Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025192 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 0.0e+00 1210.7 631 100.0
Actinidia35229 Actinidia chinensis HOM05D004843 ORTHO05D005833 6.1e-248 860.9 632 70.4
CSS0012812 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 6.5e-242 840.9 440 100.0
vmacro09509 Vaccinium macrocarpon HOM05D004843 ORTHO05D005833 7.7e-219 764.2 682 61.6
Rhsim04G0023600 Rhododendron simsii HOM05D004843 ORTHO05D005833 3.6e-216 755.4 721 58.0
Dinv20222 Davidia involucrata HOM05D004843 ORTHO05D005833 6.8e-207 724.5 636 60.4
Hma1.2p1_0416F.1_g148560 Hydrangea macrophylla HOM05D004843 ORTHO05D005833 3.7e-197 692.2 650 56.0
GSVIVG01014249001 Vitis vinifera HOM05D004843 ORTHO05D005833 1.6e-192 676.8 603 58.0
Lj1C835G2 Lonicera japonica HOM05D004843 ORTHO05D005833 3.1e-183 646.0 604 57.3
TAR627G0485 Trochodendron aralioides HOM05D004843 ORTHO05D005833 2.6e-182 642.9 631 53.7
CiPaw.08G115600 Carya illinoinensis HOM05D004843 ORTHO05D005833 3.9e-178 629.0 630 54.0
Oeu024378.1 Olea europaea HOM05D004843 ORTHO05D005833 1.7e-165 587.0 639 49.1
Nitab4.5_0007508g0020 Nicotiana tabacum HOM05D004843 ORTHO05D005833 6.4e-165 585.1 636 49.5
Cfa019615 Carpinus fangiana HOM05D004843 ORTHO05D005833 1.0e-162 577.8 633 49.9
TWI38G0787 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 1.8e-159 567.0 595 49.9
QL11p026708 Quercus lobata HOM05D004843 ORTHO05D005833 5.8e-158 562.0 674 49.1
Solyc12g014090.2 Solanum lycopersicum HOM05D004843 ORTHO05D005833 5.8e-158 562.0 636 48.1
Sopen12g005870 Solanum pennellii HOM05D004843 ORTHO05D005833 7.1e-156 555.1 636 47.6
Ciclev10019192m.g Citrus clementina HOM05D004843 ORTHO05D005833 1.2e-155 554.3 650 48.5
Nitab4.5_0003077g0040 Nicotiana tabacum HOM05D004843 ORTHO05D005833 1.9e-153 547.0 636 47.5
Glyma.13G272600 Glycine max HOM05D004843 ORTHO05D005833 2.5e-153 546.6 621 49.0
CAN.G765.5 Capsicum annuum HOM05D004843 ORTHO05D005833 3.3e-153 546.2 636 46.7
Duzib268G0207 Durio zibethinus HOM05D004843 ORTHO05D005833 3.3e-153 546.2 594 48.5
Lj3g0014260 Lotus japonicus HOM05D004843 ORTHO05D005833 5.6e-153 545.4 635 46.9
Glyma.12G227600 Glycine max HOM05D004843 ORTHO05D005833 8.1e-152 541.6 595 49.4
Prupe.4G172200 Prunus persica HOM05D004843 ORTHO05D005833 2.0e-150 537.0 636 46.5
MSTRG.12883 Avicennia marina HOM05D004843 ORTHO05D005833 1.7e-149 533.9 630 46.2
Cc05_g11520 Coffea canephora HOM05D004843 ORTHO05D005833 1.2e-147 527.7 644 46.3
MELO3C016086.2 Cucumis melo HOM05D004843 ORTHO05D005833 6.0e-147 525.4 605 46.6
Nn1g06340 Nelumbo nucifera HOM05D004843 ORTHO05D005833 1.3e-146 524.2 631 46.0
Manes.15G090500 Manihot esculenta HOM05D004843 ORTHO05D005833 2.3e-146 523.5 663 46.5
Phvul.005G067200 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 3.9e-146 522.7 622 46.6
Sed0025158 Sechium edule HOM05D004843 ORTHO05D005833 1.3e-144 517.7 624 45.8
Oeu061997.2 Olea europaea HOM05D004843 ORTHO05D005833 8.2e-144 515.0 629 46.1
Eucgr.F03287 Eucalyptus grandis HOM05D004843 ORTHO05D005833 2.4e-143 513.5 636 46.9
VMungo1080G1831 Vigna mungo HOM05D004843 ORTHO05D005833 4.0e-143 512.7 630 46.2
