Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.2e-169 599.0 324 100.0
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 4.2e-104 382.1 322 64.3
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 4.1e-99 365.5 334 62.6
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 4.5e-98 362.1 321 62.3
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 4.7e-95 352.1 335 61.2
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.7e-92 342.4 363 55.4
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.4e-91 338.6 328 58.5
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.0e-89 334.3 328 57.9
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 2.6e-85 319.7 364 53.8
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 3.4e-77 292.7 351 51.3
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 9.2e-75 284.6 377 47.2
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 1.6e-74 283.9 368 48.1
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 5.1e-73 278.9 327 52.0
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.1e-72 277.7 358 46.4
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.5e-72 277.3 379 45.4
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.5e-72 277.3 378 46.3
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 1.2e-71 274.2 350 49.1
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 1.2e-71 274.2 363 48.5
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 2.8e-71 273.1 351 47.3
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 2.8e-71 273.1 328 51.5
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 3.6e-71 272.7 329 49.5
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 3.6e-71 272.7 344 48.5
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 6.2e-71 271.9 339 47.8
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.8e-70 270.4 363 47.1
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.8e-70 270.4 359 47.9
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.0e-69 266.9 363 46.0
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 3.4e-69 266.2 344 51.2
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 5.8e-69 265.4 349 48.4
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.3e-68 264.2 365 46.0
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 2.2e-68 263.5 358 46.1
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 4.9e-68 262.3 336 48.8
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 6.4e-68 261.9 336 49.1
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 6.4e-68 261.9 363 46.3
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.1e-67 261.2 360 45.8
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 1.9e-67 260.4 336 48.8
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 3.2e-67 259.6 374 45.5
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 4.1e-67 259.2 333 48.0
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 6.0e-66 255.4 339 47.5
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.3e-65 254.2 378 45.0
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.3e-65 254.2 372 46.0
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 3.9e-65 252.7 339 47.2
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 3.9e-65 252.7 336 48.5
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 9.6e-64 248.1 324 45.1
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.8e-63 246.5 378 44.4
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 4.7e-63 245.7 330 45.8
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 1.4e-62 244.2 319 47.6
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.8e-62 243.8 327 48.9
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 8.9e-62 241.5 327 47.7
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.2e-61 241.1 330 46.4
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 6.4e-60 235.3 330 45.2
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 6.4e-60 235.3 406 40.9
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.4e-59 234.2 341 45.7
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 3.2e-59 233.0 358 43.9
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 7.1e-59 231.9 349 42.7
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 9.3e-59 231.5 400 42.0
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 2.1e-58 230.3 277 48.0
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 2.1e-58 230.3 277 48.0
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.7e-57 227.3 348 42.0
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 6.6e-57 225.3 351 44.2
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 9.6e-56 221.5 350 40.3
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 3.6e-55 219.5 326 43.6
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.8e-55 219.2 326 42.0
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 3.1e-54 216.5 325 45.8
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.1e-54 216.5 351 41.9
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 5.3e-54 215.7 387 40.3
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 5.3e-54 215.7 298 47.3
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 6.9e-54 215.3 351 41.9
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 1.2e-53 214.5 328 43.6
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 6.4e-52 208.8 350 42.0
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.1e-51 208.0 401 38.4
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.4e-51 207.6 371 39.6
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 5.4e-51 205.7 329 42.6
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 1.2e-50 204.5 307 42.0
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.5e-50 203.0 332 42.8
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 4.6e-50 202.6 350 41.4
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.3e-49 200.3 333 41.7
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.9e-49 199.5 366 39.3
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.9e-48 197.2 368 40.2
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 7.3e-48 195.3 338 38.8
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.3e-47 194.5 347 40.9
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 1.3e-47 194.5 349 44.1
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.1e-46 191.4 354 37.6
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.6e-45 186.8 331 39.9
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.6e-45 186.8 328 39.6
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 2.6e-45 186.8 327 39.8
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.2e-44 183.7 326 39.6
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.1e-43 181.4 339 37.8
