Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025157 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000007 3.0e-93 345.1 169 100.0
Lj3g0011245 Lotus japonicus HOM05D000003 ORTHO05D000007 1.2e-14 84.0 128 36.7
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 1.4e-13 80.5 141 34.0
Lj2g0019281 Lotus japonicus HOM05D000003 ORTHO05D000007 5.2e-13 78.6 107 35.5
Lj6g0027241 Lotus japonicus HOM05D000473 ORTHO05D000007 2.0e-12 76.6 95 42.1
Lj1g0010773 Lotus japonicus HOM05D000003 ORTHO05D000007 5.8e-12 75.1 119 41.2
Lj2g0002638 Lotus japonicus HOM05D000003 ORTHO05D000007 5.8e-12 75.1 106 38.7
EL10Ac6g13602 Beta vulgaris HOM05D000003 ORTHO05D000007 7.5e-12 74.7 122 32.8
Lj3g0019048 Lotus japonicus HOM05D000003 ORTHO05D000007 1.3e-11 73.9 117 38.5
Lj5g0003428 Lotus japonicus HOM05D000003 ORTHO05D000007 1.3e-11 73.9 122 36.1
Dinv30689 Davidia involucrata HOM05D000003 ORTHO05D000007 2.2e-11 73.2 108 35.2
Lj4g0016016 Lotus japonicus HOM05D000003 ORTHO05D000007 2.9e-11 72.8 137 35.0
Lj6g0024012 Lotus japonicus HOM05D000003 ORTHO05D000007 2.9e-11 72.8 96 39.6
Lj1g0004894 Lotus japonicus HOM05D000003 ORTHO05D000007 6.4e-11 71.6 64 50.0
Lj6g0020901 Lotus japonicus HOM05D000003 ORTHO05D000007 6.4e-11 71.6 99 39.4
Lj4g0014676 Lotus japonicus HOM05D000003 ORTHO05D000007 8.3e-11 71.2 95 38.9
TPR.G34138 Trifolium pratense HOM05D000003 ORTHO05D000007 8.3e-11 71.2 72 41.7
Lj3g0026450 Lotus japonicus HOM05D000003 ORTHO05D000007 1.1e-10 70.9 130 36.2
Lj6g0003171 Lotus japonicus HOM05D000003 ORTHO05D000007 1.1e-10 70.9 111 36.9
EL10Ac2g03868 Beta vulgaris HOM05D000003 ORTHO05D000007 1.4e-10 70.5 154 28.6
Lj2g0015907 Lotus japonicus HOM05D000003 ORTHO05D000007 2.4e-10 69.7 139 34.5
AUR62042607 Chenopodium quinoa HOM05D002059 ORTHO05D000007 3.2e-10 69.3 154 29.2
Lj1g0012109 Lotus japonicus HOM05D000003 ORTHO05D000007 3.2e-10 69.3 96 37.5
Lj3g0003086 Lotus japonicus HOM05D000003 ORTHO05D000006 3.2e-10 69.3 56 55.4
Lj4g0024296 Lotus japonicus HOM05D000003 ORTHO05D000007 3.2e-10 69.3 56 55.4
TPR.G18895 Trifolium pratense HOM05D000003 ORTHO05D000007 3.2e-10 69.3 60 53.3
Lj2g0006651 Lotus japonicus HOM05D000003 ORTHO05D000007 4.1e-10 68.9 107 35.5
Lj4g0008475 Lotus japonicus HOM05D000003 ORTHO05D000007 4.1e-10 68.9 95 38.9
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 4.1e-10 68.9 117 35.0
TPR.G39739 Trifolium pratense HOM05D000003 ORTHO05D000007 4.1e-10 68.9 161 36.0
EL10Ac4g10100 Beta vulgaris HOM05D000003 ORTHO05D000007 5.4e-10 68.6 154 27.9
Lj3g0015936 Lotus japonicus HOM05D000003 ORTHO05D000007 7.1e-10 68.2 157 30.6
Lj5g0016382 Lotus japonicus HOM05D000003 ORTHO05D000007 7.1e-10 68.2 132 36.4
TPR.G29549 Trifolium pratense HOM05D000003 ORTHO05D000007 7.1e-10 68.2 66 50.0