RcHm_v2.0_Chr6g0312691 Rosa chinensis HOM05D004843 ORTHO05D005833 9.0e-143 511.5 614 46.3
CsaV3_4G008440 Cucumis sativus L. HOM05D004843 ORTHO05D005833 2.0e-142 510.4 630 44.6
MD10G1064700 Malus domestica HOM05D004843 ORTHO05D005833 4.5e-142 509.2 595 46.2
FvH4_3g19060 Fragaria vesca HOM05D004843 ORTHO05D005833 2.9e-141 506.5 610 46.4
Lj1g0026777 Lotus japonicus HOM05D004843 ORTHO05D005833 3.8e-141 506.1 591 47.4
Lsat_1_v5_gn_5_128660 Lactuca sativa HOM05D004843 ORTHO05D005833 4.9e-141 505.8 632 44.8
RcHm_v2.0_Chr5g0031851 Rosa chinensis HOM05D004843 ORTHO05D005833 4.9e-141 505.8 654 44.3
MD03G1237200 Malus domestica HOM05D004843 ORTHO05D005833 2.5e-140 503.4 619 45.1
Potri.012G106300 Populus trichocarpa HOM05D004843 ORTHO05D005833 5.5e-140 502.3 618 45.3
FAN25G1696 Fragaria x ananassa HOM05D004843 ORTHO05D005833 1.6e-139 500.7 610 46.1
PGR031G2553 Punica granatum HOM05D004843 ORTHO05D005833 2.1e-139 500.4 595 45.9
SGA_v2.0_scaffold70G23704 Striga asiatica HOM05D004843 ORTHO05D005833 6.1e-139 498.8 630 43.8
DCAR_021007 Daucus carota HOM05D004843 ORTHO05D005833 1.3e-138 497.7 636 45.0
Cpa.g.sc131.81 Carica papaya HOM05D004843 ORTHO05D005833 8.7e-138 495.0 623 49.1
Sabra12G0078800 Salix brachista HOM05D004843 ORTHO05D005833 1.1e-137 494.6 672 43.2
ClCG07G009890 Citrullus lanatus HOM05D004843 ORTHO05D005833 1.3e-136 491.1 630 44.1
Gohir.A04G036900 Gossypium hirsutum HOM05D004843 ORTHO05D005833 1.3e-136 491.1 606 45.5
Oeu061325.2 Olea europaea HOM05D004843 ORTHO05D005833 2.2e-136 490.3 533 49.3
Gohir.D05G347266 Gossypium hirsutum HOM05D004843 ORTHO05D005833 1.1e-135 488.0 606 45.0
Gorai.009G374700 Gossypium raimondii HOM05D004843 ORTHO05D005833 1.2e-134 484.6 606 45.4
EL10Ac4g08285 Beta vulgaris HOM05D004843 ORTHO05D005833 1.0e-130 471.5 635 42.8
FAN11G0804 Fragaria x ananassa HOM05D004843 ORTHO05D005833 1.0e-130 471.5 610 44.6
Aqoxy4G00544 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 1.1e-129 468.0 618 42.4
Lalb_Chr25g0286141 Lupinus albus HOM05D004843 ORTHO05D005833 1.1e-129 468.0 622 44.2
TPR.G29644 Trifolium pratense HOM05D004843 ORTHO05D005833 2.5e-124 450.3 617 43.6
arahy.Tifrunner.gnm1.ann1.60B7R0 Arachis hypogaea HOM05D004843 ORTHO05D005833 4.2e-124 449.5 616 43.7
Psat5g240000 Pisum sativum HOM05D004843 ORTHO05D005833 7.2e-124 448.7 595 43.9
AUR62036128 Chenopodium quinoa HOM05D004843 ORTHO05D005833 9.4e-124 448.4 628 42.8
DCAR_031588 Daucus carota HOM05D004843 ORTHO05D005833 8.8e-122 441.8 558 44.4
Peaxi162Scf00000g02614 Petunia axillaris HOM05D004843 ORTHO05D005833 3.3e-121 439.9 629 40.1
arahy.Tifrunner.gnm1.ann1.G1PXE9 Arachis hypogaea HOM05D004843 ORTHO05D005833 9.7e-121 438.3 581 44.2
Sc03g0010280 Simmondsia chinensis HOM05D004843 ORTHO05D005833 2.2e-120 437.2 594 42.3
HanXRQChr10g0302381 Helianthus annuus HOM05D004843 ORTHO05D005833 2.8e-120 436.8 591 42.5
Medtr2g078390 Medicago truncatula HOM05D004843 ORTHO05D005833 2.2e-117 427.2 627 39.4
Migut.H01969 Erythranthe guttata HOM05D004843 ORTHO05D005833 5.2e-114 416.0 625 40.0
Hund13862 Selenicereus undatus HOM05D004843 ORTHO05D005833 2.0e-113 414.1 707 36.8