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.4e-43 181.0 328 36.6
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 4.2e-43 179.5 334 39.2
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 9.3e-43 178.3 319 40.8
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 1.2e-42 177.9 208 52.9
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.6e-42 177.6 134 70.9
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 3.5e-42 176.4 320 38.8
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.0e-41 174.9 361 36.6
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.5e-40 170.2 327 37.6
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.3e-40 169.5 330 37.0
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 7.4e-40 168.7 334 40.1
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 7.4e-40 168.7 327 38.2
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 9.6e-40 168.3 332 37.0
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 3.7e-39 166.4 321 38.9
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.3e-38 162.5 383 35.8
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 2.0e-37 160.6 340 38.8
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 2.0e-37 160.6 340 38.8
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 4.5e-37 159.5 329 35.9
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.5e-37 159.5 369 34.4
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 1.3e-36 157.9 282 38.7
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.7e-36 157.5 335 37.0
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 2.2e-36 157.1 116 69.8
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 2.9e-36 156.8 282 38.7
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 3.8e-36 156.4 325 35.4
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 8.4e-36 155.2 450 30.9
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 8.4e-36 155.2 114 68.4
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.1e-35 154.8 327 36.1
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.9e-35 154.1 329 35.0
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 2.5e-35 153.7 199 47.7
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 3.2e-35 153.3 348 36.2
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.1e-34 150.6 368 34.2
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.7e-34 150.2 338 37.6
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 3.5e-34 149.8 344 35.8
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 4.6e-34 149.4 370 34.1
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 1.8e-33 147.5 162 52.5
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 3.0e-33 146.7 144 54.9
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 1.1e-32 144.8 341 35.2
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.5e-32 144.4 156 53.8
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.5e-32 144.4 331 37.2
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.5e-32 144.4 156 53.8
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.5e-32 144.4 331 37.2
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.5e-32 144.4 331 37.2
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.9e-32 144.1 233 41.2
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 4.3e-32 142.9 329 34.3
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 1.6e-31 141.0 146 56.2
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 4.8e-31 139.4 332 32.8
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 1.8e-30 137.5 332 32.2
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.2e-29 134.8 328 35.7
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 2.0e-29 134.0 107 64.5
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 2.6e-29 133.7 326 37.4
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 2.6e-29 133.7 193 46.1
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.5e-29 132.9 73 95.9
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 1.0e-28 131.7 323 35.6
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.3e-28 131.3 329 33.4
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.3e-28 131.3 329 33.4
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.3e-28 131.3 329 33.4
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 2.9e-28 130.2 117 58.1
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 5.0e-28 129.4 104 64.4
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 5.0e-28 129.4 104 64.4
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 2.5e-27 127.1 112 60.7
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 7.1e-27 125.6 143 53.1
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.6e-26 122.9 369 32.5
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 3.0e-25 120.2 158 48.7
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 3.9e-25 119.8 138 50.0
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.1e-24 118.2 345 30.1
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 2.5e-24 117.1 130 51.5
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 5.7e-24 115.9 115 47.0
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 5.7e-24 115.9 140 49.3
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 5.7e-24 115.9 73 80.8
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 3.7e-23 113.2 143 47.6
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 1.8e-22 110.9 112 54.5
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 9.0e-22 108.6 343 30.0
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 9.0e-22 108.6 210 35.2
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 8.5e-20 102.1 150 40.0
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.4e-19 101.3 184 33.7
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 2.7e-18 97.1 149 39.6
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 3.3e-16 90.1 317 25.6
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.4e-14 84.7 323 26.3
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 4.1e-14 83.2 83 47.0
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 5.9e-13 79.3 163 40.5
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.3e-12 78.2 140 32.9
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 4.2e-11 73.2 43 83.7
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 2.0e-08 64.3 99 35.4
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 4.4e-08 63.2 91 37.4
Os01g0884700 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.4e-06 58.2 74 40.5
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.8e-06 57.8 69 40.6
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 5.3e-06 56.2 95 31.6


User provided reference genes

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