Lj3g0019542 Lotus japonicus HOM05D021482 ORTHO05D000007 9.2e-10 67.8 157 31.8
Lj5g0009009 Lotus japonicus HOM05D000003 ORTHO05D000007 9.2e-10 67.8 95 36.8
Lj5g0009117 Lotus japonicus HOM05D000003 ORTHO05D029824 9.2e-10 67.8 106 34.0
TPR.G23335 Trifolium pratense HOM05D000003 ORTHO05D000007 9.2e-10 67.8 79 40.5
Prupe.7G019600 Prunus persica HOM05D000003 ORTHO05D000007 1.2e-09 67.4 112 33.0
Lj1g0011911 Lotus japonicus HOM05D000003 ORTHO05D000007 2.1e-09 66.6 131 34.4
Lj2g0021734 Lotus japonicus HOM05D000003 ORTHO05D000006 2.1e-09 66.6 134 29.9
LjContig00141g0023727 Lotus japonicus HOM05D013113 ORTHO05D000007 2.1e-09 66.6 152 29.6
EL10Ac5g10755 Beta vulgaris HOM05D000003 ORTHO05D000007 2.7e-09 66.2 115 33.0
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.7e-09 66.2 113 34.5
Sabra15G0018300 Salix brachista HOM05D013820 ORTHO05D000007 2.7e-09 66.2 77 44.2
TPR.G17626 Trifolium pratense HOM05D000003 ORTHO05D000007 2.7e-09 66.2 72 47.2
CSS0020179 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.5e-09 65.9 113 33.6
Lj6g0008720 Lotus japonicus HOM05D021482 ORTHO05D000007 3.5e-09 65.9 162 29.0
Sabra15G0020800 Salix brachista HOM05D013820 ORTHO05D000007 3.5e-09 65.9 77 44.2
Lj6g0015369 Lotus japonicus HOM05D000003 ORTHO05D000007 4.6e-09 65.5 123 36.6
PSO339G4387 Papaver somniferum HOM05D000003 ORTHO05D000007 4.6e-09 65.5 113 31.9
Psat5g160400 Pisum sativum HOM05D000003 ORTHO05D000007 4.6e-09 65.5 93 34.4
TPR.G20742 Trifolium pratense HOM05D000003 ORTHO05D000007 4.6e-09 65.5 76 46.1
TPR.G32099 Trifolium pratense HOM05D000003 ORTHO05D000007 4.6e-09 65.5 78 41.0
COL.COLO4_28420 Corchorus olitorius HOM05D016024 ORTHO05D000007 6.0e-09 65.1 114 35.1
Lj5g0001706 Lotus japonicus HOM05D000003 ORTHO05D000007 6.0e-09 65.1 126 31.0
Lj4g0024417 Lotus japonicus HOM05D013113 ORTHO05D000007 7.8e-09 64.7 137 32.8
TPR.G17627 Trifolium pratense HOM05D000003 ORTHO05D000007 7.8e-09 64.7 70 48.6
TPR.G39703 Trifolium pratense HOM05D000003 ORTHO05D000007 7.8e-09 64.7 60 50.0
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 7.8e-09 64.7 170 28.2
QL11p001943 Quercus lobata HOM05D000003 ORTHO05D000007 1.0e-08 64.3 97 33.0
Sabra09G0015300 Salix brachista HOM05D000003 ORTHO05D000006 1.0e-08 64.3 65 46.2
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.3e-08 63.9 113 33.6
Lj3g0023340 Lotus japonicus HOM05D000003 ORTHO05D000007 1.3e-08 63.9 159 32.1
PGR119G1894 Punica granatum HOM05D000003 ORTHO05D000007 1.3e-08 63.9 145 33.1
TPR.G22161 Trifolium pratense HOM05D000003 ORTHO05D000007 1.3e-08 63.9 141 29.8
Atru.chr9.1215 Acer truncatum HOM05D000003 ORTHO05D000006 1.7e-08 63.5 103 34.0
Lj4g0026510 Lotus japonicus HOM05D000003 ORTHO05D000007 1.7e-08 63.5 159 32.1
QL09p023087 Quercus lobata HOM05D000003 ORTHO05D000007 1.7e-08 63.5 98 35.7