SalBow7G4166 Salvia bowleyana HOM05D004843 ORTHO05D005833 3.7e-112 409.8 512 42.6
CiPaw.11G165700 Carya illinoinensis HOM05D004843 ORTHO05D005833 1.4e-111 407.9 643 41.1
AUR62019511 Chenopodium quinoa HOM05D004843 ORTHO05D005833 3.6e-107 393.3 571 40.8
Glyma.13G009900 Glycine max HOM05D004843 ORTHO05D005833 3.4e-105 386.7 523 42.1
AUR62026744 Chenopodium quinoa HOM05D004843 ORTHO05D005833 2.2e-104 384.0 515 42.5
THA.LOC104798752 Tarenaya hassleriana HOM05D004843 ORTHO05D005833 7.0e-95 352.4 631 37.7
PSO832G1805 Papaver somniferum HOM05D004843 ORTHO05D005833 1.1e-92 345.1 597 37.7
PSO210G0781 Papaver somniferum HOM05D004843 ORTHO05D005833 6.1e-91 339.3 594 36.7
Phvul.005G068700 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 1.4e-90 338.2 472 41.3
SalBow7G4326 Salvia bowleyana HOM05D004843 ORTHO05D005833 9.8e-89 332.0 496 38.9
Aa31LG6G6390 Aethionema arabicum HOM05D000944 ORTHO05D003581 3.7e-88 330.1 602 36.5
Thecc.07G102200 Theobroma cacao HOM05D004843 ORTHO05D005833 2.4e-87 327.4 287 56.1
Haze_09370 Corylus avellana HOM05D004843 ORTHO05D005833 1.7e-85 321.2 428 41.4
Carub.0001s4239 Capsella rubella HOM05D004843 ORTHO05D005833 3.1e-82 310.5 637 35.6
AL1G61600 Arabidopsis lyrata HOM05D004843 ORTHO05D005833 2.9e-80 303.9 635 34.6
ATR0165G025 Amborella trichopoda HOM05D004843 ORTHO05D005833 3.7e-80 303.5 568 34.0
ECA234G3172 Erigeron canadensis HOM05D004843 ORTHO05D005833 7.0e-79 299.3 332 48.5
TWI31G0686 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 9.2e-79 298.9 634 34.5
CARHR043430 Cardamine hirsuta HOM05D004843 ORTHO05D005833 1.2e-78 298.5 654 34.3
AT1G53200 Arabidopsis thaliana HOM05D004843 ORTHO05D005833 3.5e-78 297.0 603 35.5
C06p14590 Brassica napus HOM05D004843 ORTHO05D005833 6.0e-78 296.2 645 33.6
BraA05t20741Z Brassica rapa HOM05D004843 ORTHO05D005833 1.1e-76 292.0 660 33.2
BolC6t36637H Brassica oleracea HOM05D004843 ORTHO05D005833 3.3e-76 290.4 663 33.2
BcaC08g44060 Brassica carinata HOM05D004843 ORTHO05D005833 4.3e-76 290.0 663 33.0
A05p18490 Brassica napus HOM05D004843 ORTHO05D005833 4.3e-76 290.0 660 33.0
unitig_26.g10042 Utricularia gibba HOM05D004843 ORTHO05D005833 3.6e-75 287.0 457 38.1
CDE10G0946 Ceratophyllum demersum HOM05D004843 ORTHO05D005833 6.2e-75 286.2 496 35.1
Thhalv10011326m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 8.0e-75 285.8 602 34.7
BcaB02g10938 Brassica carinata HOM05D004843 ORTHO05D005833 5.2e-74 283.1 608 33.4
Sp1g39780 Schrenkiella parvula HOM05D004843 ORTHO05D005833 8.9e-74 282.3 621 34.8
Atru.chr2.138 Acer truncatum HOM05D004843 ORTHO05D005833 4.9e-72 276.6 218 61.9
Thhalv10028227m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 1.9e-71 274.6 595 35.1
Aqoxy7G02743 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 4.6e-70 270.0 257 53.3
Thecc.07G102000 Theobroma cacao HOM05D004843 ORTHO05D005833 2.3e-69 267.7 239 54.8
Os06g0244100 Oryza sativa ssp. japonica HOM05D004843 ORTHO05D005833 3.3e-68 263.8 579 31.4
Zm00001eb280030 Zea mays HOM05D004843 ORTHO05D005833 1.6e-67 261.5 584 30.3
Ca_15018_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 2.8e-67 260.8 416 39.2
