Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025158 Camellia sinensis var. sinensis HOM05D005609 ORTHO05D006871 3.2e-65 251.5 119 100.0
vmacro13537 Vaccinium macrocarpon HOM05D005609 ORTHO05D006871 1.5e-14 83.2 45 82.2
Rhsim07G0039900 Rhododendron simsii HOM05D005609 ORTHO05D006871 3.3e-14 82.0 42 85.7
PGR142G0047 Punica granatum HOM05D005609 ORTHO05D006871 4.8e-13 78.2 42 81.0
MSTRG.20658 Avicennia marina HOM05D005609 ORTHO05D006871 6.3e-13 77.8 42 78.6
Eucgr.E03531 Eucalyptus grandis HOM05D005609 ORTHO05D006871 8.2e-13 77.4 42 81.0
Actinidia05794 Actinidia chinensis HOM05D005609 ORTHO05D006871 1.4e-12 76.6 42 81.0
Lalb_Chr03g0040871 Lupinus albus HOM05D005609 ORTHO05D006871 1.4e-12 76.6 42 76.2
Psat3g155960 Pisum sativum HOM05D005609 ORTHO05D006871 1.4e-12 76.6 42 78.6
TPR.G39143 Trifolium pratense HOM05D005609 ORTHO05D006871 1.4e-12 76.6 42 78.6
Oeu021960.2 Olea europaea HOM05D005609 ORTHO05D006871 1.8e-12 76.3 42 76.2
QL04p025874 Quercus lobata HOM05D005609 ORTHO05D006871 1.8e-12 76.3 42 81.0
GSVIVG01022468001 Vitis vinifera HOM05D005609 ORTHO05D006871 1.8e-12 76.3 42 76.2
Ca_20451_v3 Cicer arietinum L. HOM05D005609 ORTHO05D006871 2.4e-12 75.9 42 76.2
SGA_v2.0_scaffold45G17248 Striga asiatica HOM05D005609 ORTHO05D006871 2.4e-12 75.9 39 82.1
THA.LOC104804469 Tarenaya hassleriana HOM05D005609 ORTHO05D006871 2.4e-12 75.9 42 78.6
Migut.K00777 Erythranthe guttata HOM05D005609 ORTHO05D006871 3.1e-12 75.5 42 78.6
Lsat_1_v5_gn_4_38680 Lactuca sativa HOM05D005609 ORTHO05D006871 3.1e-12 75.5 42 78.6
Nn1g00634 Nelumbo nucifera HOM05D005609 ORTHO05D006871 3.1e-12 75.5 48 68.8
TPR.G20612 Trifolium pratense HOM05D005609 ORTHO05D006871 3.1e-12 75.5 36 88.9
Medtr7g450930 Medicago truncatula HOM05D005609 ORTHO05D006871 4.1e-12 75.1 42 76.2
Dinv43582 Davidia involucrata HOM05D005609 ORTHO05D006871 5.3e-12 74.7 42 78.6
Lj1g0022406 Lotus japonicus HOM05D005609 ORTHO05D006871 5.3e-12 74.7 42 76.2
Dinv44009 Davidia involucrata HOM05D005609 ORTHO05D006871 6.9e-12 74.3 60 56.7
Lj9A548T58 Lonicera japonica HOM05D005609 ORTHO05D006871 6.9e-12 74.3 42 76.2
Sed0001863 Sechium edule HOM05D005609 ORTHO05D006871 6.9e-12 74.3 42 76.2
TWI23G1015 Tripterygium wilfordii HOM05D005609 ORTHO05D006871 6.9e-12 74.3 42 76.2
Atru.chr5.35 Acer truncatum HOM05D005609 ORTHO05D006871 9.1e-12 73.9 42 76.2
Atru.chr5.65 Acer truncatum HOM05D005609 ORTHO05D006871 9.1e-12 73.9 42 76.2
Ciclev10020203m.g Citrus clementina HOM05D005609 ORTHO05D006871 9.1e-12 73.9 42 73.8
Hma1.2p1_0973F.1_g243010 Hydrangea macrophylla HOM05D005609 ORTHO05D006871 9.1e-12 73.9 42 73.8
Phvul.008G139400 Phaseolus vulgaris HOM05D005609 ORTHO05D006871 9.1e-12 73.9 42 76.2
Glyma.08G340000 Glycine max HOM05D005609 ORTHO05D006871 1.2e-11 73.6 42 76.2
SEGI_20073 Sequoiadendron giganteum HOM05D005609 ORTHO05D006871 1.2e-11 73.6 42 73.8
Nitab4.5_0000204g0040 Nicotiana tabacum HOM05D005609 ORTHO05D006871 2.0e-11 72.8 42 76.2
Nitab4.5_0011341g0010 Nicotiana tabacum HOM05D005609 ORTHO05D006871 2.0e-11 72.8 42 76.2
PGSC0003DMG402017205 Solanum tuberosum HOM05D005609 ORTHO05D006871 2.0e-11 72.8 42 76.2
