Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025178 Camellia sinensis var. sinensis HOM05D001348 ORTHO05D008393 2.0e-39 165.2 79 100.0
CSS0015657 Camellia sinensis var. sinensis HOM05D001348 ORTHO05D008393 1.3e-11 72.8 64 60.9
CSS0031743 Camellia sinensis var. sinensis HOM05D001348 ORTHO05D008393 1.8e-11 72.4 64 60.9
RhsimUnG0248600 Rhododendron simsii HOM05D001348 ORTHO05D008393 5.6e-10 67.4 64 53.1
Actinidia10744 Actinidia chinensis HOM05D001348 ORTHO05D008393 2.1e-09 65.5 64 53.1
Eucgr.F03487 Eucalyptus grandis HOM05D001348 ORTHO05D008393 8.1e-09 63.5 64 48.4
PGR031G0282 Punica granatum HOM05D001348 ORTHO05D008393 8.1e-09 63.5 64 48.4
Cpa.g.sc12.269 Carica papaya HOM05D001348 ORTHO05D008393 3.1e-08 61.6 64 46.9
Hund02021 Selenicereus undatus HOM05D001348 ORTHO05D008393 4.0e-08 61.2 64 46.9
vmacro09698 Vaccinium macrocarpon HOM05D001348 ORTHO05D008393 4.0e-08 61.2 64 48.4
AUR62015829 Chenopodium quinoa HOM05D001348 ORTHO05D008393 6.9e-08 60.5 64 46.9
AUR62020390 Chenopodium quinoa HOM05D001348 ORTHO05D008393 6.9e-08 60.5 64 46.9
GSVIVG01037695001 Vitis vinifera HOM05D001348 ORTHO05D008393 6.9e-08 60.5 64 46.9
Dinv40782 Davidia involucrata HOM05D001348 ORTHO05D008393 9.0e-08 60.1 64 48.4
TWI38G1719 Tripterygium wilfordii HOM05D001348 ORTHO05D008393 1.2e-07 59.7 64 45.3
Ah.04g166040 Amaranthus hybridus HOM05D001348 ORTHO05D008393 2.0e-07 58.9 64 45.3
Haze_09716 Corylus avellana HOM05D001348 ORTHO05D008393 2.0e-07 58.9 64 43.8
ECA240G2960 Erigeron canadensis HOM05D001348 ORTHO05D008393 2.0e-07 58.9 64 46.9
QL08p008747 Quercus lobata HOM05D001348 ORTHO05D008393 2.0e-07 58.9 64 43.8
QL09p024307 Quercus lobata HOM05D001348 ORTHO05D008393 2.0e-07 58.9 64 43.8
Potri.001G359200 Populus trichocarpa HOM05D001348 ORTHO05D008393 3.4e-07 58.2 64 46.9
Sp3g18450 Schrenkiella parvula HOM05D001348 ORTHO05D008393 3.4e-07 58.2 64 43.8
arahy.Tifrunner.gnm1.ann1.IC3HGI Arachis hypogaea HOM05D001348 ORTHO05D008393 4.5e-07 57.8 64 45.3
CiPaw.11G192600 Carya illinoinensis HOM05D001348 ORTHO05D008393 5.8e-07 57.4 64 42.2
Lj1C878T2 Lonicera japonica HOM05D001348 ORTHO05D008393 5.8e-07 57.4 64 43.8
Nitab4.5_0000328g0120 Nicotiana tabacum HOM05D001348 ORTHO05D008393 5.8e-07 57.4 65 46.2
Thecc.07G031600 Theobroma cacao HOM05D001348 ORTHO05D008393 5.8e-07 57.4 64 45.3
TPR.G14440 Trifolium pratense HOM05D001348 ORTHO05D008393 5.8e-07 57.4 64 45.3
ClCG09G010970 Citrullus lanatus HOM05D001348 ORTHO05D008393 7.6e-07 57.0 64 46.9
Ciclev10007401m.g Citrus clementina HOM05D001348 ORTHO05D008393 7.6e-07 57.0 64 43.8
Medtr3g053220 Medicago truncatula HOM05D001348 ORTHO05D008393 7.6e-07 57.0 64 43.8
