 ORTHO05D000601 4.8e-18 95.1 172 47.1
TAR383G0311 Trochodendron aralioides HOM05D000778 ORTHO05D000601 4.8e-18 95.1 136 50.7
Cc08_g00650 Coffea canephora HOM05D000778 ORTHO05D000601 6.3e-18 94.7 145 46.9
DCAR_006217 Daucus carota HOM05D000778 ORTHO05D000601 6.3e-18 94.7 151 47.7
Gohir.A06G098218 Gossypium hirsutum HOM05D000778 ORTHO05D000601 6.3e-18 94.7 159 42.8
Nn2g12061 Nelumbo nucifera HOM05D000778 ORTHO05D000601 6.3e-18 94.7 140 47.9
Duzib168G0519 Durio zibethinus HOM05D000778 ORTHO05D000601 8.2e-18 94.4 167 41.3
Ca_15736_v3 Cicer arietinum L. HOM05D000778 ORTHO05D000601 1.1e-17 94.0 173 40.5
Manes.16G121800 Manihot esculenta HOM05D000778 ORTHO05D000601 1.1e-17 94.0 136 52.9
Nitab4.5_0008266g0010 Nicotiana tabacum HOM05D000778 ORTHO05D000601 1.1e-17 94.0 127 51.2
TAR626G0265 Trochodendron aralioides HOM05D000778 ORTHO05D000601 1.4e-17 93.6 134 50.0
TAR626G1583 Trochodendron aralioides HOM05D000778 ORTHO05D000601 1.4e-17 93.6 134 50.0
Sabra18G0029800 Salix brachista HOM05D000778 ORTHO05D000601 1.8e-17 93.2 152 50.0
Thecc.09G025000 Theobroma cacao HOM05D000778 ORTHO05D000601 1.8e-17 93.2 170 40.6
MSTRG.1723 Avicennia marina HOM05D000778 ORTHO05D000601 2.4e-17 92.8 113 58.4
CAN.G1230.7 Capsicum annuum HOM05D000778 ORTHO05D000601 2.4e-17 92.8 84 67.9
Gohir.D13G189300 Gossypium hirsutum HOM05D000778 ORTHO05D000601 2.4e-17 92.8 163 45.4
Gorai.013G214800 Gossypium raimondii HOM05D000778 ORTHO05D000601 2.4e-17 92.8 163 45.4
Oeu060155.1 Olea europaea HOM05D000778 ORTHO05D000601 2.4e-17 92.8 129 53.5
VMungo1309G1367 Vigna mungo HOM05D000778 ORTHO05D000601 3.1e-17 92.4 172 46.5
Nitab4.5_0006708g0020 Nicotiana tabacum HOM05D000778 ORTHO05D000601 4.1e-17 92.0 148 45.3
Psat5g028760 Pisum sativum HOM05D000778 ORTHO05D000601 5.3e-17 91.7 170 42.4
Ca_29668_v3 Cicer arietinum L. HOM05D000778 ORTHO05D000601 7.0e-17 91.3 171 39.8
DCAR_003097 Daucus carota HOM05D000778 ORTHO05D009105 7.0e-17 91.3 155 43.9
Migut.A00044 Erythranthe guttata HOM05D000778 ORTHO05D000601 7.0e-17 91.3 142 50.7
TWI63G0874 Tripterygium wilfordii HOM05D000778 ORTHO05D000601 7.0e-17 91.3 149 45.0
Ciclev10008193m.g Citrus clementina HOM05D000778 ORTHO05D000601 9.1e-17 90.9 135 49.6
MBI01_g36595_MAGBIO Magnolia biondii HOM05D000778 ORTHO05D000601 9.1e-17 90.9 135 46.7
MBI04_g29346_MAGBIO Magnolia biondii HOM05D000778 ORTHO05D000601 9.1e-17 90.9 129 49.6
MD15G1125300 Malus domestica HOM05D000778 ORTHO05D000601 1.2e-16 90.5 160 44.4
Aqoxy7G03680 Aquilegia oxysepala HOM05D000778 ORTHO05D000601 1.6e-16 90.1 134 47.8