QL11p054864 Quercus lobata HOM05D000003 ORTHO05D000007 1.7e-08 63.5 53 50.9
TPR.G15942 Trifolium pratense HOM05D000003 ORTHO05D000007 1.7e-08 63.5 60 45.0
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-08 63.2 64 48.4
FvH4_1g28741 Fragaria vesca HOM05D000003 ORTHO05D000007 2.3e-08 63.2 63 47.6
Prupe.2G044900 Prunus persica HOM05D000003 ORTHO05D000007 2.3e-08 63.2 76 40.8
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 2.3e-08 63.2 68 45.6
THA.LOC104799464 Tarenaya hassleriana HOM05D000003 ORTHO05D000007 2.3e-08 63.2 107 33.6
Lj1g0024982 Lotus japonicus HOM05D000003 ORTHO05D000007 3.0e-08 62.8 65 44.6
Lj4g0010109 Lotus japonicus HOM05D000003 ORTHO05D000007 3.0e-08 62.8 126 30.2
RcHm_v2.0_Chr3g0492931 Rosa chinensis HOM05D000003 ORTHO05D000007 3.0e-08 62.8 115 33.9
TPR.G22534 Trifolium pratense HOM05D000003 ORTHO05D000007 3.0e-08 62.8 122 32.8
TPR.G23327 Trifolium pratense HOM05D000737 ORTHO05D000581 3.0e-08 62.8 132 31.8
TPR.G511 Trifolium pratense HOM05D000003 ORTHO05D000007 3.0e-08 62.8 74 41.9
Lj3g0021978 Lotus japonicus HOM05D002777 ORTHO05D001516 3.9e-08 62.4 55 49.1
TPR.G319 Trifolium pratense HOM05D000003 ORTHO05D000007 3.9e-08 62.4 48 60.4
Atru.chr9.654 Acer truncatum HOM05D000003 ORTHO05D000007 5.1e-08 62.0 87 41.4
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.1e-08 62.0 149 31.5
Dinv07064 Davidia involucrata HOM05D000003 ORTHO05D000007 5.1e-08 62.0 143 30.8
Thecc.03G216200 Theobroma cacao HOM05D000003 ORTHO05D000006 5.1e-08 62.0 106 32.1
TPR.G11139 Trifolium pratense HOM05D000003 ORTHO05D000007 5.1e-08 62.0 78 37.2
Gorai.003G132500 Gossypium raimondii HOM05D000003 ORTHO05D000007 6.6e-08 61.6 130 33.1
TPR.G4588 Trifolium pratense HOM05D061595 ORTHO05D000007 6.6e-08 61.6 48 58.3
CSS0039165 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 8.6e-08 61.2 124 30.6
AUR62034456 Chenopodium quinoa HOM05D000091 ORTHO05D001510 8.6e-08 61.2 49 51.0
Prupe.4G246900 Prunus persica HOM05D000003 ORTHO05D000007 8.6e-08 61.2 90 36.7
Sabra15G0091800 Salix brachista HOM05D000003 ORTHO05D000007 8.6e-08 61.2 65 44.6
Prupe.1G231200 Prunus persica HOM05D000003 ORTHO05D000007 1.1e-07 60.8 65 41.5
Sabra06G0138800 Salix brachista HOM05D000003 ORTHO05D000007 1.1e-07 60.8 65 41.5
Sabra08G0135000 Salix brachista HOM05D000003 ORTHO05D000007 1.1e-07 60.8 97 35.1
TPR.G24275 Trifolium pratense HOM05D000003 ORTHO05D000007 1.1e-07 60.8 48 54.2
COL.COLO4_28682 Corchorus olitorius HOM05D000003 ORTHO05D000007 1.5e-07 60.5 97 35.1
RcHm_v2.0_Chr2g0171821 Rosa chinensis HOM05D000003 ORTHO05D000007 1.5e-07 60.5 68 45.6
Atru.chr10.1301 Acer truncatum HOM05D000003 ORTHO05D000006 1.9e-07 60.1 138 33.3
Atru.chr7.1602 Acer truncatum HOM05D000003 ORTHO05D000007 1.9e-07 60.1 122 32.8
