Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025187 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.8e-75 285.8 145 100.0
CSS0047183 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.2e-71 270.8 140 97.9
CSS0047605 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.2e-69 266.5 154 89.6
CSS0008863 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.5e-64 249.6 173 78.6
CSS0044079 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 8.1e-63 243.8 156 84.0
CSS0028514 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.4e-62 243.0 185 73.0
CSS0044918 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 4.9e-60 234.6 145 85.5
CSS0021742 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.0e-26 121.3 81 79.0
CSS0014503 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 4.5e-13 78.6 44 86.4
CSS0021979 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 4.5e-13 78.6 44 86.4
Duzib106G1284 Durio zibethinus HOM05D007316 ORTHO05D009393 6.5e-12 74.7 54 66.7
Duzib128G0483 Durio zibethinus HOM05D007316 ORTHO05D009393 8.5e-12 74.3 54 68.5
Gohir.D13G105800 Gossypium hirsutum HOM05D007316 ORTHO05D009393 1.1e-11 73.9 45 73.3
Potri.004G058400 Populus trichocarpa HOM05D007316 ORTHO05D009393 3.2e-11 72.4 44 72.7
TAR362G0014 Trochodendron aralioides HOM05D007316 ORTHO05D009393 3.2e-11 72.4 48 64.6
Thecc.05G261200 Theobroma cacao HOM05D007316 ORTHO05D009393 5.5e-11 71.6 54 66.7
CSS0015421 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 7.2e-11 71.2 43 79.1
Potri.011G067800 Populus trichocarpa HOM05D007316 ORTHO05D009393 1.2e-10 70.5 44 70.5
Cfa016046 Carpinus fangiana HOM05D007316 ORTHO05D009393 2.1e-10 69.7 44 70.5
Glyma.03G226500 Glycine max HOM05D007316 ORTHO05D009393 2.1e-10 69.7 44 70.5
Glyma.19G223500 Glycine max HOM05D007316 ORTHO05D009393 2.1e-10 69.7 44 70.5
Phvul.001G220400 Phaseolus vulgaris HOM05D007316 ORTHO05D009393 2.1e-10 69.7 44 70.5
AL2G32940 Arabidopsis lyrata HOM05D007316 ORTHO05D009393 2.7e-10 69.3 44 70.5
Migut.B00683 Erythranthe guttata HOM05D007316 ORTHO05D009393 2.7e-10 69.3 44 72.7
Migut.B00911 Erythranthe guttata HOM05D007316 ORTHO05D009393 2.7e-10 69.3 44 72.7
Thhalv10019421m.g Eutrema salsugineum HOM05D007316 ORTHO05D009393 2.7e-10 69.3 45 71.1
Hma1.2p1_0157F.1_g069460 Hydrangea macrophylla HOM05D007316 ORTHO05D009393 2.7e-10 69.3 44 70.5
Nn7g37509 Nelumbo nucifera HOM05D007316 ORTHO05D009393 2.7e-10 69.3 42 73.8
QL09p023249 Quercus lobata HOM05D007316 ORTHO05D009393 3.6e-10 68.9 45 66.7
vmacro19806 Vaccinium macrocarpon HOM05D007316 ORTHO05D009393 3.6e-10 68.9 43 74.4
CSS0022236 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 4.6e-10 68.6 43 76.7
FvH4_4g00490 Fragaria vesca HOM05D007316 ORTHO05D009393 4.6e-10 68.6 44 65.9
FAN12G3999 Fragaria x ananassa HOM05D007316 ORTHO05D009393 4.6e-10 68.6 44 65.9
FAN17G1024 Fragaria x ananassa HOM05D007316 ORTHO05D009393 4.6e-10 68.6 44 65.9
FAN22G1131 Fragaria x ananassa HOM05D007316 ORTHO05D009393 4.6e-10 68.6 44 65.9
Manes.17G057300 Manihot esculenta HOM05D007316 ORTHO05D009393 4.6e-10 68.6 44 70.5
RcHm_v2.0_Chr4g0385941 Rosa chinensis HOM05D007316 ORTHO05D009393 4.6e-10 68.6 44 65.9
RcHm_v2.0_Chr4g0387841 Rosa chinensis HOM05D007316 ORTHO05D009393 4.6e-10 68.6 44 65.9
RcHm_v2.0_Chr4g0387941 Rosa chinensis HOM05D007316 ORTHO05D009393 4.6e-10 68.6 44 65.9
SalBow3G1440 Salvia bowleyana HOM05D007316 ORTHO05D009393 4.6e-10 68.6 49 65.3
ClCG09G016900 Citrullus lanatus HOM05D007316 ORTHO05D009393 6.1e-10 68.2 44 70.5
Psat3g015560 Pisum sativum HOM05D007316 ORTHO05D009393 6.1e-10 68.2 44 70.5
Sed0015703 Sechium edule HOM05D007316 ORTHO05D009393 6.1e-10 68.2 44 70.5
AT1G73177 Arabidopsis thaliana HOM05D007316 ORTHO05D009393 7.9e-10 67.8 44 70.5
BcaC08g45665 Brassica carinata HOM05D007316 ORTHO05D009393 7.9e-10 67.8 44 70.5
A07p29930 Brassica napus HOM05D007316 ORTHO05D009393 7.9e-10 67.8 44 70.5