TPR.G3101 Trifolium pratense HOM05D000778 ORTHO05D000601 2.0e-16 89.7 167 41.3
Solyc08g059800.3 Solanum lycopersicum HOM05D000778 ORTHO05D000601 2.6e-16 89.4 157 42.7
Gohir.A13G181500 Gossypium hirsutum HOM05D000778 ORTHO05D000601 3.5e-16 89.0 156 44.2
Nitab4.5_0000209g0190 Nicotiana tabacum HOM05D000778 ORTHO05D000601 3.5e-16 89.0 148 45.9
Glyma.14G116600 Glycine max HOM05D000778 ORTHO05D000601 4.5e-16 88.6 178 39.9
Lalb_Chr08g0244091 Lupinus albus HOM05D000778 ORTHO05D000601 1.0e-15 87.4 158 46.8
Lalb_Chr23g0268521 Lupinus albus HOM05D000778 ORTHO05D000601 1.0e-15 87.4 163 44.2
Glyma.17G211100 Glycine max HOM05D000778 ORTHO05D000601 1.3e-15 87.0 174 39.7
Peaxi162Scf00643g00317 Petunia axillaris HOM05D000778 ORTHO05D000601 1.3e-15 87.0 140 45.7
Solyc06g066030.4 Solanum lycopersicum HOM05D000778 ORTHO05D000601 1.3e-15 87.0 78 70.5
Sopen06g024510 Solanum pennellii HOM05D000778 ORTHO05D000601 1.3e-15 87.0 78 70.5
Cpa.g.sc750.3 Carica papaya HOM05D000778 ORTHO05D000601 2.2e-15 86.3 131 48.9
Haze_21521 Corylus avellana HOM05D000778 ORTHO05D000601 2.9e-15 85.9 187 41.7
Lalb_Chr11g0063731 Lupinus albus HOM05D000778 ORTHO05D000601 3.8e-15 85.5 163 41.7
CiPaw.07G223100 Carya illinoinensis HOM05D000778 ORTHO05D000601 5.0e-15 85.1 164 44.5
Gohir.D07G032200 Gossypium hirsutum HOM05D000778 ORTHO05D000601 6.5e-15 84.7 170 39.4
ECA233G1996 Erigeron canadensis HOM05D000778 ORTHO05D000601 8.5e-15 84.3 116 51.7
Gohir.D05G057100 Gossypium hirsutum HOM05D000778 ORTHO05D000601 8.5e-15 84.3 146 44.5
SalBow4G1516 Salvia bowleyana HOM05D000778 ORTHO05D000601 8.5e-15 84.3 102 53.9
Ca_13028_v3 Cicer arietinum L. HOM05D000778 ORTHO05D000601 1.1e-14 84.0 173 40.5
Sopen08g015920 Solanum pennellii HOM05D000778 ORTHO05D000601 1.5e-14 83.6 140 42.9
CANSAT25G2802 Cannabis sativa HOM05D000778 ORTHO05D000601 1.9e-14 83.2 163 40.5
Eucgr.C02774 Eucalyptus grandis HOM05D000778 ORTHO05D000601 2.5e-14 82.8 142 43.0
Gohir.A07G028100 Gossypium hirsutum HOM05D000778 ORTHO05D000601 3.2e-14 82.4 155 43.9
PGSC0003DMG400015849 Solanum tuberosum HOM05D000778 ORTHO05D000601 4.2e-14 82.0 133 42.9
Gorai.009G058200 Gossypium raimondii HOM05D000778 ORTHO05D000601 5.5e-14 81.6 146 43.8
Zm00001eb386490 Zea mays HOM05D000778 ORTHO05D000601 5.5e-14 81.6 73 64.4
Sc23g0006730 Simmondsia chinensis HOM05D000778 ORTHO05D000601 7.2e-14 81.3 110 50.9
PGR044G0050 Punica granatum HOM05D000778 ORTHO05D000601 9.4e-14 80.9 148 43.9
Medtr1g012530 Medicago truncatula HOM05D000778 ORTHO05D000601 1.2e-13 80.5 157 43.9