Ah.16g103320 Amaranthus hybridus HOM05D005609 ORTHO05D006871 2.6e-11 72.4 42 76.2
Sc26g0001790 Simmondsia chinensis HOM05D005609 ORTHO05D006871 2.6e-11 72.4 42 76.2
Solyc09g090460.3 Solanum lycopersicum HOM05D005609 ORTHO05D006871 2.6e-11 72.4 42 76.2
Sopen09g033380 Solanum pennellii HOM05D005609 ORTHO05D006871 2.6e-11 72.4 42 76.2
TAR375G0879 Trochodendron aralioides HOM05D005609 ORTHO05D006871 2.6e-11 72.4 42 71.4
CAN.G221.2 Capsicum annuum HOM05D005609 ORTHO05D006871 3.4e-11 72.0 42 76.2
HanXRQChr02g0046691 Helianthus annuus HOM05D005609 ORTHO05D006871 3.4e-11 72.0 42 73.8
Peaxi162Scf00103g01924 Petunia axillaris HOM05D005609 ORTHO05D006871 3.4e-11 72.0 42 76.2
HPP92_008983 Vanilla planifolia HOM05D005609 ORTHO05D006871 3.4e-11 72.0 42 71.4
MELO3C006259.2 Cucumis melo HOM05D005609 ORTHO05D006871 4.5e-11 71.6 36 86.1
Manes.05G059500 Manihot esculenta HOM05D005609 ORTHO05D006871 4.5e-11 71.6 42 73.8
PSO063G0967 Papaver somniferum HOM05D005609 ORTHO05D006871 4.5e-11 71.6 60 58.3
AL2G40620 Arabidopsis lyrata HOM05D005609 ORTHO05D006871 5.9e-11 71.2 42 76.2
AT1G80770 Arabidopsis thaliana HOM05D005609 ORTHO05D006871 5.9e-11 71.2 42 76.2
COL.COLO4_11253 Corchorus olitorius HOM05D005609 ORTHO05D006871 5.9e-11 71.2 42 73.8
VMungo1080G0777 Vigna mungo HOM05D005609 ORTHO05D006871 5.9e-11 71.2 42 73.8
Aqoxy3G02536 Aquilegia oxysepala HOM05D005609 ORTHO05D006871 7.7e-11 70.9 42 73.8
Aqoxy7G01889 Aquilegia oxysepala HOM05D005609 ORTHO05D006871 7.7e-11 70.9 42 73.8
CANSAT25G0413 Cannabis sativa HOM05D005609 ORTHO05D006871 7.7e-11 70.9 42 76.2
CARHR073710 Cardamine hirsuta HOM05D005609 ORTHO05D006871 7.7e-11 70.9 42 76.2
CsaV3_3G010350 Cucumis sativus L. HOM05D005609 ORTHO05D006871 7.7e-11 70.9 42 73.8
ECA234G4049 Erigeron canadensis HOM05D005609 ORTHO05D006871 7.7e-11 70.9 42 73.8
BcaB02g07248 Brassica carinata HOM05D000537 ORTHO05D006871 1.0e-10 70.5 42 73.8
BcaC08g45338 Brassica carinata HOM05D005609 ORTHO05D006871 1.0e-10 70.5 42 73.8
BcaC08g47546 Brassica carinata HOM05D005609 ORTHO05D006871 1.0e-10 70.5 42 73.8
A07p26850 Brassica napus HOM05D000537 ORTHO05D006871 1.0e-10 70.5 42 73.8
A07p44900 Brassica napus HOM05D005609 ORTHO05D006871 1.0e-10 70.5 42 73.8
C06p29500 Brassica napus HOM05D000537 ORTHO05D006871 1.0e-10 70.5 42 73.8
BolC6t38114H Brassica oleracea HOM05D005609 ORTHO05D006871 1.0e-10 70.5 42 73.8
BolC6t40388H Brassica oleracea HOM05D005609 ORTHO05D006871 1.0e-10 70.5 42 73.8
BraA07t30328Z Brassica rapa HOM05D005609 ORTHO05D006871 1.0e-10 70.5 42 73.8
BraA07t31997Z Brassica rapa HOM05D005609 ORTHO05D006871 1.0e-10 70.5 42 73.8
Carub.0002s0078 Capsella rubella HOM05D005609 ORTHO05D006871 1.0e-10 70.5 42 76.2
Cpa.g.sc52.59 Carica papaya HOM05D005609 ORTHO05D006871 1.0e-10 70.5 42 71.4
Sp5g34990 Schrenkiella parvula HOM05D005609 ORTHO05D006871 1.0e-10 70.5 42 73.8
Aa31LG4G1030 Aethionema arabicum HOM05D005609 ORTHO05D006871 1.3e-10 70.1 42 73.8
CiPaw.14G015500 Carya illinoinensis HOM05D005609 ORTHO05D006871 1.3e-10 70.1 42 71.4
Haze_02915 Corylus avellana HOM05D005609 ORTHO05D006871 1.3e-10 70.1 42 71.4