COL.COLO4_13796 Corchorus olitorius HOM05D000003 ORTHO05D000007 1.9e-07 60.1 134 32.8
Gorai.010G180600 Gossypium raimondii HOM05D000003 ORTHO05D000007 1.9e-07 60.1 65 41.5
Lj3g0003480 Lotus japonicus HOM05D000003 ORTHO05D000007 1.9e-07 60.1 133 31.6
Atru.chr11.84 Acer truncatum HOM05D000003 ORTHO05D000007 2.5e-07 59.7 64 45.3
QL02p083425 Quercus lobata HOM05D000003 ORTHO05D000007 2.5e-07 59.7 110 33.6
QL03p025414 Quercus lobata HOM05D000003 ORTHO05D000007 2.5e-07 59.7 155 26.5
Sabra04G0049100 Salix brachista HOM05D000003 ORTHO05D000007 2.5e-07 59.7 60 45.0
Atru.chr12.2519 Acer truncatum HOM05D000003 ORTHO05D000007 3.3e-07 59.3 64 43.8
Psat4g181920 Pisum sativum HOM05D000003 ORTHO05D000007 3.3e-07 59.3 117 29.9
PGR142G4317 Punica granatum HOM05D000003 ORTHO05D000007 3.3e-07 59.3 57 45.6
QL02p014176 Quercus lobata HOM05D000003 ORTHO05D000007 3.3e-07 59.3 60 45.0
TPR.G14379 Trifolium pratense HOM05D000003 ORTHO05D000007 3.3e-07 59.3 48 56.2
Atru.chr6.753 Acer truncatum HOM05D000003 ORTHO05D000007 4.3e-07 58.9 60 41.7
Psat0ss5882g0080 Pisum sativum HOM05D000003 ORTHO05D000007 4.3e-07 58.9 59 49.2
QL08p027428 Quercus lobata HOM05D022054 ORTHO05D000007 4.3e-07 58.9 71 39.4
QL10p063003 Quercus lobata HOM05D000003 ORTHO05D000007 4.3e-07 58.9 69 42.0
RcHm_v2.0_Chr2g0146151 Rosa chinensis HOM05D000003 ORTHO05D000006 4.3e-07 58.9 158 26.6
TPR.G24718 Trifolium pratense HOM05D000003 ORTHO05D000007 4.3e-07 58.9 48 54.2
Atru.chr2.285 Acer truncatum HOM05D000003 ORTHO05D000004 5.6e-07 58.5 103 35.0
Atru.chr4.106 Acer truncatum HOM05D000003 ORTHO05D000007 5.6e-07 58.5 64 45.3
COL.COLO4_12097 Corchorus olitorius HOM05D000003 ORTHO05D000007 5.6e-07 58.5 101 32.7
Gorai.005G202500 Gossypium raimondii HOM05D000003 ORTHO05D036330 5.6e-07 58.5 107 35.5
Hma1.2p1_0773F.1_g216200 Hydrangea macrophylla HOM05D000003 ORTHO05D000007 5.6e-07 58.5 107 35.5
Psat5g038720 Pisum sativum HOM05D000003 ORTHO05D000007 5.6e-07 58.5 66 42.4
Prupe.1G055400 Prunus persica HOM05D000003 ORTHO05D000007 5.6e-07 58.5 96 34.4
TPR.G16044 Trifolium pratense HOM05D000003 ORTHO05D000007 5.6e-07 58.5 129 33.3
TPR.G31733 Trifolium pratense HOM05D000003 ORTHO05D000007 5.6e-07 58.5 48 54.2
Atru.chr11.754 Acer truncatum HOM05D000003 ORTHO05D000007 7.3e-07 58.2 132 34.1
Lj6g0020434 Lotus japonicus HOM05D013113 ORTHO05D000007 7.3e-07 58.2 137 29.2
PSO017G5897 Papaver somniferum HOM05D000003 ORTHO05D000007 7.3e-07 58.2 139 27.3
QL12p006495 Quercus lobata HOM05D000003 ORTHO05D000007 7.3e-07 58.2 115 32.2
TPR.G18288 Trifolium pratense HOM05D000003 ORTHO05D000006 7.3e-07 58.2 54 50.0
Atru.chr2.1276 Acer truncatum HOM05D000003 ORTHO05D000007 9.5e-07 57.8 105 31.4
Atru.chr7.666 Acer truncatum HOM05D000003 ORTHO05D000007 1.2e-06 57.4 132 29.5