QL02p021758 Quercus lobata HOM05D000778 ORTHO05D000601 1.2e-13 80.5 160 43.1
Zm00001eb276570 Zea mays HOM05D000778 ORTHO05D000601 1.6e-13 80.1 84 58.3
TPR.G15675 Trifolium pratense HOM05D000778 ORTHO05D000601 3.6e-13 79.0 157 42.7
Lj5g0007725 Lotus japonicus HOM05D000778 ORTHO05D000601 4.7e-13 78.6 87 58.6
Cfa013147 Carpinus fangiana HOM05D000778 ORTHO05D000601 6.1e-13 78.2 187 40.1
PGR044G0138 Punica granatum HOM05D000778 ORTHO05D000601 6.1e-13 78.2 139 46.0
Hund25807 Selenicereus undatus HOM05D000778 ORTHO05D000601 6.1e-13 78.2 144 41.7
QL02p088836 Quercus lobata HOM05D000778 ORTHO05D000601 8.0e-13 77.8 117 50.4
GSVIVG01015552001 Vitis vinifera HOM05D000778 ORTHO05D000601 8.0e-13 77.8 124 46.0
AUR62012393 Chenopodium quinoa HOM05D000778 ORTHO05D000601 1.0e-12 77.4 82 59.8
AUR62031511 Chenopodium quinoa HOM05D000778 ORTHO05D000601 1.0e-12 77.4 82 59.8
arahy.Tifrunner.gnm1.ann1.RPVQ4I Arachis hypogaea HOM05D000778 ORTHO05D000601 1.4e-12 77.0 178 42.1
Peaxi162Scf00785g00316 Petunia axillaris HOM05D000778 ORTHO05D000601 1.4e-12 77.0 131 48.9
arahy.Tifrunner.gnm1.ann1.D0K4TI Arachis hypogaea HOM05D000778 ORTHO05D000601 1.8e-12 76.6 176 39.8
THA.LOC104803659 Tarenaya hassleriana HOM05D000778 ORTHO05D000601 2.3e-12 76.3 117 46.2
arahy.Tifrunner.gnm1.ann1.TMN1XJ Arachis hypogaea HOM05D000778 ORTHO05D000601 3.0e-12 75.9 181 38.7
arahy.Tifrunner.gnm1.ann1.6NG7WF Arachis hypogaea HOM05D000778 ORTHO05D000601 4.0e-12 75.5 181 40.3
Lj1g0022055 Lotus japonicus HOM05D000778 ORTHO05D000601 4.0e-12 75.5 162 43.2
MELO3C003697.2 Cucumis melo HOM05D000778 ORTHO05D000601 6.7e-12 74.7 75 60.0
Lalb_Chr22g0361471 Lupinus albus HOM05D000778 ORTHO05D000601 6.7e-12 74.7 177 39.5
arahy.Tifrunner.gnm1.ann1.RX6B2U Arachis hypogaea HOM05D000778 ORTHO05D000601 8.8e-12 74.3 117 47.0
arahy.Tifrunner.gnm1.ann1.XG0Z4E Arachis hypogaea HOM05D000778 ORTHO05D000601 8.8e-12 74.3 92 58.7
EL10Ac2g04228 Beta vulgaris HOM05D000778 ORTHO05D000601 1.2e-11 73.9 81 59.3
CsaV3_3G046420 Cucumis sativus L. HOM05D000778 ORTHO05D000601 1.2e-11 73.9 96 53.1
SGA_v2.0_scaffold64G21928 Striga asiatica HOM05D000778 ORTHO05D000601 1.2e-11 73.9 115 50.4
Eucgr.C01741 Eucalyptus grandis HOM05D000778 ORTHO05D000601 1.5e-11 73.6 137 40.1
Medtr3g107050 Medicago truncatula HOM05D000778 ORTHO05D000601 2.0e-11 73.2 168 41.1
Os06g0606800 Oryza sativa ssp. japonica HOM05D000778 ORTHO05D000601 2.0e-11 73.2 80 56.2
Phvul.001G051200 Phaseolus vulgaris HOM05D000778 ORTHO05D000601 2.0e-11 73.2 95 50.5