Potri.002G134900 Populus trichocarpa HOM05D005609 ORTHO05D006871 1.3e-10 70.1 42 71.4
Thecc.02G366200 Theobroma cacao HOM05D005609 ORTHO05D006871 1.3e-10 70.1 42 71.4
Cfa022162 Carpinus fangiana HOM05D005609 ORTHO05D006871 1.7e-10 69.7 42 71.4
Gohir.D09G165100 Gossypium hirsutum HOM05D005609 ORTHO05D006871 1.7e-10 69.7 42 71.4
Gorai.006G186900 Gossypium raimondii HOM05D005609 ORTHO05D006871 1.7e-10 69.7 42 71.4
Duzib268G1371 Durio zibethinus HOM05D005609 ORTHO05D006871 2.2e-10 69.3 42 69.0
Thhalv10018566m.g Eutrema salsugineum HOM05D005609 ORTHO05D006871 2.2e-10 69.3 42 73.8
EL10Ac1g00709 Beta vulgaris HOM05D005609 ORTHO05D006871 2.9e-10 68.9 42 71.4
AUR62013794 Chenopodium quinoa HOM05D005609 ORTHO05D006871 3.8e-10 68.6 42 71.4
AUR62023361 Chenopodium quinoa HOM05D005609 ORTHO05D006871 3.8e-10 68.6 42 71.4
DCAR_029526 Daucus carota HOM05D005609 ORTHO05D006871 3.8e-10 68.6 42 73.8
ATR0665G596 Amborella trichopoda HOM05D005609 ORTHO05D006871 6.5e-10 67.8 42 66.7
arahy.Tifrunner.gnm1.ann1.HH0QF2 Arachis hypogaea HOM05D005609 ORTHO05D006871 6.5e-10 67.8 42 71.4
arahy.Tifrunner.gnm1.ann1.R04L27 Arachis hypogaea HOM05D005609 ORTHO05D006871 6.5e-10 67.8 42 71.4
FAN03G0926 Fragaria x ananassa HOM05D005609 ORTHO05D006871 6.5e-10 67.8 37 75.7
CDE02G3958 Ceratophyllum demersum HOM05D005609 ORTHO05D006871 8.5e-10 67.4 42 66.7
CDE11G0052 Ceratophyllum demersum HOM05D005609 ORTHO05D006871 1.1e-09 67.0 42 66.7
MD07G1087900 Malus domestica HOM05D005609 ORTHO05D006871 1.1e-09 67.0 42 71.4
MD02G1225900 Malus domestica HOM05D005609 ORTHO05D006871 1.4e-09 66.6 42 69.0
Prupe.2G114600 Prunus persica HOM05D005609 ORTHO05D006871 1.4e-09 66.6 42 69.0
FvH4_7g08680 Fragaria vesca HOM05D005609 ORTHO05D006871 1.9e-09 66.2 42 66.7
FAN03G3361 Fragaria x ananassa HOM05D005609 ORTHO05D006871 1.9e-09 66.2 42 66.7
FAN06G0131 Fragaria x ananassa HOM05D005609 ORTHO05D006871 1.9e-09 66.2 42 66.7
FAN10G3233 Fragaria x ananassa HOM05D005609 ORTHO05D006871 1.9e-09 66.2 42 66.7
FAN10G3950 Fragaria x ananassa HOM05D005609 ORTHO05D006871 1.9e-09 66.2 42 66.7
Zm00001eb415700 Zea mays HOM05D005609 ORTHO05D006871 3.2e-09 65.5 54 55.6
RcHm_v2.0_Chr1g0343911 Rosa chinensis HOM05D005609 ORTHO05D006871 4.2e-09 65.1 42 64.3
PSO017G2814 Papaver somniferum HOM05D005609 ORTHO05D006871 5.5e-09 64.7 60 53.3
Os08g0158900 Oryza sativa ssp. japonica HOM05D005609 ORTHO05D006871 1.6e-08 63.2 54 53.7
AagrBONN_evm.TU.Sc2ySwM_362.855 Anthoceros agrestis HOM05D005609 ORTHO05D006871 7.9e-08 60.8 54 51.9
Mapoly0062s0042 Marchantia polymorpha HOM05D005609 ORTHO05D006871 1.8e-07 59.7 54 51.9
unitig_26.g8865 Utricularia gibba HOM05D005609 ORTHO05D006871 6.7e-07 57.8 33 75.8
CBR_g3918 Chara braunii HOM05D005609 ORTHO05D006871 1.1e-06 57.0 36 69.4
SMO174G0003 Selaginella moellendorffii HOM05D005609 ORTHO05D006871 2.0e-06 56.2 42 59.5
SMO174G0269 Selaginella moellendorffii HOM05D005609 ORTHO05D006871 2.0e-06 56.2 42 59.5
Pp3c1_10540 Physcomitrium patens HOM05D005609 ORTHO05D006871 3.3e-06 55.5 54 48.1


User provided reference genes

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