Sed0016477 Sechium edule HOM05D001348 ORTHO05D008393 7.6e-07 57.0 64 46.9
Thhalv10020019m.g Eutrema salsugineum HOM05D001348 ORTHO05D008393 9.9e-07 56.6 64 43.8
AT3G20440 Arabidopsis thaliana HOM05D001348 ORTHO05D008393 1.3e-06 56.2 64 42.2
Lalb_Chr15g0081511 Lupinus albus HOM05D001348 ORTHO05D008393 1.3e-06 56.2 64 43.8
Aa31LG8G7250 Aethionema arabicum HOM05D001348 ORTHO05D008393 1.7e-06 55.8 64 40.6
MSTRG.14452 Avicennia marina HOM05D001348 ORTHO05D008393 1.7e-06 55.8 64 42.2
Psat5g173680 Pisum sativum HOM05D001348 ORTHO05D008393 1.7e-06 55.8 64 42.2
TAR624G0107 Trochodendron aralioides HOM05D001348 ORTHO05D008393 1.7e-06 55.8 64 45.3
BcaB06g26109 Brassica carinata HOM05D001348 ORTHO05D008393 2.2e-06 55.5 64 40.6
BcaC05g28331 Brassica carinata HOM05D001348 ORTHO05D008393 2.2e-06 55.5 64 40.6
C05p43900 Brassica napus HOM05D001348 ORTHO05D008393 2.2e-06 55.5 64 40.6
BolC5t33106H Brassica oleracea HOM05D001348 ORTHO05D008393 2.2e-06 55.5 64 40.6
Cc05_g14070 Coffea canephora HOM05D001348 ORTHO05D008393 2.2e-06 55.5 64 42.2
CsaV3_7G021990 Cucumis sativus L. HOM05D001348 ORTHO05D008393 2.2e-06 55.5 64 45.3
Lj6g0019683 Lotus japonicus HOM05D001348 ORTHO05D008393 2.2e-06 55.5 64 42.2
Nitab4.5_0008150g0010 Nicotiana tabacum HOM05D001348 ORTHO05D008393 2.2e-06 55.5 64 45.3
Aqoxy1G03056 Aquilegia oxysepala HOM05D001348 ORTHO05D008393 2.9e-06 55.1 64 40.6
AL219U10030 Arabidopsis lyrata HOM05D001348 ORTHO05D008393 3.8e-06 54.7 64 40.6
AL3G34160 Arabidopsis lyrata HOM05D001348 ORTHO05D008393 3.8e-06 54.7 64 40.6
A05p28460 Brassica napus HOM05D001348 ORTHO05D008393 3.8e-06 54.7 64 40.6
BraA05t21725Z Brassica rapa HOM05D001348 ORTHO05D008393 3.8e-06 54.7 64 40.6
Carub.0003s2038 Capsella rubella HOM05D001348 ORTHO05D008393 3.8e-06 54.7 64 40.6
CARHR096150 Cardamine hirsuta HOM05D001348 ORTHO05D008393 3.8e-06 54.7 64 42.2
MD11G1212700 Malus domestica HOM05D001348 ORTHO05D008393 3.8e-06 54.7 64 42.2
Solyc07g064830.3 Solanum lycopersicum HOM05D001348 ORTHO05D008393 3.8e-06 54.7 64 43.8
Sopen07g033020 Solanum pennellii HOM05D001348 ORTHO05D008393 3.8e-06 54.7 64 43.8
HanXRQChr03g0076721 Helianthus annuus HOM05D001348 ORTHO05D008393 6.4e-06 53.9 64 43.8
Lsat_1_v5_gn_9_92360 Lactuca sativa HOM05D001348 ORTHO05D008393 6.4e-06 53.9 64 43.8
SGA_v2.0_scaffold363G49944 Striga asiatica HOM05D001348 ORTHO05D008393 6.4e-06 53.9 64 42.2
DCAR_016718 Daucus carota HOM05D001348 ORTHO05D008393 8.4e-06 53.5 64 42.2
Duzib213G0150 Durio zibethinus HOM05D001348 ORTHO05D008393 8.4e-06 53.5 64 42.2
PSO478G3826 Papaver somniferum HOM05D001348 ORTHO05D008393 8.4e-06 53.5 64 40.6


User provided reference genes

Program Settings