C06p34200 Brassica napus HOM05D007316 ORTHO05D009393 7.9e-10 67.8 44 70.5
BolC6t38541H Brassica oleracea HOM05D007316 ORTHO05D009393 7.9e-10 67.8 44 70.5
BraA07t30632Z Brassica rapa HOM05D007316 ORTHO05D009393 7.9e-10 67.8 44 70.5
CANSAT56G2903 Cannabis sativa HOM05D007316 ORTHO05D009393 7.9e-10 67.8 44 70.5
Carub.0002s1996 Capsella rubella HOM05D007316 ORTHO05D009393 7.9e-10 67.8 44 70.5
Cc02_g36870 Coffea canephora HOM05D007316 ORTHO05D009393 7.9e-10 67.8 50 64.0
THA.LOC104813939 Tarenaya hassleriana HOM05D007316 ORTHO05D009393 7.9e-10 67.8 44 70.5
GSVIVG01029768001 Vitis vinifera HOM05D007316 ORTHO05D009393 7.9e-10 67.8 44 70.5
Lj1g0006735 Lotus japonicus HOM05D007316 ORTHO05D009393 1.0e-09 67.4 44 63.6
TWI23G0494 Tripterygium wilfordii HOM05D007316 ORTHO05D009393 1.0e-09 67.4 42 73.8
Aa31LG4G3460 Aethionema arabicum HOM05D007316 ORTHO05D009393 1.4e-09 67.0 42 73.8
Oeu034759.1 Olea europaea HOM05D007316 ORTHO05D009393 1.4e-09 67.0 44 68.2
Ciclev10023234m.g Citrus clementina HOM05D007316 ORTHO05D009393 1.8e-09 66.6 44 68.2
QL02p030600 Quercus lobata HOM05D007316 ORTHO05D009393 1.8e-09 66.6 44 65.9
QL09p015786 Quercus lobata HOM05D007316 ORTHO05D009393 1.8e-09 66.6 44 65.9
Ca_09261_v3 Cicer arietinum L. HOM05D007316 ORTHO05D009393 2.3e-09 66.2 44 65.9
MELO3C021892.2 Cucumis melo HOM05D007316 ORTHO05D009393 2.3e-09 66.2 44 68.2
CsaV3_2G036390 Cucumis sativus L. HOM05D007316 ORTHO05D009393 2.3e-09 66.2 44 68.2
Medtr7g111090 Medicago truncatula HOM05D007316 ORTHO05D009393 2.3e-09 66.2 44 65.9
Sp5g28140 Schrenkiella parvula HOM05D007316 ORTHO05D009393 2.3e-09 66.2 44 68.2
CARHR066170 Cardamine hirsuta HOM05D007316 ORTHO05D009393 3.9e-09 65.5 44 68.2
CiPaw.05G216300 Carya illinoinensis HOM05D007316 ORTHO05D009393 3.9e-09 65.5 44 72.7
Eucgr.H00565 Eucalyptus grandis HOM05D007316 ORTHO05D009393 5.1e-09 65.1 45 62.2
Aqoxy7G02856 Aquilegia oxysepala HOM05D007316 ORTHO05D009393 6.7e-09 64.7 45 62.2
Atru.chr12.1494 Acer truncatum HOM05D007316 ORTHO05D009393 1.1e-08 63.9 44 65.9
GSVIVG01026029001 Vitis vinifera HOM05D007316 ORTHO05D009393 1.1e-08 63.9 44 63.6
arahy.Tifrunner.gnm1.ann1.AE1MMP Arachis hypogaea HOM05D007316 ORTHO05D009393 1.5e-08 63.5 42 66.7
arahy.Tifrunner.gnm1.ann1.CUXT1U Arachis hypogaea HOM05D007316 ORTHO05D009393 1.5e-08 63.5 42 66.7
Prupe.3G122600 Prunus persica HOM05D007316 ORTHO05D009393 1.5e-08 63.5 44 63.6
Cpa.g.sc233.10 Carica papaya HOM05D007316 ORTHO05D009393 2.5e-08 62.8 41 68.3
MBI18_g28941_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004701 2.5e-08 62.8 75 42.7
MD09G1239400 Malus domestica HOM05D007316 ORTHO05D009393 2.5e-08 62.8 59 54.2
PGR119G2118 Punica granatum HOM05D007316 ORTHO05D009393 2.5e-08 62.8 55 54.5
HanXRQChr07g0193721 Helianthus annuus HOM05D007316 ORTHO05D009393 3.3e-08 62.4 43 60.5
Sopen08g002530 Solanum pennellii HOM05D007316 ORTHO05D009393 3.3e-08 62.4 41 68.3
Lalb_Chr04g0260251 Lupinus albus HOM05D007316 ORTHO05D009393 4.3e-08 62.0 40 65.0
Peaxi162Scf00071g00128 Petunia axillaris HOM05D007316 ORTHO05D009393 4.3e-08 62.0 41 68.3
Actinidia11709 Actinidia chinensis HOM05D007316 ORTHO05D009393 5.7e-08 61.6 35 77.1
COL.COLO4_20544 Corchorus olitorius HOM05D007316 ORTHO05D009393 5.7e-08 61.6 51 58.8
Lsat_1_v5_gn_9_84180 Lactuca sativa HOM05D007316 ORTHO05D009393 5.7e-08 61.6 43 58.1
PGSC0003DMG400026307 Solanum tuberosum HOM05D007316 ORTHO05D009393 2.2e-07 59.7 41 63.4
AUR62021328 Chenopodium quinoa HOM05D007316 ORTHO05D009393 3.7e-07 58.9 46 52.2
Rhsim05G0117300 Rhododendron simsii HOM05D007316 ORTHO05D009393 1.8e-06 56.6 64 50.0
RhsimUnG0015700 Rhododendron simsii HOM05D007316 ORTHO05D009393 1.8e-06 56.6 64 50.0
Ah.09g230190 Amaranthus hybridus HOM05D007316 ORTHO05D009393 6.9e-06 54.7 38 57.9


User provided reference genes

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