Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.2e-55 218.0 99 100.0
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.5e-20 102.8 55 87.3
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 4.4e-20 101.3 103 56.3
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 9.8e-20 100.1 101 56.4
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 5.4e-18 94.4 50 88.0
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 1.6e-17 92.8 50 86.0
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 1.6e-17 92.8 50 86.0
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 1.6e-17 92.8 50 86.0
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 1.6e-17 92.8 50 86.0
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 2.0e-17 92.4 50 84.0
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 2.0e-17 92.4 50 84.0
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 2.0e-17 92.4 50 84.0
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 3.5e-17 91.7 50 86.0
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 3.5e-17 91.7 50 84.0
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 3.5e-17 91.7 50 84.0
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 6.0e-17 90.9 50 84.0
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 6.0e-17 90.9 50 82.0
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 6.0e-17 90.9 50 82.0
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 7.8e-17 90.5 50 82.0
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 7.8e-17 90.5 51 82.4
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 7.8e-17 90.5 50 82.0
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 1.0e-16 90.1 50 82.0
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.0e-16 90.1 50 82.0
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 1.0e-16 90.1 57 78.9
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 1.3e-16 89.7 50 82.0
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 1.3e-16 89.7 50 84.0
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 1.7e-16 89.4 57 77.2
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 1.7e-16 89.4 50 82.0
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 2.3e-16 89.0 50 80.0
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 2.3e-16 89.0 50 80.0
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 2.3e-16 89.0 50 80.0
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 3.0e-16 88.6 50 84.0
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 3.9e-16 88.2 50 80.0
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 3.9e-16 88.2 50 80.0
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 3.9e-16 88.2 48 83.3
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 5.0e-16 87.8 50 80.0
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 5.0e-16 87.8 50 78.0
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 5.0e-16 87.8 50 80.0
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 8.6e-16 87.0 55 72.7
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 8.6e-16 87.0 50 78.0
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.1e-15 86.7 50 80.0
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 1.1e-15 86.7 50 80.0
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 1.1e-15 86.7 50 78.0
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 1.5e-15 86.3 50 78.0
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 1.9e-15 85.9 50 78.0
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 1.9e-15 85.9 50 78.0
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 1.9e-15 85.9 50 78.0
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 1.9e-15 85.9 50 78.0
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 2.5e-15 85.5 50 78.0
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 2.5e-15 85.5 50 78.0
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 2.5e-15 85.5 50 78.0
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 5.6e-15 84.3 50 76.0
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 9.5e-15 83.6 48 77.1
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 9.5e-15 83.6 57 70.2
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 9.5e-15 83.6 50 76.0
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 9.5e-15 83.6 50 78.0
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 1.2e-14 83.2 50 76.0
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.2e-14 83.2 50 74.0
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 1.2e-14 83.2 50 74.0
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 1.2e-14 83.2 50 74.0
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 1.6e-14 82.8 50 72.0
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 1.6e-14 82.8 57 70.2
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 2.1e-14 82.4 57 70.2
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 2.1e-14 82.4 57 70.2
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 2.1e-14 82.4 50 74.0
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 2.8e-14 82.0 48 75.0
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 2.8e-14 82.0 50 76.0
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 2.8e-14 82.0 50 76.0
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 2.8e-14 82.0 50 74.0
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 3.6e-14 81.6 50 72.0
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 3.6e-14 81.6 50 72.0
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 8.1e-14 80.5 50 70.0
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 8.1e-14 80.5 50 72.0
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 1.1e-13 80.1 50 76.0
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 1.1e-13 80.1 48 75.0
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 1.1e-13 80.1 50 74.0
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 1.1e-13 80.1 50 74.0
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 1.1e-13 80.1 50 74.0
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 1.4e-13 79.7 50 72.0
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 1.4e-13 79.7 50 74.0
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 1.8e-13 79.3 48 70.8
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 1.8e-13 79.3 48 70.8
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 1.8e-13 79.3 50 72.0
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 2.3e-13 79.0 50 70.0
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 2.3e-13 79.0 50 70.0
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 2.3e-13 79.0 50 72.0
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 3.1e-13 78.6 50 70.0
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 6.8e-13 77.4 50 70.0
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 6.8e-13 77.4 50 70.0
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 8.9e-13 77.0 48 68.8
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 1.2e-12 76.6 50 70.0
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 1.2e-12 76.6 48 72.9
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 1.5e-12 76.3 50 70.0
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 1.5e-12 76.3 50 70.0
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 1.5e-12 76.3 50 68.0
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 4.4e-12 74.7 50 68.0
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 4.4e-12 74.7 50 68.0
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 4.4e-12 74.7 50 68.0
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 9.9e-12 73.6 50 68.0
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 9.9e-12 73.6 50 68.0
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 9.9e-12 73.6 50 68.0
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 1.3e-11 73.2 50 66.0
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 1.3e-11 73.2 50 66.0
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 1.3e-11 73.2 50 66.0
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 6.4e-11 70.9 50 68.0
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 1.1e-10 70.1 48 64.6
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 1.2e-09 66.6 52 63.5
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 2.7e-09 65.5 46 65.2
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 3.5e-09 65.1 48 60.4
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 1.3e-08 63.2 46 67.4


User provided reference genes

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