PSO017G3442 Papaver somniferum HOM05D000778 ORTHO05D000601 2.6e-11 72.8 124 45.2
Sed0021020 Sechium edule HOM05D000778 ORTHO05D000601 2.6e-11 72.8 135 43.0
Psat6g029160 Pisum sativum HOM05D000778 ORTHO05D000601 7.5e-11 71.2 167 40.1
VMungo0647G1150 Vigna mungo HOM05D000778 ORTHO05D000601 9.7e-11 70.9 95 52.6
PSO170G2621 Papaver somniferum HOM05D000778 ORTHO05D000601 1.3e-10 70.5 88 50.0
HanXRQChr02g0050231 Helianthus annuus HOM05D000778 ORTHO05D000601 2.2e-10 69.7 134 45.5
ClCG05G016890 Citrullus lanatus HOM05D000778 ORTHO05D000601 2.8e-10 69.3 100 51.0
HanXRQChr13g0402941 Helianthus annuus HOM05D000778 ORTHO05D000601 2.8e-10 69.3 120 49.2
Sc09g0008270 Simmondsia chinensis HOM05D000778 ORTHO05D000601 3.7e-10 68.9 126 41.3
Lalb_Chr24g0402171 Lupinus albus HOM05D000778 ORTHO05D000601 4.8e-10 68.6 177 37.3
AT4G32330 Arabidopsis thaliana HOM05D000778 ORTHO05D000601 8.2e-10 67.8 138 44.2
Zm00001eb235840 Zea mays HOM05D000778 ORTHO05D000601 8.2e-10 67.8 73 58.9
Sp4g04690 Schrenkiella parvula HOM05D000778 ORTHO05D000601 1.1e-09 67.4 150 39.3
ATR1120G030 Amborella trichopoda HOM05D000778 ORTHO05D000601 1.8e-09 66.6 139 43.9
Sed0016899 Sechium edule HOM05D000778 ORTHO05D000601 1.2e-08 63.9 186 33.9
A03p61350 Brassica napus HOM05D000778 ORTHO05D000601 3.5e-08 62.4 161 42.9
Os02g0200800 Oryza sativa ssp. japonica HOM05D000778 ORTHO05D000601 3.5e-08 62.4 132 38.6
SGA_v2.0_scaffold20G09130 Striga asiatica HOM05D000778 ORTHO05D000601 3.5e-08 62.4 94 53.2
CARHR240230 Cardamine hirsuta HOM05D000778 ORTHO05D000601 4.5e-08 62.0 134 43.3
Lsat_1_v5_gn_6_21500 Lactuca sativa HOM05D000778 ORTHO05D000601 4.5e-08 62.0 135 43.7
BraA03t15180Z Brassica rapa HOM05D000778 ORTHO05D000601 5.9e-08 61.6 161 42.9
BraA08t33781Z Brassica rapa HOM05D000778 ORTHO05D000601 5.9e-08 61.6 148 42.6
Carub.0007s0825 Capsella rubella HOM05D000778 ORTHO05D000601 5.9e-08 61.6 161 40.4
Aa31LG2G18250 Aethionema arabicum HOM05D000778 ORTHO05D000601 1.3e-07 60.5 162 35.8
THA.LOC104803839 Tarenaya hassleriana HOM05D000778 ORTHO05D000601 1.3e-07 60.5 82 53.7
Zm00001eb205790 Zea mays HOM05D000778 ORTHO05D000601 1.3e-07 60.5 73 53.4
AT2G25480 Arabidopsis thaliana HOM05D000778 ORTHO05D000601 8.5e-07 57.8 150 38.0
BcaNung03589 Brassica carinata HOM05D000778 ORTHO05D000601 1.9e-06 56.6 160 40.0
BolC7t46362H Brassica oleracea HOM05D000778 ORTHO05D000601 1.9e-06 56.6 160 40.0
C07p59200 Brassica napus HOM05D000778 ORTHO05D000601 4.2e-06 55.5 160 40.6


User provided reference genes

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