BcaNung02476 Brassica carinata HOM05D000003 ORTHO05D000007 1.2e-06 57.4 103 35.9
Gorai.010G155700 Gossypium raimondii HOM05D015435 ORTHO05D000007 1.2e-06 57.4 66 50.0
Psat2g047680 Pisum sativum HOM05D000003 ORTHO05D000007 1.2e-06 57.4 86 33.7
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 1.2e-06 57.4 141 27.0
EL10Ac3g06843 Beta vulgaris HOM05D000003 ORTHO05D000007 1.6e-06 57.0 145 27.6
Prupe.1G179200 Prunus persica HOM05D000003 ORTHO05D000007 1.6e-06 57.0 56 46.4
Prupe.2G055100 Prunus persica HOM05D000003 ORTHO05D000007 1.6e-06 57.0 54 46.3
QL03p025122 Quercus lobata HOM05D000003 ORTHO05D000007 1.6e-06 57.0 52 42.3
TPR.G29398 Trifolium pratense HOM05D000003 ORTHO05D000007 1.6e-06 57.0 124 27.4
Atru.chr7.255 Acer truncatum HOM05D000003 ORTHO05D000007 2.1e-06 56.6 84 38.1
Lj3g0001406 Lotus japonicus HOM05D000003 ORTHO05D000007 2.1e-06 56.6 115 33.0
QL01p027762 Quercus lobata HOM05D000003 ORTHO05D000006 2.1e-06 56.6 78 38.5
QL01p027824 Quercus lobata HOM05D000003 ORTHO05D000006 2.1e-06 56.6 78 38.5
BcaC02g10458 Brassica carinata HOM05D000003 ORTHO05D000007 3.6e-06 55.8 103 35.0
Gorai.001G193300 Gossypium raimondii HOM05D039879 ORTHO05D036269 3.6e-06 55.8 115 35.7
Gorai.007G282400 Gossypium raimondii HOM05D035969 ORTHO05D000007 3.6e-06 55.8 70 40.0
PGR004G0997 Punica granatum HOM05D000003 ORTHO05D000007 3.6e-06 55.8 69 36.2
PGR067G0007 Punica granatum HOM05D000003 ORTHO05D000007 3.6e-06 55.8 61 39.3
QL02p068766 Quercus lobata HOM05D000003 ORTHO05D000007 3.6e-06 55.8 67 40.3
QL06p011077 Quercus lobata HOM05D000003 ORTHO05D000007 3.6e-06 55.8 83 34.9
QL02p080468 Quercus lobata HOM05D000003 ORTHO05D000007 4.7e-06 55.5 100 31.0
QL08p058815 Quercus lobata HOM05D000003 ORTHO05D000007 4.7e-06 55.5 113 30.1
Gorai.009G311100 Gossypium raimondii HOM05D000003 ORTHO05D000007 6.2e-06 55.1 61 39.3
Hma1.2p1_0828F.1_g225200 Hydrangea macrophylla HOM05D000003 ORTHO05D000007 6.2e-06 55.1 87 40.2
Lj3g0002364 Lotus japonicus HOM05D000003 ORTHO05D000007 6.2e-06 55.1 148 29.1
Lj5g0014385 Lotus japonicus HOM05D000003 ORTHO05D000007 6.2e-06 55.1 75 38.7
QL04p067563 Quercus lobata HOM05D000003 ORTHO05D000007 6.2e-06 55.1 52 44.2
Rhsim07G0171700 Rhododendron simsii HOM05D000003 ORTHO05D000006 6.2e-06 55.1 145 30.3
RcHm_v2.0_Chr7g0187781 Rosa chinensis HOM05D000003 ORTHO05D000007 6.2e-06 55.1 63 39.7
BcaC08g46153 Brassica carinata HOM05D000003 ORTHO05D000007 8.1e-06 54.7 58 48.3
Cpa.g.sc16.67 Carica papaya HOM05D000003 ORTHO05D000007 8.1e-06 54.7 95 33.7
QL04p038160 Quercus lobata HOM05D000003 ORTHO05D000007 8.1e-06 54.7 125 24.8
vmacro19234 Vaccinium macrocarpon HOM05D003181 ORTHO05D003689 8.1e-06 54.7 126 32.5


User provided reference genes

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