MBI02_g30880_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 4.7e-67 260.0 356 42.1
Oeu018948.1 Olea europaea HOM05D004843 ORTHO05D005833 7.1e-63 246.1 303 45.9
SEGI_17777 Sequoiadendron giganteum HOM05D004843 ORTHO05D005833 8.6e-61 239.2 582 29.4
HPP92_010831 Vanilla planifolia HOM05D004843 ORTHO05D005833 7.1e-55 219.5 297 41.1
HPP92_010833 Vanilla planifolia HOM05D004843 ORTHO05D005833 2.1e-54 218.0 424 32.8
DCAR_032123 Daucus carota HOM05D004843 ORTHO05D005833 4.3e-52 210.3 166 59.6
Oeu038157.2 Olea europaea HOM05D004843 ORTHO05D005833 9.0e-50 202.6 239 46.9
Ca_04025_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 2.4e-47 194.5 311 38.6
Thecc.07G102300 Theobroma cacao HOM05D004843 ORTHO05D005833 2.7e-46 191.0 184 50.5
A06p01130 Brassica napus HOM05D004843 ORTHO05D005833 4.6e-46 190.3 284 40.1
Thecc.07G101400 Theobroma cacao HOM05D004843 ORTHO05D005833 9.6e-44 182.6 162 54.9
C06p08970 Brassica napus HOM05D004843 ORTHO05D005833 1.6e-43 181.8 231 42.9
CAN.G349.3 Capsicum annuum HOM05D004843 ORTHO05D005833 2.8e-43 181.0 292 39.7
Oeu027285.1 Olea europaea HOM05D004843 ORTHO05D005833 2.8e-43 181.0 164 54.9
BcaC08g43511 Brassica carinata HOM05D004843 ORTHO05D005833 6.2e-43 179.9 303 37.6
Atru.chr2.140 Acer truncatum HOM05D004843 ORTHO05D005833 1.1e-42 179.1 209 48.8
Thecc.07G101600 Theobroma cacao HOM05D004843 ORTHO05D005833 1.4e-42 178.7 160 54.4
BolC6t35976H Brassica oleracea HOM05D004843 ORTHO05D005833 2.0e-41 174.9 234 44.0
Aa31sc1038G10 Aethionema arabicum HOM05D004843 ORTHO05D005833 1.7e-40 171.8 453 30.0
Mapoly0139s0008 Marchantia polymorpha HOM05D004843 ORTHO05D005833 5.3e-34 150.2 597 24.8
Pp3c12_9280 Physcomitrium patens HOM05D004843 ORTHO05D005833 2.6e-33 147.9 589 23.9
CAN.G349.2 Capsicum annuum HOM05D004843 ORTHO05D005833 1.3e-29 135.6 139 48.9
SHI27679 Sapria himalayana HOM05D000105 ORTHO05D000023 2.4e-26 124.8 162 40.1
BraA06t23340Z Brassica rapa HOM05D004843 ORTHO05D005833 1.3e-24 119.0 170 40.6
SHI27676 Sapria himalayana HOM05D004843 ORTHO05D005833 1.1e-23 115.9 346 27.5
AagrBONN_evm.TU.Sc2ySwM_228.3860 Anthoceros agrestis HOM05D004843 ORTHO05D005833 6.1e-22 110.2 286 28.7
Oeu029262.1 Olea europaea HOM05D004843 ORTHO05D005833 1.3e-19 102.4 107 50.5
Oeu052598.1 Olea europaea HOM05D004843 ORTHO05D005833 1.6e-19 102.1 346 26.6
Aqoxy7G02744 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 3.7e-11 74.3 88 43.2
AagrBONN_evm.TU.Sc2ySwM_228.3857 Anthoceros agrestis HOM05D004843 ORTHO05D005833 3.1e-10 71.2 266 24.4
MBI02_g30879_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 5.3e-10 70.5 164 31.7
BraA09t38198Z Brassica rapa HOM05D004843 ORTHO05D005833 7.7e-09 66.6 115 40.0
A09p55300 Brassica napus HOM05D004843 ORTHO05D005833 1.1e-07 62.8 89 43.8
unitig_26.g10043 Utricularia gibba HOM05D004843 ORTHO05D005833 1.4e-07 62.4 148 32.4
Oeu018912.1 Olea europaea HOM05D004843 ORTHO05D005833 5.5e-07 60.5 43 62.8
HPP92_010834 Vanilla planifolia HOM05D004843 ORTHO05D005833 1.2e-06 59.3 135 34.1
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 7.9e-06 56.6 59 49.2


User provided reference genes

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